Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
ATPasesnap_masked-scaffold3281_size9392-processed-gene-0.2gene
atpase aaamaker-scaffold107_size358081-snap-gene-1.0gene
atpase aaamaker-scaffold1209_size55568-snap-gene-0.10gene
atpase aaamaker-scaffold1517_size37798-snap-gene-0.11gene
atpase aaamaker-scaffold1524_size37499-snap-gene-0.2gene
atpase aaamaker-scaffold1524_size37499-snap-gene-0.3gene
atpase aaamaker-scaffold215_size253256-snap-gene-1.4gene
atpase aaamaker-scaffold3451_size8600-snap-gene-0.0gene
atpase aaamaker-scaffold4_size1398522-snap-gene-1.0gene
atpase aaamaker-scaffold694_size110379-snap-gene-0.4gene
atpase family aaa domain-containing protein 2b- partialmaker-scaffold276_size226481-snap-gene-1.20gene
atpase wrnip1snap_masked-scaffold743_size103610-processed-gene-0.5gene
atp-binding cassettemaker-scaffold927_size80360-snap-gene-0.22gene
atp-binding cassette sub-family a member 1-likesnap_masked-scaffold285_size222332-processed-gene-1.2gene
atp-binding cassette sub-family a member 3maker-scaffold111_size354240-snap-gene-2.29gene
atp-binding cassette sub-family a member 5maker-scaffold200_size264178-snap-gene-0.10gene
atp-binding cassette sub-family a member 5maker-scaffold200_size264178-snap-gene-0.9gene
atp-binding cassette sub-family a member 7maker-scaffold927_size80360-snap-gene-0.21gene
atp-binding cassette sub-family b member mitochondrialmaker-scaffold722_size106786-snap-gene-0.22gene
atp-binding cassette sub-family b member mitochondrial isoform x1maker-scaffold683_size112676-snap-gene-0.16gene
atp-binding cassette sub-family b member mitochondrial isoform x2maker-scaffold845_size89356-snap-gene-0.18gene
atp-binding cassette sub-family c member 11- partialmaker-scaffold605_size125465-snap-gene-0.26gene
atp-binding cassette sub-family d member 2maker-scaffold480_size160630-snap-gene-0.28gene
atp-binding cassette sub-family d member 4-likemaker-scaffold1373_size44751-snap-gene-0.3gene
atp-binding cassette sub-family f member 1-likemaker-scaffold495_size155559-snap-gene-0.33gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
Downloads