EMLSAG00000000098, EMLSAG00000000098-682864 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000098
Unique NameEMLSAG00000000098-682864
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000098 vs. C. finmarchicus
Match: gi|592766328|gb|GAXK01188240.1| (TSA: Calanus finmarchicus comp10430_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 1.126e-1
Identity = 14/43 (32.56%), Postives = 24/43 (55.81%), Query Frame = 0 
Query:   21 VANIHIIEKDNVFVTLMNSEDAESAMYKLKSTPVLGQEVEMDI 63
            V + +   K   FVT  N +DA  A  +L    +LGQ+V++++
Sbjct:  256 VTDTYNTGKGYAFVTFDNKDDASEATEQLNGATILGQQVKVNV 384
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BLAST of EMLSAG00000000098 vs. C. finmarchicus
Match: gi|592779045|gb|GAXK01175523.1| (TSA: Calanus finmarchicus comp2654_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 4.232e-1
Identity = 14/35 (40.00%), Postives = 20/35 (57.14%), Query Frame = 0 
Query:   29 KDNVFVTLMNSEDAESAMYKLKSTPVLGQEVEMDI 63
            K   F+T    E+A+ A   L  T V GQE+++DI
Sbjct:  289 KGYAFITYETKEEADQAKEMLNGTTVCGQEIKVDI 393
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BLAST of EMLSAG00000000098 vs. C. finmarchicus
Match: gi|592779046|gb|GAXK01175522.1| (TSA: Calanus finmarchicus comp2654_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 4.280e-1
Identity = 14/35 (40.00%), Postives = 20/35 (57.14%), Query Frame = 0 
Query:   29 KDNVFVTLMNSEDAESAMYKLKSTPVLGQEVEMDI 63
            K   F+T    E+A+ A   L  T V GQE+++DI
Sbjct:  262 KGYAFITYETKEEADQAKEMLNGTTVCGQEIKVDI 366
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BLAST of EMLSAG00000000098 vs. C. finmarchicus
Match: gi|592857027|gb|GAXK01100517.1| (TSA: Calanus finmarchicus comp7689_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.529e+0
Identity = 12/31 (38.71%), Postives = 21/31 (67.74%), Query Frame = 0 
Query:   33 FVTLMNSEDAESAMYKLKSTPVLGQEVEMDI 63
            FVT  ++EDA+ AM  L+   V G+E++ ++
Sbjct: 1944 FVTFGSAEDAKKAMDALEGQEVCGREIQCNV 2036
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BLAST of EMLSAG00000000098 vs. C. finmarchicus
Match: gi|592857028|gb|GAXK01100516.1| (TSA: Calanus finmarchicus comp7689_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.533e+0
Identity = 12/31 (38.71%), Postives = 21/31 (67.74%), Query Frame = 0 
Query:   33 FVTLMNSEDAESAMYKLKSTPVLGQEVEMDI 63
            FVT  ++EDA+ AM  L+   V G+E++ ++
Sbjct: 2040 FVTFGSAEDAKKAMDALEGQEVCGREIQCNV 2132
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BLAST of EMLSAG00000000098 vs. C. finmarchicus
Match: gi|592831069|gb|GAXK01126475.1| (TSA: Calanus finmarchicus comp47440_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.633e+0
Identity = 17/48 (35.42%), Postives = 28/48 (58.33%), Query Frame = 0 
Query:   20 PVANIHII-----EKDNVFVTLMNSEDAESAMYKLKSTPVLGQEVEMD 62
            P+ ++ II      K   FVT  +S DAESA  +L  + V G+++E++
Sbjct: 5284 PILDVEIIFNERGSKGFGFVTFSSSGDAESARSELHGSVVEGRKIEVN 5427
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BLAST of EMLSAG00000000098 vs. C. finmarchicus
Match: gi|592788498|gb|GAXK01166070.1| (TSA: Calanus finmarchicus comp99_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.158e+0
Identity = 13/42 (30.95%), Postives = 24/42 (57.14%), Query Frame = 0 
Query:   21 VANIHIIEKDNVFVTLMNSEDAESAMYKLKSTPVLGQEVEMD 62
            V +++   K   FVT    EDAE+A  ++    V GQ+++++
Sbjct:  640 VTDVYNTGKGFAFVTFDRKEDAETATQEMDGQTVNGQQIKVN 765
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BLAST of EMLSAG00000000098 vs. C. finmarchicus
Match: gi|592785791|gb|GAXK01168777.1| (TSA: Calanus finmarchicus comp522_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.722e+0
Identity = 13/35 (37.14%), Postives = 19/35 (54.29%), Query Frame = 0 
Query:   29 KDNVFVTLMNSEDAESAMYKLKSTPVLGQEVEMDI 63
            K   FVT  N E A  A  +L    VLGQ +++++
Sbjct: 1763 KGYAFVTFDNKESASEATERLNGQEVLGQVLKVNV 1867
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BLAST of EMLSAG00000000098 vs. C. finmarchicus
Match: gi|592788500|gb|GAXK01166068.1| (TSA: Calanus finmarchicus comp99_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 8.297e+0
Identity = 13/42 (30.95%), Postives = 24/42 (57.14%), Query Frame = 0 
Query:   21 VANIHIIEKDNVFVTLMNSEDAESAMYKLKSTPVLGQEVEMD 62
            V +++   K   FVT    EDAE+A  ++    V GQ+++++
Sbjct:  187 VTDVYNTGKGFAFVTFDRKEDAETATQQMDGQTVNGQQLKVN 312
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BLAST of EMLSAG00000000098 vs. L. salmonis peptides
Match: EMLSAP00000000098 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1017:34509:34836:-1 gene:EMLSAG00000000098 transcript:EMLSAT00000000098 description:"snap_masked-LSalAtl2s1017-processed-gene-0.1")

HSP 1 Score: 157.532 bits (397), Expect = 1.901e-51
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 
Query:    1 MSVRDTWPLSVLEDDLSNNPVANIHIIEKDNVFVTLMNSEDAESAMYKLKSTPVLGQEVEMDIFLRARRRGKYKSR 76
            MSVRDTWPLSVLEDDLSNNPVANIHIIEKDNVFVTLMNSEDAESAMYKLKSTPVLGQEVEMDIFLRARRRGKYKSR
Sbjct:    1 MSVRDTWPLSVLEDDLSNNPVANIHIIEKDNVFVTLMNSEDAESAMYKLKSTPVLGQEVEMDIFLRARRRGKYKSR 76
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BLAST of EMLSAG00000000098 vs. L. salmonis peptides
Match: EMLSAP00000002557 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1510:50770:51213:1 gene:EMLSAG00000002557 transcript:EMLSAT00000002557 description:"augustus_masked-LSalAtl2s1510-processed-gene-0.5")

HSP 1 Score: 74.3294 bits (181), Expect = 2.475e-18
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 0 
Query:    2 SVRDTWPLSVLEDDLSN-NPVANIHIIEKDNVFVTLMNSEDAESAMYKLKSTPVLGQEVEMDI 63
             VRDT P SVLED+     PVA++HI EK   FVT+M++EDAE AM KL  T V GQEV+++I
Sbjct:   13 GVRDTCPRSVLEDEFGKIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEI 75
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BLAST of EMLSAG00000000098 vs. L. salmonis peptides
Match: EMLSAP00000002556 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1510:24535:24822:1 gene:EMLSAG00000002556 transcript:EMLSAT00000002556 description:"augustus_masked-LSalAtl2s1510-processed-gene-0.4")

HSP 1 Score: 64.6994 bits (156), Expect = 4.144e-15
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 0 
Query:    2 SVRDTWPLSVLEDDLSN-NPVANIHIIEKDNVFVTLMNSEDAESAMYKLKSTPVLGQEVEMDI 63
             VRDT P SVLED+ S   PV +++I EK   FVT+ NSEDA+ A  KL  T V GQE++++I
Sbjct:   13 GVRDTCPRSVLEDEFSKIGPVTDVYITEKGYAFVTMTNSEDADDAARKLNGTTVDGQELKVEI 75
[Close]
BLAST of EMLSAG00000000098 vs. L. salmonis peptides
Match: EMLSAP00000007347 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4162:3600:4079:1 gene:EMLSAG00000007347 transcript:EMLSAT00000007347 description:"augustus_masked-LSalAtl2s4162-processed-gene-0.0")

HSP 1 Score: 65.855 bits (159), Expect = 4.466e-15
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 0 
Query:    2 SVRDTWPLSVLEDDLSN-NPVANIHIIEKDNVFVTLMNSEDAESAMYKLKSTPVLGQEVEMDI 63
             VRDT P SVLED+ S   PV +++I EK   FVT+ NSEDA+ A  KL  T V GQE++++I
Sbjct:   13 GVRDTCPRSVLEDEFSKIGPVTDVYITEKGYAFVTMTNSEDADDAARKLNGTTVDGQELKVEI 75
[Close]
BLAST of EMLSAG00000000098 vs. L. salmonis peptides
Match: EMLSAP00000005955 (pep:novel supercontig:LSalAtl2s:LSalAtl2s321:630816:639965:-1 gene:EMLSAG00000005955 transcript:EMLSAT00000005955 description:"snap_masked-LSalAtl2s321-processed-gene-6.7")

HSP 1 Score: 50.0618 bits (118), Expect = 7.846e-10
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 0 
Query:   19 NPVANIHIIEKDNVFVTLMNSEDAESAMYKLKSTPVLGQEVEMDI 63
             PV ++HI EKD VF T+ N+ED E  M +L  T + GQ+V+M+I
Sbjct:   15 GPVEDVHIKEKDQVFETMRNAEDTEGFMRRLNGTTIPGQDVKMEI 59
[Close]
BLAST of EMLSAG00000000098 vs. nr
Match: gi|225711820|gb|ACO11756.1| (RNA-binding protein 3 [Lepeophtheirus salmonis] >gi|225712198|gb|ACO11945.1| RNA-binding protein 3 [Lepeophtheirus salmonis])

HSP 1 Score: 64.3142 bits (155), Expect = 3.322e-11
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 0 
Query:    2 SVRDTWPLSVLEDDLSN-NPVANIHIIEKDNVFVTLMNSEDAESAMYKLKSTPVLGQEVEMDI 63
             VRDT P SVLED+ S   PV +++I EK   FVT+ NSEDA+ A  KL  T V GQE++++I
Sbjct:   13 GVRDTCPRSVLEDEFSKIGPVTDVYITEKGYAFVTMTNSEDADDAARKLNGTTVDGQELKVEI 75
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000098 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000098 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 9
Match NameE-valueIdentityDescription
gi|592766328|gb|GAXK01188240.1|1.126e-132.56TSA: Calanus finmarchicus comp10430_c0_seq1 transc... [more]
gi|592779045|gb|GAXK01175523.1|4.232e-140.00TSA: Calanus finmarchicus comp2654_c1_seq1 transcr... [more]
gi|592779046|gb|GAXK01175522.1|4.280e-140.00TSA: Calanus finmarchicus comp2654_c0_seq1 transcr... [more]
gi|592857027|gb|GAXK01100517.1|1.529e+038.71TSA: Calanus finmarchicus comp7689_c2_seq2 transcr... [more]
gi|592857028|gb|GAXK01100516.1|1.533e+038.71TSA: Calanus finmarchicus comp7689_c2_seq1 transcr... [more]
gi|592831069|gb|GAXK01126475.1|1.633e+035.42TSA: Calanus finmarchicus comp47440_c0_seq1 transc... [more]
gi|592788498|gb|GAXK01166070.1|6.158e+030.95TSA: Calanus finmarchicus comp99_c2_seq1 transcrib... [more]
gi|592785791|gb|GAXK01168777.1|6.722e+037.14TSA: Calanus finmarchicus comp522_c1_seq1 transcri... [more]
gi|592788500|gb|GAXK01166068.1|8.297e+030.95TSA: Calanus finmarchicus comp99_c0_seq1 transcrib... [more]
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BLAST of EMLSAG00000000098 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 5
Match NameE-valueIdentityDescription
EMLSAP000000000981.901e-51100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1017:3450... [more]
EMLSAP000000025572.475e-1857.14pep:novel supercontig:LSalAtl2s:LSalAtl2s1510:5077... [more]
EMLSAP000000025564.144e-1552.38pep:novel supercontig:LSalAtl2s:LSalAtl2s1510:2453... [more]
EMLSAP000000073474.466e-1552.38pep:novel supercontig:LSalAtl2s:LSalAtl2s4162:3600... [more]
EMLSAP000000059557.846e-1048.89pep:novel supercontig:LSalAtl2s:LSalAtl2s321:63081... [more]
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BLAST of EMLSAG00000000098 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000098 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000098 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|225711820|gb|ACO11756.1|3.322e-1152.38RNA-binding protein 3 [Lepeophtheirus salmonis] >g... [more]
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BLAST of EMLSAG00000000098 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1017supercontigLSalAtl2s1017:34509..34836 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1017-processed-gene-0.1
Biotypeprotein_coding
EvidenceIEA
NoteRNA-binding protein 3 [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000098 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000098EMLSAT00000000098-695945Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1017:34509..34836-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000098-682864 ID=EMLSAG00000000098-682864|Name=EMLSAG00000000098|organism=Lepeophtheirus salmonis|type=gene|length=328bp|location=Sequence derived from alignment at LSalAtl2s1017:34509..34836- (Lepeophtheirus salmonis)
ATGAGGTATTTTAAACTGTAAACAAYCCTACCAATAAAGGGTAATAAAAA
ATAAGGGGTTTCATGAGCTGTTTGAGGAAGGAACAAAGTTATTCGTTTAT
AGTGTCCGAGACACTTGGCCCCTCAGTGTGCTAGAAGATGATTTAAGCAA
CAATCCCGTGGCAAATATTCACATAATAGAAAAAGACAACGTCTTTGTGA
CTTTGATGAACTCTGAAGATGCAGAAAGTGCCATGTACAAATTGAAAAGC
ACCCCGGTTCTTGGACAGGAAGTGGAGATGGATATTTTCCTTAGAGCAAG
ACGTCGTGGAAAATACAAAAGTCGATAG
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