EMLSAG00000001305, EMLSAG00000001305-684071 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001305
Unique NameEMLSAG00000001305-684071
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001305 vs. C. finmarchicus
Match: gi|592795446|gb|GAXK01159122.1| (TSA: Calanus finmarchicus comp3800263_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.084e+0
Identity = 15/51 (29.41%), Postives = 26/51 (50.98%), Query Frame = 0 
Query:   21 EDPCNMVLDNHNRAEML--SRNFVFGSNNPWPKKQVSYTFGPSFTSKEKSL 69
            ED CN  +D  NRA++    RNF  G      ++++++      ++ EK L
Sbjct:  180 EDDCNFTVDRWNRAKIRK*ERNFQLGLLVKLVRREINFKPVAGISNLEKKL 332
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BLAST of EMLSAG00000001305 vs. C. finmarchicus
Match: gi|592954695|gb|GAXK01003858.1| (TSA: Calanus finmarchicus comp2093481_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.463e+0
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 0 
Query:   49 WPKKQVSYTFGPSFTSKEK 67
            WP   V Y F PSFTS ++
Sbjct:  779 WPGNNVPYYFRPSFTSTDR 835
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BLAST of EMLSAG00000001305 vs. C. finmarchicus
Match: gi|592940370|gb|GAXK01018183.1| (TSA: Calanus finmarchicus comp32024_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.534e+0
Identity = 11/33 (33.33%), Postives = 19/33 (57.58%), Query Frame = 0 
Query:   38 SRNFVFGSNNPWPKKQVSYTFGPSFTSKEKSLI 70
            ++N +   +N W    V YT   +FTS E+++I
Sbjct:  312 TKNGIAALDNHWGSGLVPYTIDAAFTSSERAVI 410
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BLAST of EMLSAG00000001305 vs. L. salmonis peptides
Match: EMLSAP00000001305 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1217:75372:75658:-1 gene:EMLSAG00000001305 transcript:EMLSAT00000001305 description:"maker-LSalAtl2s1217-snap-gene-1.13")

HSP 1 Score: 147.517 bits (371), Expect = 1.335e-47
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 
Query:    1 MITYVLLLSLLSILVQPYHAEDPCNMVLDNHNRAEMLSRNFVFGSNNPWPKKQVSYTFGPSFTSKEKSLI 70
            MITYVLLLSLLSILVQPYHAEDPCNMVLDNHNRAEMLSRNFVFGSNNPWPKKQVSYTFGPSFTSKEKSLI
Sbjct:    1 MITYVLLLSLLSILVQPYHAEDPCNMVLDNHNRAEMLSRNFVFGSNNPWPKKQVSYTFGPSFTSKEKSLI 70
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BLAST of EMLSAG00000001305 vs. L. salmonis peptides
Match: EMLSAP00000008156 (pep:novel supercontig:LSalAtl2s:LSalAtl2s488:318508:319851:-1 gene:EMLSAG00000008156 transcript:EMLSAT00000008156 description:"maker-LSalAtl2s488-snap-gene-2.6")

HSP 1 Score: 135.961 bits (341), Expect = 4.207e-42
Identity = 63/70 (90.00%), Postives = 65/70 (92.86%), Query Frame = 0 
Query:    1 MITYVLLLSLLSILVQPYHAEDPCNMVLDNHNRAEMLSRNFVFGSNNPWPKKQVSYTFGPSFTSKEKSLI 70
            MITYVLLLS+ SILVQPYHAED C MVLDNHNRAEM+SRNFVFGSNN WPKKQV YTFGPSFTSKEKSLI
Sbjct:    1 MITYVLLLSVFSILVQPYHAEDACKMVLDNHNRAEMMSRNFVFGSNNLWPKKQVPYTFGPSFTSKEKSLI 70
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BLAST of EMLSAG00000001305 vs. L. salmonis peptides
Match: EMLSAP00000003608 (pep:novel supercontig:LSalAtl2s:LSalAtl2s197:439666:441909:1 gene:EMLSAG00000003608 transcript:EMLSAT00000003608 description:"augustus_masked-LSalAtl2s197-processed-gene-3.1")

HSP 1 Score: 112.079 bits (279), Expect = 6.683e-33
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 0 
Query:    1 MITYVLLLSLLSILVQPYHAEDPCNMVLDNHNRAEMLSRNFVFGSNNPWPKKQVSYTFGPSFTSKEKSLI 70
            MITY+LLL++ SIL+ PY AED C M+LD HN+AEM+SRNF+FG+NN WP KQV YTFGPSFT  EKSLI
Sbjct:    1 MITYLLLLTVASILIPPYQAEDGCKMMLDKHNKAEMMSRNFIFGNNNLWPNKQVPYTFGPSFTPNEKSLI 70
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BLAST of EMLSAG00000001305 vs. L. salmonis peptides
Match: EMLSAP00000009605 (pep:novel supercontig:LSalAtl2s:LSalAtl2s617:5548:8177:1 gene:EMLSAG00000009605 transcript:EMLSAT00000009605 description:"maker-LSalAtl2s617-snap-gene-0.28")

HSP 1 Score: 108.997 bits (271), Expect = 1.376e-31
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 0 
Query:    1 MITYVLLLSLLSILVQPYHAEDPCNMVLDNHNRAEMLSRNFVFGSNNPWPKKQVSYTFGPSFTSKEKSLI 70
            MITY+LLL++ SIL+ PY AE  CNM+LD HNRAEM+SR+FVFGSNN WP KQV YTFG S TS E+S I
Sbjct:    1 MITYILLLTVCSILIPPYQAEGACNMMLDKHNRAEMMSRSFVFGSNNLWPNKQVPYTFGASLTSNERSSI 70
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BLAST of EMLSAG00000001305 vs. L. salmonis peptides
Match: EMLSAP00000009907 (pep:novel supercontig:LSalAtl2s:LSalAtl2s645:36339:38052:1 gene:EMLSAG00000009907 transcript:EMLSAT00000009907 description:"augustus_masked-LSalAtl2s645-processed-gene-0.0")

HSP 1 Score: 105.531 bits (262), Expect = 1.123e-29
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 0 
Query:    1 MITYVLLLSLLSILVQPYHAEDPCNMVLDNHNRAEMLSRNFVFGSNNPWPKKQVSYTFGPSFTSKEKSLI 70
            MITY LLLS+LSILVQPY AED C MVLDNHNRAEM+S+ FVFGSNN WPKKQVSY FGPSFTSKEK LI
Sbjct:    1 MITYALLLSVLSILVQPYPAEDACKMVLDNHNRAEMMSKIFVFGSNNLWPKKQVSYNFGPSFTSKEKYLI 70
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BLAST of EMLSAG00000001305 vs. L. salmonis peptides
Match: EMLSAP00000000529 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1082:34274:35257:-1 gene:EMLSAG00000000529 transcript:EMLSAT00000000529 description:"maker-LSalAtl2s1082-augustus-gene-0.6")

HSP 1 Score: 88.9669 bits (219), Expect = 1.875e-23
Identity = 46/70 (65.71%), Postives = 56/70 (80.00%), Query Frame = 0 
Query:    1 MITYVLLLSLLSILVQPYHAEDPCNMVLDNHNRAEMLSRNFVFGSNNPWPKKQVSYTFGPSFTSKEKSLI 70
            MITY+LLLS+ SIL+ PY AE+ C M++D HNRAEM+S+NFVFG+NN WP KQV Y FG  FTS EK +I
Sbjct:    4 MITYLLLLSVSSILIPPYQAEEACRMMIDKHNRAEMMSKNFVFGNNNLWPDKQVPYVFGTRFTSSEKKMI 73
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BLAST of EMLSAG00000001305 vs. L. salmonis peptides
Match: EMLSAP00000004531 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2375:4575:5187:1 gene:EMLSAG00000004531 transcript:EMLSAT00000004531 description:"maker-LSalAtl2s2375-snap-gene-0.0")

HSP 1 Score: 77.411 bits (189), Expect = 7.194e-20
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 0 
Query:   27 VLDNHNRAEMLSRNFVFGSNNPWPKKQVSYTFGPSFTSKEKSLI 70
            +LD HN+AEM+SRNFVFGSNN WP KQV +TFGPSFTS E+SLI
Sbjct:    1 MLDKHNKAEMMSRNFVFGSNNLWPNKQVPFTFGPSFTSNERSLI 44
[Close]
BLAST of EMLSAG00000001305 vs. L. salmonis peptides
Match: EMLSAP00000007463 (pep:novel supercontig:LSalAtl2s:LSalAtl2s427:23035:25185:1 gene:EMLSAG00000007463 transcript:EMLSAT00000007463 description:"maker-LSalAtl2s427-augustus-gene-0.3")

HSP 1 Score: 51.6026 bits (122), Expect = 1.992e-9
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 0 
Query:   21 EDPCNMVLDNHNRAEMLSRNFVFGSNNPWPKKQVSYTFGPSFTSKEKSLI 70
            E  C +++D H+RA M SRNF+ G +N WP   V YT   +F+S ++  I
Sbjct:   27 EGSCRVLVDAHDRAAMYSRNFIGGRSNRWPNGIVPYTISSNFSSSQRQTI 76
[Close]
BLAST of EMLSAG00000001305 vs. L. salmonis peptides
Match: EMLSAP00000006562 (pep:novel supercontig:LSalAtl2s:LSalAtl2s35:27234:28536:-1 gene:EMLSAG00000006562 transcript:EMLSAT00000006562 description:"maker-LSalAtl2s35-augustus-gene-0.13")

HSP 1 Score: 48.1358 bits (113), Expect = 3.250e-8
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 0 
Query:   24 CNMVLDNHNRAEMLSRNFVFGSNNPWPKKQVSYTFGPSFTSKEKSLI 70
            C +++D ++RA M SRNF+ G +N WP   V YT    F+S ++  I
Sbjct:   30 CRVLVDAYDRAAMYSRNFIGGRSNRWPNGIVPYTISSDFSSSQRQTI 76
[Close]
BLAST of EMLSAG00000001305 vs. L. salmonis peptides
Match: EMLSAP00000011131 (pep:novel supercontig:LSalAtl2s:LSalAtl2s756:274080:275679:1 gene:EMLSAG00000011131 transcript:EMLSAT00000011131 description:"maker-LSalAtl2s756-augustus-gene-2.11")

HSP 1 Score: 46.9802 bits (110), Expect = 9.656e-8
Identity = 20/50 (40.00%), Postives = 29/50 (58.00%), Query Frame = 0 
Query:   21 EDPCNMVLDNHNRAEMLSRNFVFGSNNPWPKKQVSYTFGPSFTSKEKSLI 70
            E  C ++L  ++RA M SRNF+ G +N WP   V Y    +FTS ++  I
Sbjct:   40 EGSCKVLLGAYDRAAMYSRNFIGGRSNRWPNGIVPYIISSNFTSSQRQTI 89
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001305 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001305 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592795446|gb|GAXK01159122.1|2.084e+029.41TSA: Calanus finmarchicus comp3800263_c0_seq1 tran... [more]
gi|592954695|gb|GAXK01003858.1|4.463e+052.63TSA: Calanus finmarchicus comp2093481_c1_seq1 tran... [more]
gi|592940370|gb|GAXK01018183.1|7.534e+033.33TSA: Calanus finmarchicus comp32024_c0_seq1 transc... [more]
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BLAST of EMLSAG00000001305 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 14
Match NameE-valueIdentityDescription
EMLSAP000000013051.335e-47100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1217:7537... [more]
EMLSAP000000081564.207e-4290.00pep:novel supercontig:LSalAtl2s:LSalAtl2s488:31850... [more]
EMLSAP000000036086.683e-3371.43pep:novel supercontig:LSalAtl2s:LSalAtl2s197:43966... [more]
EMLSAP000000096051.376e-3170.00pep:novel supercontig:LSalAtl2s:LSalAtl2s617:5548:... [more]
EMLSAP000000099071.123e-2984.29pep:novel supercontig:LSalAtl2s:LSalAtl2s645:36339... [more]
EMLSAP000000005291.875e-2365.71pep:novel supercontig:LSalAtl2s:LSalAtl2s1082:3427... [more]
EMLSAP000000045317.194e-2077.27pep:novel supercontig:LSalAtl2s:LSalAtl2s2375:4575... [more]
EMLSAP000000074631.992e-942.00pep:novel supercontig:LSalAtl2s:LSalAtl2s427:23035... [more]
EMLSAP000000065623.250e-840.43pep:novel supercontig:LSalAtl2s:LSalAtl2s35:27234:... [more]
EMLSAP000000111319.656e-840.00pep:novel supercontig:LSalAtl2s:LSalAtl2s756:27408... [more]

Pages

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BLAST of EMLSAG00000001305 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001305 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001305 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001305 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1217supercontigLSalAtl2s1217:75372..75658 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1217-snap-gene-1.13
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001305 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001305EMLSAT00000001305-697152Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1217:75372..75658-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001305-684071 ID=EMLSAG00000001305-684071|Name=EMLSAG00000001305|organism=Lepeophtheirus salmonis|type=gene|length=287bp|location=Sequence derived from alignment at LSalAtl2s1217:75372..75658- (Lepeophtheirus salmonis)
ACAGAAGAATAAAGATGATTACTTATGTTTTACTTCTGAGTCTTTTATCT
ATCCTCGTTCAGCCTTACCACGCTGAAGGTCAAAATTGAAAAGGTTTGAT
AACATTTATACAAATTAATATTTTTGTTCCTGTTTATACAGATCCCTGCA
ATATGGTGCTTGACAACCATAATAGGGCTGAAATGTTGTCCAGAAATTTT
GTTTTTGGTAGCAACAATCCCTGGCCTAAAAAACAAGTATCTTATACCTT
TGGACCAAGTTTTACATCTAAGGAAAAGTCCTTGATT
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