EMLSAG00000002145, EMLSAG00000002145-684911 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002145
Unique NameEMLSAG00000002145-684911
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002145 vs. C. finmarchicus
Match: gi|592757930|gb|GAXK01196483.1| (TSA: Calanus finmarchicus comp577599_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 3.643e-1
Identity = 19/51 (37.25%), Postives = 31/51 (60.78%), Query Frame = 0 
Query:   35 TRVDTNVKKASHAILNE--LKPIFGVQKDCELEIINIDNVQSNIDPEDRVF 83
            T V+T+VK  S  ++ E  +KP    +++  LE IN+D  +S  DP+D+ F
Sbjct:   52 TSVETSVKTLSGILVEEEEVKPKGNTKRNMTLEEINVDKTESKEDPKDKRF 204
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BLAST of EMLSAG00000002145 vs. C. finmarchicus
Match: gi|592757931|gb|GAXK01196482.1| (TSA: Calanus finmarchicus comp577599_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 3.646e-1
Identity = 19/51 (37.25%), Postives = 31/51 (60.78%), Query Frame = 0 
Query:   35 TRVDTNVKKASHAILNE--LKPIFGVQKDCELEIINIDNVQSNIDPEDRVF 83
            T V+T+VK  S  ++ E  +KP    +++  LE IN+D  +S  DP+D+ F
Sbjct:   52 TSVETSVKTLSGILVEEEEVKPKGNTKRNMTLEEINVDKTESKEDPKDKRF 204
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BLAST of EMLSAG00000002145 vs. C. finmarchicus
Match: gi|592811546|gb|GAXK01143022.1| (TSA: Calanus finmarchicus comp5783865_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 2.695e+0
Identity = 19/52 (36.54%), Postives = 28/52 (53.85%), Query Frame = 0 
Query:   44 ASHAILNELKPIF--GVQKDCELEIINIDNVQSNIDPEDRVFKMDLLLLSSS 93
            A   ILN    +F   +Q+DC     +I NV SNI  +  +FK+  +LLS +
Sbjct:  195 AILTILNVFNCLFEISIQQDCLFIFFSIFNVCSNILLKLNIFKLSWMLLSDT 350
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BLAST of EMLSAG00000002145 vs. C. finmarchicus
Match: gi|592929017|gb|GAXK01029528.1| (TSA: Calanus finmarchicus comp150073_c2_seq12 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.856e+0
Identity = 12/26 (46.15%), Postives = 19/26 (73.08%), Query Frame = 0 
Query:   61 DCELEIINIDNVQSNIDPEDRVFKMD 86
            DC LE++N+  VQ +I P  R+FK++
Sbjct:  624 DCNLELVNVFLVQRDIHPLTRIFKLN 701
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BLAST of EMLSAG00000002145 vs. C. finmarchicus
Match: gi|592929018|gb|GAXK01029527.1| (TSA: Calanus finmarchicus comp150073_c2_seq11 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.897e+0
Identity = 12/26 (46.15%), Postives = 19/26 (73.08%), Query Frame = 0 
Query:   61 DCELEIINIDNVQSNIDPEDRVFKMD 86
            DC LE++N+  VQ +I P  R+FK++
Sbjct:  624 DCNLELVNVFLVQRDIHPLTRIFKLN 701
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BLAST of EMLSAG00000002145 vs. C. finmarchicus
Match: gi|592929019|gb|GAXK01029526.1| (TSA: Calanus finmarchicus comp150073_c2_seq10 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 3.006e+0
Identity = 12/26 (46.15%), Postives = 19/26 (73.08%), Query Frame = 0 
Query:   61 DCELEIINIDNVQSNIDPEDRVFKMD 86
            DC LE++N+  VQ +I P  R+FK++
Sbjct:  624 DCNLELVNVFLVQRDIHPLTRIFKLN 701
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BLAST of EMLSAG00000002145 vs. L. salmonis peptides
Match: EMLSAP00000002145 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1460230:1461759:-1 gene:EMLSAG00000002145 transcript:EMLSAT00000002145 description:"maker-LSalAtl2s139-augustus-gene-14.28")

HSP 1 Score: 382.489 bits (981), Expect = 2.469e-136
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0 
Query:    1 MRTLLDSYFVCFVNFIQIGLKSSSSIINSEIFINTRVDTNVKKASHAILNELKPIFGVQKDCELEIINIDNVQSNIDPEDRVFKMDLLLLSSSTNGSCGLHIKNCLDVQIHMNEGISYELELQVEVESDLTDCPYKFKNCNGVKVFQPYPNLCPNKKFCLLPQNLEKTTCISIIDSILFTTPLSDTKNEI 190
            MRTLLDSYFVCFVNFIQIGLKSSSSIINSEIFINTRVDTNVKKASHAILNELKPIFGVQKDCELEIINIDNVQSNIDPEDRVFKMDLLLLSSSTNGSCGLHIKNCLDVQIHMNEGISYELELQVEVESDLTDCPYKFKNCNGVKVFQPYPNLCPNKKFCLLPQNLEKTTCISIIDSILFTTPLSDTKNEI
Sbjct:    1 MRTLLDSYFVCFVNFIQIGLKSSSSIINSEIFINTRVDTNVKKASHAILNELKPIFGVQKDCELEIINIDNVQSNIDPEDRVFKMDLLLLSSSTNGSCGLHIKNCLDVQIHMNEGISYELELQVEVESDLTDCPYKFKNCNGVKVFQPYPNLCPNKKFCLLPQNLEKTTCISIIDSILFTTPLSDTKNEI 190
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BLAST of EMLSAG00000002145 vs. L. salmonis peptides
Match: EMLSAP00000004427 (pep:novel supercontig:LSalAtl2s:LSalAtl2s231:166619:167331:1 gene:EMLSAG00000004427 transcript:EMLSAT00000004427 description:"maker-LSalAtl2s231-augustus-gene-1.7")

HSP 1 Score: 70.8626 bits (172), Expect = 7.892e-16
Identity = 42/113 (37.17%), Postives = 57/113 (50.44%), Query Frame = 0 
Query:   67 INIDNVQSNIDPEDRVFKMD---LLLLSSSTNGSCGLHIKNCLDVQIHMNEGISYELELQVEVESDLTDCPYKFKNCNGVKVFQPYPNLCPNKKFCLLPQNLEKTTCISIIDS 176
            + I + Q   DPE +   ++    L     T+ +C L+IK+ +           YELELQVE      DC Y  KNC  ++V QP  NLCP  +FCL P+NL    C+ II S
Sbjct:   26 VPIKSTQDVSDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQFCLFPENLNNINCVDIILS 138
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BLAST of EMLSAG00000002145 vs. L. salmonis peptides
Match: EMLSAP00000002144 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1454355:1455102:1 gene:EMLSAG00000002144 transcript:EMLSAT00000002144 description:"maker-LSalAtl2s139-augustus-gene-14.23")

HSP 1 Score: 69.3218 bits (168), Expect = 2.466e-15
Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 0 
Query:   97 SCGLHIKNCLDVQIHMNEGISYELELQVEVESDLTDCPYKFKNCNGVKVFQPYPNLCPNKKFCLLPQNLEKTTCISI 173
            +C L++K+ +  +        YELELQVE      DC Y FKNC  ++V +P  NLCP  +FCL+P+NL+   C+ I
Sbjct:   59 ACPLYVKDVIQAKKQSFPSTVYELELQVETNGADFDCDYVFKNCANIRVQEPPINLCPGNQFCLIPENLKGIDCVDI 135
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BLAST of EMLSAG00000002145 vs. L. salmonis peptides
Match: EMLSAP00000002147 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1478126:1479135:-1 gene:EMLSAG00000002147 transcript:EMLSAT00000002147 description:"maker-LSalAtl2s139-augustus-gene-14.29")

HSP 1 Score: 68.9366 bits (167), Expect = 8.947e-15
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 0 
Query:   94 TNGSCGLHIKNCLDVQIHM-NEGISYELELQVEVESDLTDCPYKFKNCNGVKVFQPYPNLCPNKKFCLLPQNLEKTTCISI 173
            T  +C +H++  +  +  + ++ I+YE+ELQVE      DC Y  KNC+ VK+ QP  +LCP KKFCL+P  L +  C+ I
Sbjct:  157 TTNACPIHLREVVRAKRQLISDSINYEIELQVETNGADFDCEYVHKNCDNVKLHQPPLHLCPGKKFCLIPVKLNEINCVEI 237
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BLAST of EMLSAG00000002145 vs. L. salmonis peptides
Match: EMLSAP00000002146 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1473318:1476139:1 gene:EMLSAG00000002146 transcript:EMLSAT00000002146 description:"snap_masked-LSalAtl2s139-processed-gene-14.16")

HSP 1 Score: 64.6994 bits (156), Expect = 3.681e-13
Identity = 32/79 (40.51%), Postives = 45/79 (56.96%), Query Frame = 0 
Query:   94 TNGSCGLHIKNCLDVQIHMNEGISYELELQVEVESDLTDCPYKFKNCNGVKVFQPYPNLCP-NKKFCLLPQNLEKTTCI 171
            T   C LH+   L     M+ GI+Y L+++VE       C ++ K+C  V++ QP P+LCP  K FCL+P NL   TCI
Sbjct:  183 TTHPCPLHVTKILHASEQMDHGINYLLDIEVETNEIDFYCEHEVKHCKSVQLHQPSPHLCPFGKHFCLIPTNLNDVTCI 261
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BLAST of EMLSAG00000002145 vs. L. salmonis peptides
Match: EMLSAP00000007005 (pep:novel supercontig:LSalAtl2s:LSalAtl2s398:305820:307985:1 gene:EMLSAG00000007005 transcript:EMLSAT00000007005 description:"maker-LSalAtl2s398-snap-gene-3.25")

HSP 1 Score: 56.225 bits (134), Expect = 7.532e-10
Identity = 30/91 (32.97%), Postives = 49/91 (53.85%), Query Frame = 0 
Query:   94 TNGSCGLHIKNCLDVQIHMNEGISYELELQVEVESDLTDCPYKFKNCNGVKVFQPYPNLCPNKK-FCLLPQNLEKTTCISIIDSILFTTPL 183
            T+  C LH+   +  +     G +YELE+QVE      DC +  KNC  V+V +P    CP+++  C++P  L+   CI  +++I   TP+
Sbjct:  167 TSNPCPLHLVEVIRAKQQAVMGFNYELEIQVETNGADFDCEHIIKNCENVRVHEPIAEFCPHEEPSCVVPVRLQDVDCIE-VNTIFNETPI 256

HSP 2 Score: 46.9802 bits (110), Expect = 9.504e-7
Identity = 27/78 (34.62%), Postives = 39/78 (50.00%), Query Frame = 0 
Query:   94 TNGSCGLHIKNCLDVQIHMNEGISYELELQVEVESDLTDCPYKFKNCNGVKVFQPYPNLCP-NKKFCLLPQNLEKTTC 170
            TN +C +H+    D QI  N    Y +E Q+E       C    KNC  V+V +  P LCP N   C++P+ L++  C
Sbjct:  384 TNIACQVHVN---DAQILKNVNDVYHMEFQLETRKSEEGCKSIKKNCKNVRVREIKPQLCPHNNPICIVPEQLDEVEC 458
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BLAST of EMLSAG00000002145 vs. L. salmonis peptides
Match: EMLSAP00000002142 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1427481:1429315:-1 gene:EMLSAG00000002142 transcript:EMLSAT00000002142 description:"snap_masked-LSalAtl2s139-processed-gene-14.19")

HSP 1 Score: 48.9062 bits (115), Expect = 1.941e-7
Identity = 21/77 (27.27%), Postives = 45/77 (58.44%), Query Frame = 0 
Query:   94 TNGSCGLHIKNCLDVQIHMNEGISYELELQVEVESDLTDCPYKFKNCNGVKVFQPYPNLCPNKKFCLLPQNLEKTTC 170
            T+ +C +H++  +     + +G +Y+LE+QVE +    +C Y  K C+ + V +P  +   +++ C+LP +L++  C
Sbjct:  173 TSSACPIHLREVVQASEQIVDGTNYKLEIQVETDGANFECEYVQKQCSNIIVHEPLAHCPHDEEDCILPVDLQEVEC 249
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002145 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002145 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592757930|gb|GAXK01196483.1|3.643e-137.25TSA: Calanus finmarchicus comp577599_c0_seq2 trans... [more]
gi|592757931|gb|GAXK01196482.1|3.646e-137.25TSA: Calanus finmarchicus comp577599_c0_seq1 trans... [more]
gi|592811546|gb|GAXK01143022.1|2.695e+036.54TSA: Calanus finmarchicus comp5783865_c0_seq1 tran... [more]
gi|592929017|gb|GAXK01029528.1|2.856e+046.15TSA: Calanus finmarchicus comp150073_c2_seq12 tran... [more]
gi|592929018|gb|GAXK01029527.1|2.897e+046.15TSA: Calanus finmarchicus comp150073_c2_seq11 tran... [more]
gi|592929019|gb|GAXK01029526.1|3.006e+046.15TSA: Calanus finmarchicus comp150073_c2_seq10 tran... [more]
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BLAST of EMLSAG00000002145 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 7
Match NameE-valueIdentityDescription
EMLSAP000000021452.469e-136100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s139:14602... [more]
EMLSAP000000044277.892e-1637.17pep:novel supercontig:LSalAtl2s:LSalAtl2s231:16661... [more]
EMLSAP000000021442.466e-1541.56pep:novel supercontig:LSalAtl2s:LSalAtl2s139:14543... [more]
EMLSAP000000021478.947e-1540.74pep:novel supercontig:LSalAtl2s:LSalAtl2s139:14781... [more]
EMLSAP000000021463.681e-1340.51pep:novel supercontig:LSalAtl2s:LSalAtl2s139:14733... [more]
EMLSAP000000070057.532e-1032.97pep:novel supercontig:LSalAtl2s:LSalAtl2s398:30582... [more]
EMLSAP000000021421.941e-727.27pep:novel supercontig:LSalAtl2s:LSalAtl2s139:14274... [more]
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BLAST of EMLSAG00000002145 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002145 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002145 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002145 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s139supercontigLSalAtl2s139:1460230..1461759 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s139-augustus-gene-14.28
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002145 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002145EMLSAT00000002145-697992Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s139:1460230..1461759-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002145-684911 ID=EMLSAG00000002145-684911|Name=EMLSAG00000002145|organism=Lepeophtheirus salmonis|type=gene|length=1530bp|location=Sequence derived from alignment at LSalAtl2s139:1460230..1461759- (Lepeophtheirus salmonis)
ATGAGAACTTTACTTGACTCTTATTTTGTTTGCTTCGTAAATTTTATACA
AATTGGTAAGACGTTTAATTAATTGTACACTATAGTAAGTAAGATTTATT
TTTTAAAAGGTCTAAAATCTTCATCGAGTATAATAAATTCAGAAATATTT
ATAAATACTAGAGTCGACACGAACGTAAAAAAAGCTTCTCATGCGATTTT
AAATGAACTTAAACCCATATTTGGTGTACAAAAGGATTGTGAATTAGAGA
TTATCAACATTGACAATGTCCAGTCAAATATTGTAATATCAATAGATTAA
TTATTCTCTTGAGCACATATGTATATATTTAAATAATGTAATTATGTTCA
TCTTAGGATCCTGAAGATAGAGTTTTTAAAATGGACTTACTTCTACTGAG
CTCATCAACTAATGGATCCTGCGGACTGCATATCAAAAATTGCTTAGACG
TTCAAATTCATGTGATTGATGACAAGTGCAAAAAGTTTGTTGAGGATTGC
TACTTTCTTGAAGAAACTAAGCGTATTACATGTATTACTGATAATGTTGG
TAAGAAAAACATTGTTTTATATACATTTGCATAGGCGTACAAAGGGGGTT
ACCTGGAGGGGCTGTAGCTTTCCCCCTCCCAAATCCAAATTTTCAAAAAA
AAATAATTTTCTATGAAAAGGTTTAGATTTTTGAAAAAAAAATTTAAAAA
ATTTAATACTAATAATTAATTTTTGAATTTTTTTCCTACAAAAATTATAT
TTCTTATAAGCTGGAGTGAATTTTTACAATTCTTTGCTGATATCTTTAGA
CTTTTGAAATTATTTTCCAAGAAAAAATCTTTTTTTTTTGTGAATAGCTG
TAGGTTTTTGAAGGTATATTCGAAAAAATTAATAATTTGAAATTTATTTT
TTGAAATTTTTTATGATCAGCTGTGGACTTTAGAATTTTTTTTCACAATT
TTTAATTTTTGGAAAAACCATGCCCCCCCCACCCCAAAAAAAATAAATAA
TAATATGTATTTATTCCTCGGGAGACCCCTGATTTGTCTCTCTCCATATA
ATTAATTAATTGTCATTAGATTTAGGGACTCCTAAGCCCTATCATGAGAT
TCCGGATCCTTCATCTAATGAAATTATTCAAAAGGTAGCCCAAGAAGCCA
CAGAGTTTCTTCATGGTTTCTTTAATGTCTCCAAACATTGTCCTCTTTTT
GTTCGAGATATAATTAGTGCCCGGGAACAAGTTTGTATCAGCATTTAACG
TAAACAAAAGTGCTTAAAAAAAAATATTACCACTTTCTAGATGAACGAAG
GCATCAGCTACGAATTAGAACTTCAAGTTGAGGTAGAATCGGATTTAACC
GACTGTCCTTATAAATTTAAAAACTGTAATGGCGTCAAAGTTTTTCAACC
ATATCCAAACTTGTGTCCAAATAAGAAGTTTTGCCTACTACCTCAAAATT
TGGAGAAAACCACTTGCATCTCAATCATTGACAGTATTTTATTTACTACT
CCTCTTTCAGACACTAAAAATGAAATTTAA
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