EMLSAG00000002147, EMLSAG00000002147-684913 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000002147 vs. C. finmarchicus
Match: gi|592889756|gb|GAXK01068619.1| (TSA: Calanus finmarchicus comp2832832_c0_seq1 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 3.555e-3 Identity = 28/95 (29.47%), Postives = 51/95 (53.68%), Query Frame = 0 Query: 46 EIYNAKLHVSKESIYDLTMKLTVM-GPGC-EPETKTCSSVKIFIPQPQYCEDPSGICHNLTETYEIQCTPELVVDPAVPSINEDFEDVPNAHTDP 138 ++ +A V + Y LT++++ + G C + +T CS+V +F P P C++ +G C L+ +I+CT E V P++ D ++H DP Sbjct: 157 KVLDAVSQVVAGTNYILTLEVSALVGADCNQVQTSICSNVIVFRPLPFLCQEDAGSCDELSWPEDIRCTTEGVEQVPSPAV-----DPSSSHVDP 426
BLAST of EMLSAG00000002147 vs. C. finmarchicus
Match: gi|592889755|gb|GAXK01068620.1| (TSA: Calanus finmarchicus comp2832832_c0_seq2 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 1.103e-1 Identity = 21/68 (30.88%), Postives = 36/68 (52.94%), Query Frame = 0 Query: 46 EIYNAKLHVSKESIYDLTMKLTVM-GPGCEP-ETKTCSSVKIFIPQPQYCEDPSGICHNLTETYEIQC 111 ++ +A V + Y LT++++V+ G C+ +T CS+V +F P P C+ G C L+ I C Sbjct: 211 KVLDAVSQVVAGTNYILTLEVSVLVGANCDQVQTSICSNVVVFRPLPFQCQGDVGSCDQLSRPQGIMC 414
BLAST of EMLSAG00000002147 vs. L. salmonis peptides
Match: EMLSAP00000002147 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1478126:1479135:-1 gene:EMLSAG00000002147 transcript:EMLSAT00000002147 description:"maker-LSalAtl2s139-augustus-gene-14.29") HSP 1 Score: 498.049 bits (1281), Expect = 3.577e-180 Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0 Query: 1 SATSPPFRIYEPIAVDESVRTVASKVVDQLKSYFGVREECQLIIEEIYNAKLHVSKESIYDLTMKLTVMGPGCEPETKTCSSVKIFIPQPQYCEDPSGICHNLTETYEIQCTPELVVDPAVPSINEDFEDVPNAHTDPILKEIGEEATKFLYHKFDTTNACPIHLREVVRAKRQLISDSINYEIELQVETNGADFDCEYVHKNCDNVKLHQPPLHLCPGKKFCLIPVKLNEINCVEINQIFFR 243 SATSPPFRIYEPIAVDESVRTVASKVVDQLKSYFGVREECQLIIEEIYNAKLHVSKESIYDLTMKLTVMGPGCEPETKTCSSVKIFIPQPQYCEDPSGICHNLTETYEIQCTPELVVDPAVPSINEDFEDVPNAHTDPILKEIGEEATKFLYHKFDTTNACPIHLREVVRAKRQLISDSINYEIELQVETNGADFDCEYVHKNCDNVKLHQPPLHLCPGKKFCLIPVKLNEINCVEINQIFFR Sbjct: 1 SATSPPFRIYEPIAVDESVRTVASKVVDQLKSYFGVREECQLIIEEIYNAKLHVSKESIYDLTMKLTVMGPGCEPETKTCSSVKIFIPQPQYCEDPSGICHNLTETYEIQCTPELVVDPAVPSINEDFEDVPNAHTDPILKEIGEEATKFLYHKFDTTNACPIHLREVVRAKRQLISDSINYEIELQVETNGADFDCEYVHKNCDNVKLHQPPLHLCPGKKFCLIPVKLNEINCVEINQIFFR 243
BLAST of EMLSAG00000002147 vs. L. salmonis peptides
Match: EMLSAP00000002142 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1427481:1429315:-1 gene:EMLSAG00000002142 transcript:EMLSAT00000002142 description:"snap_masked-LSalAtl2s139-processed-gene-14.19") HSP 1 Score: 176.022 bits (445), Expect = 2.498e-52 Identity = 89/231 (38.53%), Postives = 142/231 (61.47%), Query Frame = 0 Query: 15 VDESVRTVASKVVDQLKSYFGVREECQLIIEEIYNAKLHVSKESIYDLTMKLTVMGPGCEPETKTCSSVKIFIPQPQYCEDPSGICHNLTETYEIQCTPELVVDPAVPSINEDFEDVPNAHTDPILKEIGEEATKFLYHKFDTTNACPIHLREVVRAKRQLISDSINYEIELQVETNGADFDCEYVHKNCDNVKLHQPPLHLCPGKKFCLIPVKLNEINCVEI---NQIFF 242 + + V VA +V+DQL S+FG + C L +E I + K V + Y +++++ G CE E K CS VK++ P P C C +L E+ +I C P DP P + ++ + N + ++++ ++A KFLYH F+T++ACPIHLREVV+A Q++ D NY++E+QVET+GA+F+CEYV K C N+ +H+P H ++ C++PV L E+ C E+ N ++F Sbjct: 33 ISDEVSGVAEEVLDQLASHFGAEDGCSLKLENITDVKTQVVAGTNYLFSLEISSDGESCENEVKICSDVKVYKPLPFACSSRIDTCLSLVESEKILCIPSTNEDP--PLVIGEYSSIENVTENEEIQKVAQKAVKFLYHLFNTSSACPIHLREVVQASEQIV-DGTNYKLEIQVETDGANFECEYVQKQCSNIIVHEPLAHCPHDEEDCILPVDLQEVECKELQKDNAVYF 260
BLAST of EMLSAG00000002147 vs. L. salmonis peptides
Match: EMLSAP00000002146 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1473318:1476139:1 gene:EMLSAG00000002146 transcript:EMLSAT00000002146 description:"snap_masked-LSalAtl2s139-processed-gene-14.16") HSP 1 Score: 163.31 bits (412), Expect = 9.228e-49 Identity = 85/233 (36.48%), Postives = 143/233 (61.37%), Query Frame = 0 Query: 8 RIYEPIAVDESVRTVASKVVDQLKSYFGV-REECQLIIEEIYNAKLHVSKESIYDLTMKLTVMGPGCEPETKTCSSVKIFIPQPQYCEDPSGICHNLTETYEIQCTPELVVDPAVPSINEDFE---DVPNAHTDPILKEIGEEATKFLYHKFDTTNACPIHLREVVRAKRQLISDSINYEIELQVETNGADFDCEYVHKNCDNVKLHQPPLHLCP-GKKFCLIPVKLNEINCV 235 ++ PI + +V T+A V++++K Y+G+ EC+L + IY+A+ +S+E + L +K++ +G C ETKTC V + + C + C L + I C P+L V EDF ++ + ++P+++++ +E+T FLYH F+TT+ CP+H+ +++ A Q+ INY ++++VETN DF CE+ K+C +V+LHQP HLCP GK FCLIP LN++ C+ Sbjct: 35 EVFSPIPIHGAVLTIADSVLEEIKPYYGILGHECELTXDHIYHAESSISQEIKFKLDLKISSIGTHCIEETKTCIGVTVLVIPIDICSESYQPCFKLIDRDNILCIPDLSVHRY-----EDFNFYTEILDPSSNPMIQKVAQESTNFLYHFFNTTHPCPLHVTKILHASEQM-DHGINYLLDIEVETNEIDFYCEHEVKHCKSVQLHQPSPHLCPFGKHFCLIPTNLNDVTCI 261
BLAST of EMLSAG00000002147 vs. L. salmonis peptides
Match: EMLSAP00000007005 (pep:novel supercontig:LSalAtl2s:LSalAtl2s398:305820:307985:1 gene:EMLSAG00000007005 transcript:EMLSAT00000007005 description:"maker-LSalAtl2s398-snap-gene-3.25") HSP 1 Score: 155.221 bits (391), Expect = 5.072e-44 Identity = 88/241 (36.51%), Postives = 140/241 (58.09%), Query Frame = 0 Query: 2 ATSPPFRIYEPIAVDESVRTVASKVVDQLKSYFGVREECQLIIEEIYNAKLHVSKESIYDLTMKLTVMGPGCEPETKTCSSVKIFIPQPQYCEDPSGICHNLTETYEIQCTPELVVDPAVPSINEDFEDVPNAHTDPILKEIGEEATKFLYHKFDTTNACPIHLREVVRAKRQLISDSINYEIELQVETNGADFDCEYVHKNCDNVKLHQPPLHLCPGKK-FCLIPVKLNEINCVEINQIF 241 TSP F I + A+ + QLK +F C L I+E+ + ++S + + M L + + ++ CS+V +P+ CE C NL + + CT VV+ F ++ H+DPI+ + ++ATK+LY FDT+N CP+HL EV+RAK+Q + NYE+E+QVETNGADFDCE++ KNC+NV++H+P CP ++ C++PV+L +++C+E+N IF Sbjct: 24 GTSPSFEDIPIIFSNNDDFVTATSGLTQLKQFFKSDVNCPLAIQEVIGSHTNIS-DGFINTFMDLKIFS---KCGSQFCSNVHF--QKPENCES----CENLVDVSNVDCTYVSVVEEGF--FAGGFTNIEAPHSDPIILNVAKKATKYLYGFFDTSNPCPLHLVEVIRAKQQAVM-GFNYELEIQVETNGADFDCEHIIKNCENVRVHEPIAEFCPHEEPSCVVPVRLQDVDCIEVNTIF 251 HSP 2 Score: 108.612 bits (270), Expect = 1.666e-27 Identity = 65/221 (29.41%), Postives = 114/221 (51.58%), Query Frame = 0 Query: 15 VDESVRTVASKVVDQLKSYFGVREECQLIIEEIYNAKLHVSKESIYDLTMKLTVMGPGCEPETKTCSSVKIFIPQPQYCEDPSGICHNLTETYEIQCTPELVVDPAVPSINEDFEDVPNAHTDPILKEIGEEATKFLYHKFDTTNACPIHLREVVRAKRQLISDSINYEIELQVETNGADFDCEYVHKNCDNVKLHQPPLHLCPGKK-FCLIPVKLNEINC 234 +DE + ++ V+DQ+ + FG++ C L E ++ A+ V + + + ++ + G C E K C +VKIF P P C++ C +LT++ +I C P ++ + + +GEEA KF YH FDT AC +H+ + K ++D Y +E Q+ET ++ C+ + KNC NV++ + LCP C++P +L+E+ C Sbjct: 265 IDEEIISIGKGVMDQIPNSFGLKNHCYLNFENVHRAQSQVVAGTNFIMDIEFSTHGIHCPTEHKICYNVKIFRPLPYQCQEDK--CLSLTQSEDINCVP---IEASKSQL------------------LGEEAAKFFYHFFDTNIACQVHVNDAQILKN--VNDV--YHMEFQLETRKSEEGCKSIKKNCKNVRVREIKPQLCPHNNPICIVPEQLDEVEC 458
BLAST of EMLSAG00000002147 vs. L. salmonis peptides
Match: EMLSAP00000002144 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1454355:1455102:1 gene:EMLSAG00000002144 transcript:EMLSAT00000002144 description:"maker-LSalAtl2s139-augustus-gene-14.23") HSP 1 Score: 133.265 bits (334), Expect = 1.410e-38 Identity = 56/102 (54.90%), Postives = 83/102 (81.37%), Query Frame = 0 Query: 140 LKEIGEEATKFLYHKFDTTNACPIHLREVVRAKRQLISDSINYEIELQVETNGADFDCEYVHKNCDNVKLHQPPLHLCPGKKFCLIPVKLNEINCVEINQIF 241 ++++ E+TKFLYH FD +NACP+++++V++AK+Q ++ YE+ELQVETNGADFDC+YV KNC N+++ +PP++LCPG +FCLIP L I+CV+IN F Sbjct: 39 IQKVALESTKFLYHLFDXSNACPLYVKDVIQAKKQSFPSTV-YELELQVETNGADFDCDYVFKNCANIRVQEPPINLCPGNQFCLIPENLKGIDCVDINLTF 139
BLAST of EMLSAG00000002147 vs. L. salmonis peptides
Match: EMLSAP00000004427 (pep:novel supercontig:LSalAtl2s:LSalAtl2s231:166619:167331:1 gene:EMLSAG00000004427 transcript:EMLSAT00000004427 description:"maker-LSalAtl2s231-augustus-gene-1.7") HSP 1 Score: 132.88 bits (333), Expect = 1.580e-38 Identity = 57/102 (55.88%), Postives = 80/102 (78.43%), Query Frame = 0 Query: 136 TDPILKEIGEEATKFLYHKFDTTNACPIHLREVVRAKRQLISDSINYEIELQVETNGADFDCEYVHKNCDNVKLHQPPLHLCPGKKFCLIPVKLNEINCVEI 237 +DP ++++ E TKFLYH FDT+ ACP+++++V+ A +Q ++ YE+ELQVETNGADFDC+YV KNC N+++ QPP +LCPG +FCL P LN INCV+I Sbjct: 35 SDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTV-YELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQFCLFPENLNNINCVDI 135
BLAST of EMLSAG00000002147 vs. L. salmonis peptides
Match: EMLSAP00000002145 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1460230:1461759:-1 gene:EMLSAG00000002145 transcript:EMLSAT00000002145 description:"maker-LSalAtl2s139-augustus-gene-14.28") HSP 1 Score: 68.9366 bits (167), Expect = 1.375e-14 Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 0 Query: 157 TTNACPIHLREVVRAKRQLISDSINYEIELQVETNGADFDCEYVHKNCDNVKLHQPPLHLCPGKKFCLIPVKLNEINCVEI 237 T +C +H++ + + + ++ I+YE+ELQVE DC Y KNC+ VK+ QP +LCP KKFCL+P L + C+ I Sbjct: 94 TNGSCGLHIKNCLDVQIHM-NEGISYELELQVEVESDLTDCPYKFKNCNGVKVFQPYPNLCPNKKFCLLPQNLEKTTCISI 173
BLAST of EMLSAG00000002147 vs. L. salmonis peptides
Match: EMLSAP00000003294 (pep:novel supercontig:LSalAtl2s:LSalAtl2s180:504339:505109:-1 gene:EMLSAG00000003294 transcript:EMLSAT00000003294 description:"maker-LSalAtl2s180-augustus-gene-4.20") HSP 1 Score: 68.9366 bits (167), Expect = 1.542e-14 Identity = 53/223 (23.77%), Postives = 98/223 (43.95%), Query Frame = 0 Query: 10 YEPIAVDESVRTVASKVVDQLKSYFGVREECQLIIEEIYNAKLHVSKESIYDLTMKLTVMGPGCEPETKTCSSVKIFIPQPQYCEDPSGICHNLTETYEIQCTPELVVDPAVPSINEDFEDVPNA-HTDPILKE---IGEEATKFLYHKFDTTNACPIHLREVVRAKRQLISDSINYEIELQVETNGADFDCEYVHKNCDNVKLHQPPLHLCPGKKF-CLIPV 227 +E + ++ +V +A + L+ + G C+L + I +A+L ++ Y ++ G C+ K C + I+IP+ C +C L I CT D N + +V N P + E + ++ KFLYH F T+ CP+ L+++ + Y+ L ++T + CE ++ C+NV + +P C + CL P+ Sbjct: 3 FEEVPINNTVTNIAKLSLRHLRHHLGFNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSG-SCKYSPKLCRFIIIYIPKK--CYKSEELCEVLIGKDRIMCTS---FDKHFFKPNTNHFEVKNTTFYQPDINEQLHLASKSVKFLYHYFSTSTFCPMELKKISNMT-SMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFPL 218
BLAST of EMLSAG00000002147 vs. L. salmonis peptides
Match: EMLSAP00000007342 (pep:novel supercontig:LSalAtl2s:LSalAtl2s415:245042:246857:-1 gene:EMLSAG00000007342 transcript:EMLSAT00000007342 description:"maker-LSalAtl2s415-augustus-gene-2.18") HSP 1 Score: 49.6766 bits (117), Expect = 3.591e-8 Identity = 30/107 (28.04%), Postives = 49/107 (45.79%), Query Frame = 0 Query: 10 YEPIAVDESVRTVASKVVDQLKSYFGV-REECQLIIEEIYNAKLHVSKESIYDLTMKLTVMGPGCEPETKTCSSVKIFIPQPQYCED--PSGICHNLTETYEIQCTP 113 +E +A V + V + S+FG + C L I +I NA+ + + + ++L G C E K C +++F P P C+D S C L+ I+C P Sbjct: 15 FETVADLNEAYEVVQETVPLIMSHFGADQSRCALYIRQIINAQQQIVSGANFRFDLELQSGGEECRGEIKLCKGIQVFRPLPYQCQDRTESYHCLELSRNSNIECVP 121
BLAST of EMLSAG00000002147 vs. L. salmonis peptides
Match: EMLSAP00000002143 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1444392:1447618:-1 gene:EMLSAG00000002143 transcript:EMLSAT00000002143 description:"snap_masked-LSalAtl2s139-processed-gene-14.13") HSP 1 Score: 50.447 bits (119), Expect = 4.984e-8 Identity = 28/102 (27.45%), Postives = 51/102 (50.00%), Query Frame = 0 Query: 13 IAVDESVRTVASKVVDQLKSYFGVREECQLIIEEIYNAKLHVSKESIYDLTMKLTVMGPGCEPETKTCSSVKIFIPQPQYCEDPSGICHNLTETYEIQCTPE 114 I V ES+ + + ++ LK YFGV + C L + +++ A++ Y + ++++ G C ETK C ++ I+ P C+ CH+ T C P+ Sbjct: 30 IPVTESIINITQQTLEGLKLYFGVEDHCDLKLHKVFCAQIMSHNSVNYLVDIRVSSHGYNCNKETKICQNLGIY--SPNNCKSD---CHHFYWTESSICIPD 126 The following BLAST results are available for this feature:
BLAST of EMLSAG00000002147 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000002147 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 2
BLAST of EMLSAG00000002147 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 10
BLAST of EMLSAG00000002147 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000002147 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000002147 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000002147 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s139:1478126..1479135- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000002147-684913 ID=EMLSAG00000002147-684913|Name=EMLSAG00000002147|organism=Lepeophtheirus salmonis|type=gene|length=1010bp|location=Sequence derived from alignment at LSalAtl2s139:1478126..1479135- (Lepeophtheirus salmonis)back to top Add to Basket
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