EMLSAG00000002488, EMLSAG00000002488-685254 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002488
Unique NameEMLSAG00000002488-685254
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000002488 vs. C. finmarchicus
Match: gi|592857615|gb|GAXK01099947.1| (TSA: Calanus finmarchicus comp252426_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 39.6614 bits (91), Expect = 6.472e-4
Identity = 20/41 (48.78%), Postives = 24/41 (58.54%), Query Frame = 0 
Query:   34 ATACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPIC 74
            A AC + NLR  DRYIC  +G + C+DGW     LC  P C
Sbjct: 1693 AEACSSRNLRNQDRYICTHDGKIKCLDGWI--GDLCQVPRC 1809
[Close]
BLAST of EMLSAG00000002488 vs. C. finmarchicus
Match: gi|592899750|gb|GAXK01058625.1| (TSA: Calanus finmarchicus comp588439_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 38.5058 bits (88), Expect = 9.212e-4
Identity = 16/40 (40.00%), Postives = 25/40 (62.50%), Query Frame = 0 
Query:   35 TACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPIC 74
            +AC    ++  DRY C  EG ++C +GWS+   +CS P+C
Sbjct:  146 SACSEWAVQSQDRYFCTMEGKIVCKEGWSW--NMCSGPMC 259
[Close]
BLAST of EMLSAG00000002488 vs. C. finmarchicus
Match: gi|592899751|gb|GAXK01058624.1| (TSA: Calanus finmarchicus comp588439_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 38.5058 bits (88), Expect = 9.427e-4
Identity = 16/40 (40.00%), Postives = 25/40 (62.50%), Query Frame = 0 
Query:   35 TACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPIC 74
            +AC    ++  DRY C  EG ++C +GWS+   +CS P+C
Sbjct:  146 SACSEWAVQSQDRYFCTMEGKIVCKEGWSW--NMCSGPMC 259
[Close]
BLAST of EMLSAG00000002488 vs. C. finmarchicus
Match: gi|592924578|gb|GAXK01033837.1| (TSA: Calanus finmarchicus comp82103_c6_seq1 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 2.469e-2
Identity = 16/41 (39.02%), Postives = 23/41 (56.10%), Query Frame = 0 
Query:   34 ATACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPIC 74
            A  CL++N++L  R  C  +G +IC  GW     LC + IC
Sbjct: 4116 AKICLSKNIQLHKRLTCTEDGQIICRPGWR--GALCDQAIC 4232
[Close]
BLAST of EMLSAG00000002488 vs. C. finmarchicus
Match: gi|592757915|gb|GAXK01196498.1| (TSA: Calanus finmarchicus comp577923_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 3.149e-2
Identity = 14/40 (35.00%), Postives = 23/40 (57.50%), Query Frame = 0 
Query:   35 TACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPIC 74
             AC    ++  DRY C  +G ++C +GWS+   +C  P+C
Sbjct:  573 AACSEWAVQSQDRYFCTLDGKIVCREGWSW--NMCQGPMC 686
[Close]
BLAST of EMLSAG00000002488 vs. C. finmarchicus
Match: gi|592757916|gb|GAXK01196497.1| (TSA: Calanus finmarchicus comp577923_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 3.838e-2
Identity = 14/39 (35.90%), Postives = 23/39 (58.97%), Query Frame = 0 
Query:   36 ACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPIC 74
            AC    ++  DRY C  +G ++C +GWS+   +C  P+C
Sbjct:  573 ACSEWAVQSQDRYFCTLDGKIVCREGWSW--NMCQGPMC 683
[Close]
BLAST of EMLSAG00000002488 vs. C. finmarchicus
Match: gi|592955036|gb|GAXK01003517.1| (TSA: Calanus finmarchicus comp2155496_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 6.547e-1
Identity = 16/45 (35.56%), Postives = 24/45 (53.33%), Query Frame = 0 
Query:   26 ITPLSRPGATACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCS 70
              P + PG  AC+      + +Y+CD  G   C+DG+   SKLC+
Sbjct:  479 FEPFACPGEDACI------SIQYLCD--GAADCLDGYDEDSKLCT 589
[Close]
BLAST of EMLSAG00000002488 vs. C. finmarchicus
Match: gi|592840365|gb|GAXK01117179.1| (TSA: Calanus finmarchicus comp303495_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 8.874e-1
Identity = 17/42 (40.48%), Postives = 19/42 (45.24%), Query Frame = 0 
Query:   43 RLTDRYICDSEGNVICVDGWSYPSKLCSEPICD---MNGRGC 81
            +   R  CD  G  IC  GW  P   CS P+C    MNG  C
Sbjct:  536 KCNSRGQCDVNGGCICRPGWEGP--FCSVPVCSPQCMNGGAC 655
[Close]
BLAST of EMLSAG00000002488 vs. C. finmarchicus
Match: gi|592840364|gb|GAXK01117180.1| (TSA: Calanus finmarchicus comp303495_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 8.942e-1
Identity = 17/42 (40.48%), Postives = 19/42 (45.24%), Query Frame = 0 
Query:   43 RLTDRYICDSEGNVICVDGWSYPSKLCSEPICD---MNGRGC 81
            +   R  CD  G  IC  GW  P   CS P+C    MNG  C
Sbjct:  536 KCNSRGQCDVNGGCICRPGWEGP--FCSVPVCSPQCMNGGAC 655
[Close]
BLAST of EMLSAG00000002488 vs. L. salmonis peptides
Match: EMLSAP00000002488 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1484:7889:8243:1 gene:EMLSAG00000002488 transcript:EMLSAT00000002488 description:"maker-LSalAtl2s1484-snap-gene-0.15")

HSP 1 Score: 168.318 bits (425), Expect = 1.791e-55
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 
Query:    1 MIQVKILSIVIFTIFSLPTIKGTGRITPLSRPGATACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPICDMNGRGCV 82
            MIQVKILSIVIFTIFSLPTIKGTGRITPLSRPGATACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPICDMNGRGCV
Sbjct:    1 MIQVKILSIVIFTIFSLPTIKGTGRITPLSRPGATACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPICDMNGRGCV 82
[Close]
BLAST of EMLSAG00000002488 vs. L. salmonis peptides
Match: EMLSAP00000005417 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2921:9665:13131:1 gene:EMLSAG00000005417 transcript:EMLSAT00000005417 description:"maker-LSalAtl2s2921-snap-gene-0.4")

HSP 1 Score: 132.109 bits (331), Expect = 3.809e-37
Identity = 64/75 (85.33%), Postives = 67/75 (89.33%), Query Frame = 0 
Query:    6 ILSIVIFTIFSLPTIKGTGRITPLSRPGATACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPICDMNGRG 80
            I+ I +  +  LP IK TGRITPLSRPGATACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPICDMNGRG
Sbjct:    5 IVWISLVALSILPYIKATGRITPLSRPGATACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPICDMNGRG 79
[Close]
BLAST of EMLSAG00000002488 vs. L. salmonis peptides
Match: EMLSAP00000002328 (pep:novel supercontig:LSalAtl2s:LSalAtl2s143:679982:683460:1 gene:EMLSAG00000002328 transcript:EMLSAT00000002328 description:"augustus_masked-LSalAtl2s143-processed-gene-6.1")

HSP 1 Score: 96.6709 bits (239), Expect = 1.540e-24
Identity = 47/77 (61.04%), Postives = 61/77 (79.22%), Query Frame = 0 
Query:    6 ILSIVIFTIFSLPTIKGTGRITPLSRPGATACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPICDMNGRGCV 82
            + +++I  I   P+ K TGRITPL +  +TAC+AENLRLTDRYICDS GN+ICV GWS P+ LC+ P+CDMNG+GC+
Sbjct:    4 LSTLLIIGILITPS-KSTGRITPLLKVNSTACIAENLRLTDRYICDSYGNIICVGGWSNPTTLCNVPVCDMNGQGCL 79
[Close]
BLAST of EMLSAG00000002488 vs. L. salmonis peptides
Match: EMLSAP00000007552 (pep:novel supercontig:LSalAtl2s:LSalAtl2s436:271825:290086:-1 gene:EMLSAG00000007552 transcript:EMLSAT00000007552 description:"maker-LSalAtl2s436-snap-gene-3.19")

HSP 1 Score: 82.8037 bits (203), Expect = 7.231e-20
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0 
Query:   19 TIKGTGRITPLSRPGATACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPICDMNGRGCV 82
            TI  TGRI PL +    AC+AENLR+T+RYICD  GNVIC+ GW  P+K CS P C++NGR C+
Sbjct:   37 TILATGRIIPLLQINNPACIAENLRVTERYICDLNGNVICIGGWXDPTKFCSVPTCELNGRDCI 100
[Close]
BLAST of EMLSAG00000002488 vs. L. salmonis peptides
Match: EMLSAP00000010049 (pep:novel supercontig:LSalAtl2s:LSalAtl2s662:125535:127843:-1 gene:EMLSAG00000010049 transcript:EMLSAT00000010049 description:"maker-LSalAtl2s662-augustus-gene-1.20")

HSP 1 Score: 55.0694 bits (131), Expect = 2.584e-11
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 0 
Query:    6 ILSIVIFTIFSLPTIKG------TGRI-TPLSRPGATACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPICD 75
            + +I + ++FS  T         +G+I TP+S+  A AC AE L+ T++YIC+  G +IC+ GWS P  LC  P C 
Sbjct:    5 VFTIFLVSLFSSGTSSNRFHQLSSGQIHTPVSK-SAYACSAERLKETEKYICNGRGEIICMRGWSNPDYLCEVPTCS 80
[Close]
BLAST of EMLSAG00000002488 vs. L. salmonis peptides
Match: EMLSAP00000006009 (pep:novel supercontig:LSalAtl2s:LSalAtl2s326:244578:255604:-1 gene:EMLSAG00000006009 transcript:EMLSAT00000006009 description:"snap_masked-LSalAtl2s326-processed-gene-2.8")

HSP 1 Score: 53.1434 bits (126), Expect = 1.443e-10
Identity = 25/76 (32.89%), Postives = 39/76 (51.32%), Query Frame = 0 
Query:    1 MIQVKILSIVIFTIFSLPTIKGTGRITPLSRPGATACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPICDM 76
            ++Q  +LS  +  IF +   +     +P++     AC A N++    YIC   G ++C+ GW   S LCSEPIC  
Sbjct:    9 LVQFLVLSTYMNFIFGM-NFEFRSFESPITSQAQIACQANNIKANGNYICTKFGEIVCLFGWKNESSLCSEPICSQ 83
[Close]
BLAST of EMLSAG00000002488 vs. L. salmonis peptides
Match: EMLSAP00000010397 (pep:novel supercontig:LSalAtl2s:LSalAtl2s68:326217:339785:1 gene:EMLSAG00000010397 transcript:EMLSAT00000010397 description:"maker-LSalAtl2s68-snap-gene-3.35")

HSP 1 Score: 52.373 bits (124), Expect = 2.548e-9
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 0 
Query:   44 LTDRYICDSEGNVICVDGWSYPSKLCSEPICDMNGRGCV 82
            L+++Y CDS GNVIC+ GWS P  LC  P+C + GR CV
Sbjct:   14 LSNKYTCDSIGNVICLPGWSQPEHLCETPVCSIEGRSCV 52
[Close]
BLAST of EMLSAG00000002488 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold439_size171548-snap-gene-0.22 (protein:Tk02654 transcript:maker-scaffold439_size171548-snap-gene-0.22-mRNA-1 annotation:"delta-like protein a")

HSP 1 Score: 58.151 bits (139), Expect = 6.422e-12
Identity = 29/54 (53.70%), Postives = 32/54 (59.26%), Query Frame = 0 
Query:   23 TGRITPLSRPGATACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPICDM 76
            +G  TPL       CLAENLR TD YIC  E  +IC+ GWS PS LC  PIC  
Sbjct:  329 SGMQTPLIH-DDMPCLAENLRETDHYICSDENKMICLSGWSEPSNLCRTPICHF 381
[Close]
BLAST of EMLSAG00000002488 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold645_size120276-snap-gene-0.27 (protein:Tk11116 transcript:maker-scaffold645_size120276-snap-gene-0.27-mRNA-1 annotation:"hypothetical protein DAPPUDRAFT_323318")

HSP 1 Score: 53.1434 bits (126), Expect = 3.714e-10
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 0 
Query:    1 MIQVKILSIVIFTIFSLPTIKGTGRITPLSRPGATACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPICD 75
            MI+  IL +   T+ S  +++G   +T ++    TAC+AENL+  + Y+C   G +IC+ GW+   K C+ PICD
Sbjct:   10 MIKGSILLLGALTLVSQ-SVEGRKPLTLINGWYKTACIAENLKSNNNYMCTRNGTMICLPGWTDEYKYCNTPICD 83
[Close]
BLAST of EMLSAG00000002488 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold2342_size16862-snap-gene-0.3 (protein:Tk12307 transcript:maker-scaffold2342_size16862-snap-gene-0.3-mRNA-1 annotation:"protein jagged-1")

HSP 1 Score: 51.9878 bits (123), Expect = 8.485e-10
Identity = 27/66 (40.91%), Postives = 36/66 (54.55%), Query Frame = 0 
Query:   24 GRITPLSRPGATACLAENLRLTDRYICDSEGNVICVDGWSYPS--------KLCSEPICDMNGRGC 81
            G  TPL +     C+AENL+ + RY+CD + NVIC+ GW+ P           C  P+CD NG  C
Sbjct:   64 GFFTPL-KNDEHPCVAENLKESHRYLCDDDANVICLSGWTEPEDKELHDLRNPCPLPVCDYNGETC 128
[Close]
BLAST of EMLSAG00000002488 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold531_size145796-snap-gene-0.27 (protein:Tk12605 transcript:maker-scaffold531_size145796-snap-gene-0.27-mRNA-1 annotation:"unknown")

HSP 1 Score: 51.2174 bits (121), Expect = 1.360e-9
Identity = 25/58 (43.10%), Postives = 30/58 (51.72%), Query Frame = 0 
Query:   37 CLAENLRLTDRYICDSEGNVICVDGWSYPSKL------------CSEPICDMNGRGCV 82
            C A+NLR T RY C  +G VIC +GW  P               C+EPIC+  GRGC 
Sbjct:   33 CAADNLRETHRYFCSQDGTVICREGWREPQASTLRFGSYYLLGPCAEPICEYQGRGCA 90
[Close]
BLAST of EMLSAG00000002488 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold61_size441589-processed-gene-3.14 (protein:Tk06317 transcript:snap_masked-scaffold61_size441589-processed-gene-3.14-mRNA-1 annotation:"multidrug resistance-associated protein 1-like")

HSP 1 Score: 49.2914 bits (116), Expect = 8.061e-9
Identity = 28/64 (43.75%), Postives = 33/64 (51.56%), Query Frame = 0 
Query:   26 ITPLSRPGATACLAENLRLTDRYICDSEGNVICVDGWSYPSKL--------CSEPICDMNGRGC 81
            +TPL R     C AE+LR + RYICD E NVIC+ GW     +        C  PICD  G  C
Sbjct:  232 LTPL-RIRELPCAAESLRESHRYICDDEANVICLSGWMEEPNVADRDIRNPCPIPICDHQGETC 294
[Close]
BLAST of EMLSAG00000002488 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold275_size226830-snap-gene-1.26 (protein:Tk00636 transcript:maker-scaffold275_size226830-snap-gene-1.26-mRNA-1 annotation:"protein jagged-1")

HSP 1 Score: 48.1358 bits (113), Expect = 2.284e-8
Identity = 29/64 (45.31%), Postives = 33/64 (51.56%), Query Frame = 0 
Query:   26 ITPLSRPGATACLAENLRLTDRYICDSEGNVICVDGWSYP--------SKLCSEPICDMNGRGC 81
            +TPL R     C+AENLR + RYICD E NVIC+ GW              C  PICD  G  C
Sbjct:   25 LTPL-RIEELPCVAENLRESYRYICDDEANVICLSGWMEKPNGDDRDIRNPCPIPICDYQGETC 87
[Close]
BLAST of EMLSAG00000002488 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold411_size179879-snap-gene-0.33 (protein:Tk06323 transcript:maker-scaffold411_size179879-snap-gene-0.33-mRNA-1 annotation:"protein jagged-1-like")

HSP 1 Score: 47.3654 bits (111), Expect = 4.486e-8
Identity = 21/41 (51.22%), Postives = 27/41 (65.85%), Query Frame = 0 
Query:   35 TACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPICD 75
            TAC+AENL+    Y+C   G +IC+ GW+   K CS PICD
Sbjct:   41 TACIAENLKGNRNYMCARNGTMICLPGWTDEYKYCSTPICD 81

HSP 2 Score: 47.3654 bits (111), Expect = 4.486e-8
Identity = 21/41 (51.22%), Postives = 27/41 (65.85%), Query Frame = 0 
Query:   35 TACLAENLRLTDRYICDSEGNVICVDGWSYPSKLCSEPICD 75
            TAC+AENL+    Y+C   G +IC+ GW+   K CS PICD
Sbjct:  188 TACIAENLKGNRNYMCARNGTMICLPGWTDEYKYCSTPICD 228
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002488 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002488 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 9
Match NameE-valueIdentityDescription
gi|592857615|gb|GAXK01099947.1|6.472e-448.78TSA: Calanus finmarchicus comp252426_c0_seq1 trans... [more]
gi|592899750|gb|GAXK01058625.1|9.212e-440.00TSA: Calanus finmarchicus comp588439_c0_seq4 trans... [more]
gi|592899751|gb|GAXK01058624.1|9.427e-440.00TSA: Calanus finmarchicus comp588439_c0_seq3 trans... [more]
gi|592924578|gb|GAXK01033837.1|2.469e-239.02TSA: Calanus finmarchicus comp82103_c6_seq1 transc... [more]
gi|592757915|gb|GAXK01196498.1|3.149e-235.00TSA: Calanus finmarchicus comp577923_c0_seq2 trans... [more]
gi|592757916|gb|GAXK01196497.1|3.838e-235.90TSA: Calanus finmarchicus comp577923_c0_seq1 trans... [more]
gi|592955036|gb|GAXK01003517.1|6.547e-135.56TSA: Calanus finmarchicus comp2155496_c0_seq1 tran... [more]
gi|592840365|gb|GAXK01117179.1|8.874e-140.48TSA: Calanus finmarchicus comp303495_c0_seq1 trans... [more]
gi|592840364|gb|GAXK01117180.1|8.942e-140.48TSA: Calanus finmarchicus comp303495_c0_seq2 trans... [more]
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BLAST of EMLSAG00000002488 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 7
Match NameE-valueIdentityDescription
EMLSAP000000024881.791e-55100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1484:7889... [more]
EMLSAP000000054173.809e-3785.33pep:novel supercontig:LSalAtl2s:LSalAtl2s2921:9665... [more]
EMLSAP000000023281.540e-2461.04pep:novel supercontig:LSalAtl2s:LSalAtl2s143:67998... [more]
EMLSAP000000075527.231e-2059.38pep:novel supercontig:LSalAtl2s:LSalAtl2s436:27182... [more]
EMLSAP000000100492.584e-1138.96pep:novel supercontig:LSalAtl2s:LSalAtl2s662:12553... [more]
EMLSAP000000060091.443e-1032.89pep:novel supercontig:LSalAtl2s:LSalAtl2s326:24457... [more]
EMLSAP000000103972.548e-956.41pep:novel supercontig:LSalAtl2s:LSalAtl2s68:326217... [more]
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BLAST of EMLSAG00000002488 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002488 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002488 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002488 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 7
Match NameE-valueIdentityDescription
maker-scaffold439_size171548-snap-gene-0.226.422e-1253.70protein:Tk02654 transcript:maker-scaffold439_size1... [more]
maker-scaffold645_size120276-snap-gene-0.273.714e-1037.33protein:Tk11116 transcript:maker-scaffold645_size1... [more]
maker-scaffold2342_size16862-snap-gene-0.38.485e-1040.91protein:Tk12307 transcript:maker-scaffold2342_size... [more]
maker-scaffold531_size145796-snap-gene-0.271.360e-943.10protein:Tk12605 transcript:maker-scaffold531_size1... [more]
snap_masked-scaffold61_size441589-processed-gene-3.148.061e-943.75protein:Tk06317 transcript:snap_masked-scaffold61_... [more]
maker-scaffold275_size226830-snap-gene-1.262.284e-845.31protein:Tk00636 transcript:maker-scaffold275_size2... [more]
maker-scaffold411_size179879-snap-gene-0.334.486e-851.22protein:Tk06323 transcript:maker-scaffold411_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1484supercontigLSalAtl2s1484:7889..8243 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1484-snap-gene-0.15
NoteHypothetical protein
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002488 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002488EMLSAT00000002488-698335Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1484:7889..8243+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002488-685254 ID=EMLSAG00000002488-685254|Name=EMLSAG00000002488|organism=Lepeophtheirus salmonis|type=gene|length=355bp|location=Sequence derived from alignment at LSalAtl2s1484:7889..8243+ (Lepeophtheirus salmonis)
ATTTGAATAATCAGAATACAGTTCTTCAAGACTGTTTCAAGATGATTCAA
GTGAAAATTCTTTCAATTGTAATTTTTACAATCTTTAGTCTTCCAACAAT
CAAAGGAACAGGAAGAATTACACCCTTGAGTCGTCCTGGAGCAACAGCAT
GCCTAGCAGAAAACCTAAGAGTAAGAAATCGATAGATATGTTCATGTATA
TAATTTTAATAAAATATTAATAAATCATTGTTTAAAAGTTGACGGATCGA
TACATTTGTGATTCGGAAGGAAATGTCATCTGTGTTGATGGATGGTCCTA
TCCATCCAAACTCTGTAGTGAGCCTATTTGTGATATGAATGGAAGAGGAT
GTGTG
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