EMLSAG00000002813, EMLSAG00000002813-685579 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000002813 vs. C. finmarchicus
Match: gi|592934065|gb|GAXK01024488.1| (TSA: Calanus finmarchicus comp684593_c0_seq7 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 1.514e+0 Identity = 22/83 (26.51%), Postives = 37/83 (44.58%), Query Frame = 0 Query: 10 GKKIYNPLKRYKLKFDAVPTVFPDIPKNLRKQTFPESITTLSTYTKRFEQDKLRLNSQIERLSQEDEIKNLTDIKKTLGKPCL 92 GK++ R K+K D + +V +I LR+Q FP+ L + ++ ED+ ++T+ T GK CL Sbjct: 113 GKRLNTLENRVKVKGDIIGSVCLEITGELRQQVFPDFFHLLVAVLIKDG*EQ-----------HEDDDSDITEDGATAGKECL 328
BLAST of EMLSAG00000002813 vs. C. finmarchicus
Match: gi|592897296|gb|GAXK01061079.1| (TSA: Calanus finmarchicus comp3031806_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 2.389e+0 Identity = 16/40 (40.00%), Postives = 24/40 (60.00%), Query Frame = 0 Query: 1 MKERMQIQLGKKIYNPLKRYKLKFDAVPTVFPDIPKNLRK 40 + + QI L K +YNPLK KL VP ++ +IP++ K Sbjct: 470 LHQSCQISLSKPVYNPLKLIKL----VPNIWLNIPESCHK 577
BLAST of EMLSAG00000002813 vs. L. salmonis peptides
Match: EMLSAP00000002813 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1623:25369:26680:-1 gene:EMLSAG00000002813 transcript:EMLSAT00000002813 description:"snap-LSalAtl2s1623-processed-gene-0.12") HSP 1 Score: 677.937 bits (1748), Expect = 0.000e+0 Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0 Query: 1 MKERMQIQLGKKIYNPLKRYKLKFDAVPTVFPDIPKNLRKQTFPESITTLSTYTKRFEQDKLRLNSQIERLSQEDEIKNLTDIKKTLGKPCLPKGINVIYNEDFVIFFALSSQDLVPYILLGLKVNNDIFLNFFKGTSYTYCRKITQTSFKHKVCLEILEEAAHHQDFNSINPICFIIEQLHLHFVSVKGRGYSPKVKLLDEQDKYVSIIIDKVYSSQRVEFSDSHFFGCDRNGNYSKTILCFMVKSVLGKYGDMVAMVPITNIKSSIIKQYYMNVLEVVIKVGLEPVATITDTHASNRKLYVDKIENGIFPEKCNADLSVKFFPRVRSND 331 MKERMQIQLGKKIYNPLKRYKLKFDAVPTVFPDIPKNLRKQTFPESITTLSTYTKRFEQDKLRLNSQIERLSQEDEIKNLTDIKKTLGKPCLPKGINVIYNEDFVIFFALSSQDLVPYILLGLKVNNDIFLNFFKGTSYTYCRKITQTSFKHKVCLEILEEAAHHQDFNSINPICFIIEQLHLHFVSVKGRGYSPKVKLLDEQDKYVSIIIDKVYSSQRVEFSDSHFFGCDRNGNYSKTILCFMVKSVLGKYGDMVAMVPITNIKSSIIKQYYMNVLEVVIKVGLEPVATITDTHASNRKLYVDKIENGIFPEKCNADLSVKFFPRVRSND Sbjct: 1 MKERMQIQLGKKIYNPLKRYKLKFDAVPTVFPDIPKNLRKQTFPESITTLSTYTKRFEQDKLRLNSQIERLSQEDEIKNLTDIKKTLGKPCLPKGINVIYNEDFVIFFALSSQDLVPYILLGLKVNNDIFLNFFKGTSYTYCRKITQTSFKHKVCLEILEEAAHHQDFNSINPICFIIEQLHLHFVSVKGRGYSPKVKLLDEQDKYVSIIIDKVYSSQRVEFSDSHFFGCDRNGNYSKTILCFMVKSVLGKYGDMVAMVPITNIKSSIIKQYYMNVLEVVIKVGLEPVATITDTHASNRKLYVDKIENGIFPEKCNADLSVKFFPRVRSND 331
BLAST of EMLSAG00000002813 vs. L. salmonis peptides
Match: EMLSAP00000012741 (pep:novel supercontig:LSalAtl2s:LSalAtl2s967:28852:32667:-1 gene:EMLSAG00000012741 transcript:EMLSAT00000012741 description:"snap-LSalAtl2s967-processed-gene-0.100") HSP 1 Score: 128.257 bits (321), Expect = 2.313e-34 Identity = 84/203 (41.38%), Postives = 114/203 (56.16%), Query Frame = 0 Query: 24 FDAVPTVFPDIPKNLRKQTFPESITTLSTYTKR--FEQDKLRLNSQIERLSQEDEIKNLTDIKKTLGKPCLPKGINVIYNEDFVIFFALSSQDLVPYILLGLKVNNDIFLNFF-KG-----------------TSYTYCRKI----------TQTSFKHKVCLEILEEAAHHQDFNSINPICFIIEQLHLHFVSVKGRGYSPK 196 FD D + L+K T E K+ +Q+ LR +SQ+E+LS+ED+I+NLTDIKK L K LPKGIN NED++I LS+QDLVP IL GLKVN+D+ + F KG + ++ KI ++ + K +E+LEE+ + QDF S N + F+IEQLHLH VS KGR YSP+ Sbjct: 37 FDKKINHLGDDERLLKKDTHKEREGEKEGKMKKSTLKQEILRHDSQMEQLSKEDKIENLTDIKKKLSKSNLPKGINENSNEDYIILSELSTQDLVPTILYGLKVNSDLTYSIFSKGLPLPIIEIKHICSSKHLSRFSDVNKILSYLKNRSDESKQASNIKYAIELLEESLYQQDFYSQNHLGFLIEQLHLHSVSAKGRRYSPE 239
BLAST of EMLSAG00000002813 vs. L. salmonis peptides
Match: EMLSAP00000001188 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1197:88914:90666:-1 gene:EMLSAG00000001188 transcript:EMLSAT00000001188 description:"snap-LSalAtl2s1197-processed-gene-0.49") HSP 1 Score: 93.5893 bits (231), Expect = 1.424e-22 Identity = 52/122 (42.62%), Postives = 73/122 (59.84%), Query Frame = 0 Query: 17 LKRYKLKFDAVPTVFPDIPKNLRKQTFPESITTLSTYTKRFEQDKLRLNSQIERLSQEDEIKNLTDIKKTLGKPCLPKGINVIYNEDFVIFFALSSQDLVPYILLGLKVNND----IFLNFF 134 ++R LK D +PT+ D P Q PE T L++ T RFE+D RLN++I + +ED I + +IK+ C P+GI+ I NE++ I+FALS +DL IL G KV+ND IF N F Sbjct: 94 IQRRSLKADTIPTILHDFPG---FQKVPEIPTNLASSTNRFERDNSRLNNRIRQSLKEDVITKMKNIKEKRDCSCFPEGIHEISNEEYTIYFALSKEDLSSTILYGWKVDNDFSYSIFANSF 212
BLAST of EMLSAG00000002813 vs. L. salmonis peptides
Match: EMLSAP00000008076 (pep:novel supercontig:LSalAtl2s:LSalAtl2s47:287231:290661:-1 gene:EMLSAG00000008076 transcript:EMLSAT00000008076 description:"augustus-LSalAtl2s47-processed-gene-3.11") HSP 1 Score: 85.1149 bits (209), Expect = 2.160e-18 Identity = 42/114 (36.84%), Postives = 71/114 (62.28%), Query Frame = 0 Query: 196 KVKLLDEQDKYVSIIIDKVYSSQRVEFSDSHFFGCDRNGNYSKTILCFMVKSVLGKYGDMVAMVPITNIKSSIIKQYYMNVLEVVIKVGLEPVATITDTHASNRKLYVDKIENG 309 +++LL + + +I D+VYSSQR+EF +G + + TILCFM++SV Y D+VAMVP+ + S IIK + M ++++ K+G + V + D +ASN + Y ++ +G Sbjct: 344 RLELLPPEHRKGILIFDEVYSSQRIEFISGKLYGSE---TPTGTILCFMIRSVTYNYNDVVAMVPVFTLNSKIIKNWTMEAIKMITKLGFDVVGLVCDGYASNIEFYNKELCHG 454
BLAST of EMLSAG00000002813 vs. L. salmonis peptides
Match: EMLSAP00000007390 (pep:novel supercontig:LSalAtl2s:LSalAtl2s41:643434:645644:-1 gene:EMLSAG00000007390 transcript:EMLSAT00000007390 description:"snap-LSalAtl2s41-processed-gene-6.42") HSP 1 Score: 76.6406 bits (187), Expect = 1.054e-15 Identity = 87/364 (23.90%), Postives = 154/364 (42.31%), Query Frame = 0 Query: 22 LKFDAVPTVFPDIPKNLRKQTFPESI--TTLSTYTKRFEQDKLRLNSQIERLSQEDEIKNLTDIKKTLGKPCLPKGI--------------NVIYNED---FVIFFALSSQDL---------VPYILLGLKVNN------DIFLNFFK-----GTSYTYCRKITQTSFKHKV--CLEILEEAAHHQDFNSINPICFIIEQLHLHFVSVKGRGYSPKVKLLDE-----------------------------------------QDKYVSIIIDKVYSSQRVEFSDSHFFGCDRNGNYSKTILCFMVKSVLGKYGDMVAMVPITNIKSSIIKQ-YYMNVLEVVIKVGLEPVATITDTHASNRKLY 302 L DA+PT FP++P K P I + S + R ++K + ++I D I +++++ L + LP GI N+ +++ FV F A + DL + + +L ++N DI LN TS T+T+ + ++ ++ L+ H D + + F+ EQL L + R Y+ V+LL E Q+K +SI+ D+ Y + V++ FFG + SKTI C ++KS+ + + +A+ PI+ + + I+K+ + V +VV ++G + ATI D H N+K+Y Sbjct: 59 LSKDAIPTQFPNMPSYFSK---PAKIVRSKASLXSTRILKEKENIMNKIHACEMADTISSISELNLKLDRARLPDGIYERFDSIDQALIFHNLQFSDSHGFFVGFCAKVNLDLSIRMYRNKELSFQILNQIIDNNHINKCDILLNILAYLNSLSTSDFVSENSTETNVEDEIESVIKRLQCLNPHLDEHQEKKLSFLTEQLSLLIKAPSQRRYTTLVELLKEVLTLPTIRRLSELSTSLNLETGLSNTTVKYLKTRLDSFENHQEKSISIVFDETYCTGGVDYFSGSFFGLREGEHISKTIFCVLIKSLHSTHNE-IAIHPISKLNAEIVKKNVFDQVAQVVSQIGFKVRATICDAHTINQKMY 418
BLAST of EMLSAG00000002813 vs. L. salmonis peptides
Match: EMLSAP00000005372 (pep:novel supercontig:LSalAtl2s:LSalAtl2s28:136065:140303:1 gene:EMLSAG00000005372 transcript:EMLSAT00000005372 description:"maker-LSalAtl2s28-snap-gene-1.60") HSP 1 Score: 63.929 bits (154), Expect = 2.122e-11 Identity = 36/110 (32.73%), Postives = 59/110 (53.64%), Query Frame = 0 Query: 200 LDEQDKYVSIIIDKVYSSQRVEFSDSHFFGCDRNGNYSKTILCFMVKSVLGKYGDMVAMVPITNIKSSIIKQYYMNVLEVVIKVGLEPVATITDTHASNRKLYVDKIENG 309 L + +K ++I+ D+ Y ++ EFS G N N K+ M+KS+ G Y D+V ++IK+ I YM L+ + +G VA I+D ++S+ + DKI NG Sbjct: 425 LTDVEKVIAIVFDEFYVVRKFEFSRGRLQG-KNNENIPKSSFSLMIKSIAGSYRDIVYTSSKSSIKAQTIYDVYMAALKALTDIGFRVVAVISDGNSSHIHFFKDKIFNG 533
BLAST of EMLSAG00000002813 vs. L. salmonis peptides
Match: EMLSAP00000009597 (pep:novel supercontig:LSalAtl2s:LSalAtl2s617:147807:148969:-1 gene:EMLSAG00000009597 transcript:EMLSAT00000009597 description:"maker-LSalAtl2s617-augustus-gene-1.41") HSP 1 Score: 55.8398 bits (133), Expect = 5.289e-9 Identity = 48/165 (29.09%), Postives = 83/165 (50.30%), Query Frame = 0 Query: 21 KLKFDAVPTVFPDIPKNLRKQTFPESITTLSTYTKRFEQDKLRLNSQIERLSQEDEIKNLTDIKKTLGKPCLPKGINVIYNED--FVIFFALS---SQDLVPYILLGLKVNNDIFLNFFKGTSYTYCR---KITQTSFKHKVCLEILEEAAHHQDFNSINPICFI 177 KLK +VP+ FP++PK + T S + +T + R ++ RLN+Q + Q++ I++L D++K LGK LP +++I E ++I +S +Q+L L++N D+ S+T C K+ + F H IL+ F IN + F+ Sbjct: 93 KLKQGSVPSKFPNLPKETKMLT--PSRSERATSSARHQRQLERLNTQAKEFYQKNNIQSLDDLEKKLGKATLPSQVSMIKQEGKLYLITIGMSKFGTQELS----FSLEINEDL--------SFTACVNGFKLKKNRFGH-----ILKTNTFEHLFEVINLVAFL 238
BLAST of EMLSAG00000002813 vs. L. salmonis peptides
Match: EMLSAP00000004011 (pep:novel supercontig:LSalAtl2s:LSalAtl2s214:83119:84574:1 gene:EMLSAG00000004011 transcript:EMLSAT00000004011 description:"snap_masked-LSalAtl2s214-processed-gene-1.9") HSP 1 Score: 51.6026 bits (122), Expect = 9.987e-8 Identity = 50/203 (24.63%), Postives = 91/203 (44.83%), Query Frame = 0 Query: 18 KRYKLKFDAVPTVFPDIPKNLRKQTFPESITTLSTYTKRFEQDKLRLNSQIERLSQEDEIKNLTDIKKTLGKPCLPKGINVIYNEDFVIFFALSSQDLVPYILLGLKVNNDIFLNFFKGTSYT-------YCR--KITQTS--------FKHKVC---------LEILEEAAHHQDFNSINPICFIIEQLHLHFVSVKGRGYS 194 KR LK DA+P+VF IPK+ K+ P+ + ++ + R + + + ++ D + ++ ++ + + +P GI+ I + ++F + ++ I LKV ++ + + T C+ KIT TS K C +E+LE Q + + + FIIEQL L F ++K R YS Sbjct: 82 KRSILKADAIPSVFTGIPKSCLKR-IPKPRSNNASSSARLNKQRKKSMEDYQKFLDSDRVDSIRELLEKFDRRNIPSGIDEISRNNEMMFLSFDWEN--QEIRFSLKVQENLKIQLYHQTMQIPLSDVRHICKESKITATSQVGSLLSYLKSLTCSKKLIINKAVELLESVVLDQ-VSEVRHVDFIIEQLKLAFTTLKQRRYS 280
BLAST of EMLSAG00000002813 vs. nr
Match: gi|1101366669|ref|XP_018914579.1| (PREDICTED: uncharacterized protein LOC109042346 [Bemisia tabaci]) HSP 1 Score: 65.855 bits (159), Expect = 3.516e-8 Identity = 34/113 (30.09%), Postives = 65/113 (57.52%), Query Frame = 0 Query: 196 KVKLLDEQDKYVSIIIDKVYSSQRVEFSDSHFFGCDRNGN------YSKTILCFMVKSVLGKYGDMVAMVPITNIKSSIIKQYYMNVLEVVIKVGLEPVATITDTHASNRKLY 302 K KLL E+DK V++ +D++Y++ ++ + FG +G+ + TI FM S+ K D++A+ P+ N+ I+ Q VL+++++VG + I+D + NRK++ Sbjct: 351 KFKLLAEEDKTVNLQLDEIYTNSKLVYKGGKVFGIAEHGSGTSSDLTAGTIQAFMSSSLQSKNKDVIALFPVRNLDGEILLQLTKAVLKLMVEVGFFVLCAISDNNQVNRKMF 463
BLAST of EMLSAG00000002813 vs. nr
Match: gi|1101401440|ref|XP_018911837.1| (PREDICTED: uncharacterized protein LOC109040369 [Bemisia tabaci]) HSP 1 Score: 61.6178 bits (148), Expect = 8.878e-7 Identity = 34/122 (27.87%), Postives = 69/122 (56.56%), Query Frame = 0 Query: 196 KVKLLDEQDKYVSIIIDKVYSSQRVEFSDSHFFGCDRNGN------YSKTILCFMVKSVLGKYGDMVAMVPITNIKSSIIKQYYMNVLEVVIKVGLEPVATITDTHASNRKLYVDKIENGIF 311 K KLL E+DK V++ +D++Y++ ++ + +G +G + TI FM S+ K D+VA+ P+ N+ + I+ + VL+++++VG + I D + N+K++ D + +G+ Sbjct: 350 KFKLLSEEDKVVNLQLDEIYTNSKLVYKAGKVYGIAEHGANTSSDLTAGTIQAFMSSSLQSKNKDVVALFPVRNLDAEILLKLIRAVLKLMVEVGFFVLCAIADNNQVNKKMF-DLLCDGVM 470
BLAST of EMLSAG00000002813 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold427_size174323-snap-gene-0.44 (protein:Tk04512 transcript:maker-scaffold427_size174323-snap-gene-0.44-mRNA-1 annotation:"hypothetical protein BRAFLDRAFT_126511") HSP 1 Score: 50.8322 bits (120), Expect = 2.656e-7 Identity = 25/72 (34.72%), Postives = 46/72 (63.89%), Query Frame = 0 Query: 240 ILCFMVKSVLGK-YGDMVAMVPITNIKSSIIKQYYMNVLEVVIKVGLEPVATITDTHASNRKLYVDKIENGI 310 +L FM+KSV GK Y +MVA+ ++N+ I+ Q Y+ V++ + VG + A D H +N+K + +++ +G+ Sbjct: 1 MLGFMLKSVGGKKYMNMVALCEVSNLNDQILHQEYLKVVKAIDSVGFDLGAISVDNHTTNQKFFKEELCHGL 72 The following BLAST results are available for this feature:
BLAST of EMLSAG00000002813 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000002813 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 2
BLAST of EMLSAG00000002813 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 8
BLAST of EMLSAG00000002813 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000002813 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000002813 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 2
BLAST of EMLSAG00000002813 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1623:25369..26680- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000002813-685579 ID=EMLSAG00000002813-685579|Name=EMLSAG00000002813|organism=Lepeophtheirus salmonis|type=gene|length=1312bp|location=Sequence derived from alignment at LSalAtl2s1623:25369..26680- (Lepeophtheirus salmonis)back to top Add to Basket
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