EMLSAG00000004472, EMLSAG00000004472-687238 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000004472 vs. GO
Match: - (symbol:trap-2 species:6239 "Caenorhabditis elegans" [GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP] InterPro:IPR008856 Pfam:PF05753 PIRSF:PIRSF016400 GO:GO:0016021 GO:GO:0005789 EMBL:FO080299 eggNOG:NOG292722 HOGENOM:HOG000007980 KO:K13250 PANTHER:PTHR12861 PIR:G89450 RefSeq:NP_508150.1 UniGene:Cel.7032 STRING:6239.T04G9.5.1 PaxDb:Q22169 EnsemblMetazoa:T04G9.5.1 EnsemblMetazoa:T04G9.5.2 GeneID:180422 KEGG:cel:CELE_T04G9.5 UCSC:T04G9.5.1 CTD:180422 WormBase:T04G9.5 GeneTree:ENSGT00390000005125 InParanoid:Q22169 OMA:VVIGFTS OrthoDB:EOG7X0VK4 NextBio:909304 PRO:PR:Q22169 Uniprot:Q22169) HSP 1 Score: 48.9062 bits (115), Expect = 2.261e-7 Identity = 22/68 (32.35%), Postives = 43/68 (63.24%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKEICS-PEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 +++YG+YN+G++PA + + S P +S+D G + IP S TH+++++ + FGFF++T+ Sbjct: 45 VLEYGLYNVGDKPAQKVTIDDRHSFPTNSFDIVKGLLFVHFEQIPAGSNVTHSVVIRPRAFGFFNYTA 112
BLAST of EMLSAG00000004472 vs. GO
Match: - (symbol:trap-2 "Translocon-associated protein subunit beta" species:6239 "Caenorhabditis elegans" [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0005789 "endoplasmic reticulum membrane" evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] InterPro:IPR008856 Pfam:PF05753 PIRSF:PIRSF016400 GO:GO:0016021 GO:GO:0005789 EMBL:FO080299 eggNOG:NOG292722 HOGENOM:HOG000007980 KO:K13250 PANTHER:PTHR12861 PIR:G89450 RefSeq:NP_508150.1 UniGene:Cel.7032 STRING:6239.T04G9.5.1 PaxDb:Q22169 EnsemblMetazoa:T04G9.5.1 EnsemblMetazoa:T04G9.5.2 GeneID:180422 KEGG:cel:CELE_T04G9.5 UCSC:T04G9.5.1 CTD:180422 WormBase:T04G9.5 GeneTree:ENSGT00390000005125 InParanoid:Q22169 OMA:VVIGFTS OrthoDB:EOG7X0VK4 NextBio:909304 PRO:PR:Q22169 Uniprot:Q22169) HSP 1 Score: 48.9062 bits (115), Expect = 2.261e-7 Identity = 22/68 (32.35%), Postives = 43/68 (63.24%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKEICS-PEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 +++YG+YN+G++PA + + S P +S+D G + IP S TH+++++ + FGFF++T+ Sbjct: 45 VLEYGLYNVGDKPAQKVTIDDRHSFPTNSFDIVKGLLFVHFEQIPAGSNVTHSVVIRPRAFGFFNYTA 112
BLAST of EMLSAG00000004472 vs. GO
Match: - (symbol:SSR2 "Translocon-associated protein subunit beta" species:9606 "Homo sapiens" [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] InterPro:IPR008856 Pfam:PF05753 GO:GO:0005783 GO:GO:0016021 EMBL:AL355388 PANTHER:PTHR12861 HGNC:HGNC:11324 ChiTaRS:SSR2 ProteinModelPortal:E9PJ35 Ensembl:ENST00000466905 Ensembl:ENST00000474377 NextBio:35502464 ArrayExpress:E9PJ35 Uniprot:E9PJ35) HSP 1 Score: 45.8246 bits (107), Expect = 1.604e-6 Identity = 21/66 (31.82%), Postives = 38/66 (57.58%), Query Frame = 0 Query: 2 VKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 ++Y IYN+G A+D ++ + P + + SG + I P S +HT++++ K G+F+FTS Sbjct: 42 LQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTS 107
BLAST of EMLSAG00000004472 vs. GO
Match: - (symbol:SSR2 "Translocon-associated protein subunit beta" species:9606 "Homo sapiens" [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] InterPro:IPR008856 Pfam:PF05753 GO:GO:0005783 GO:GO:0016021 EMBL:AL355388 PANTHER:PTHR12861 HGNC:HGNC:11324 ChiTaRS:SSR2 ProteinModelPortal:E9PQI4 Ensembl:ENST00000531917 NextBio:35504406 ArrayExpress:E9PQI4 Bgee:E9PQI4 Uniprot:E9PQI4) HSP 1 Score: 45.8246 bits (107), Expect = 1.738e-6 Identity = 21/66 (31.82%), Postives = 38/66 (57.58%), Query Frame = 0 Query: 2 VKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 ++Y IYN+G A+D ++ + P + + SG + I P S +HT++++ K G+F+FTS Sbjct: 42 LQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTS 107
BLAST of EMLSAG00000004472 vs. GO
Match: - (symbol:SSR2 "Translocon-associated protein subunit beta" species:9606 "Homo sapiens" [GO:0005783 "endoplasmic reticulum" evidence=TAS] [GO:0005789 "endoplasmic reticulum membrane" evidence=IEA] [GO:0006412 "translation" evidence=TAS] [GO:0006613 "cotranslational protein targeting to membrane" evidence=TAS] [GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0044267 "cellular protein metabolic process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_17015 InterPro:IPR008856 Pfam:PF05753 PIRSF:PIRSF016400 GO:GO:0005783 GO:GO:0016021 GO:GO:0005789 GO:GO:0006412 EMBL:CH471121 EMBL:AL355388 GO:GO:0006614 CTD:6746 eggNOG:NOG292722 HOVERGEN:HBG000858 KO:K13250 PANTHER:PTHR12861 OMA:VVIGFTS OrthoDB:EOG7X0VK4 EMBL:X74104 EMBL:D37991 EMBL:AY251536 EMBL:CR456973 EMBL:AK222600 EMBL:AK313821 EMBL:BC000341 PIR:S41063 RefSeq:NP_003136.1 RefSeq:XP_005245523.1 UniGene:Hs.74564 ProteinModelPortal:P43308 BioGrid:112624 DIP:DIP-60652N IntAct:P43308 STRING:9606.ENSP00000295702 PhosphoSite:P43308 DMDM:1174451 PaxDb:P43308 PRIDE:P43308 Ensembl:ENST00000295702 Ensembl:ENST00000480567 GeneID:6746 KEGG:hsa:6746 UCSC:uc001fmx.3 GeneCards:GC01M155983 HGNC:HGNC:11324 HPA:HPA037787 MIM:600867 neXtProt:NX_P43308 PharmGKB:PA36148 InParanoid:P43308 PhylomeDB:P43308 TreeFam:TF314461 ChiTaRS:SSR2 GeneWiki:SSR2 GenomeRNAi:6746 NextBio:26314 PRO:PR:P43308 ArrayExpress:P43308 Bgee:P43308 CleanEx:HS_SSR2 Genevestigator:P43308 Uniprot:P43308) HSP 1 Score: 46.2098 bits (108), Expect = 2.307e-6 Identity = 21/66 (31.82%), Postives = 38/66 (57.58%), Query Frame = 0 Query: 2 VKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 ++Y IYN+G A+D ++ + P + + SG + I P S +HT++++ K G+F+FTS Sbjct: 42 LQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTS 107
BLAST of EMLSAG00000004472 vs. GO
Match: - (symbol:SSR2 "Translocon-associated protein subunit beta" species:9615 "Canis lupus familiaris" [GO:0005789 "endoplasmic reticulum membrane" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] InterPro:IPR008856 Pfam:PF05753 PIRSF:PIRSF016400 GO:GO:0016021 GO:GO:0005789 CTD:6746 eggNOG:NOG292722 HOGENOM:HOG000007980 HOVERGEN:HBG000858 KO:K13250 PANTHER:PTHR12861 EMBL:X53529 EMBL:X53591 PIR:A36679 RefSeq:NP_001003269.1 UniGene:Cfa.2734 STRING:9615.ENSCAFP00000024839 GeneID:403950 KEGG:cfa:403950 InParanoid:P23438 NextBio:20817440 Uniprot:P23438) HSP 1 Score: 46.2098 bits (108), Expect = 2.355e-6 Identity = 21/66 (31.82%), Postives = 38/66 (57.58%), Query Frame = 0 Query: 2 VKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 ++Y IYN+G A+D ++ + P + + SG + I P S +HT++++ K G+F+FTS Sbjct: 42 LQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTS 107
BLAST of EMLSAG00000004472 vs. GO
Match: - (symbol:SSR2 "Translocon-associated protein subunit beta" species:9913 "Bos taurus" [GO:0005789 "endoplasmic reticulum membrane" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] InterPro:IPR008856 Pfam:PF05753 PIRSF:PIRSF016400 GO:GO:0016021 GO:GO:0005789 EMBL:BT020976 EMBL:BC102097 RefSeq:NP_001015533.1 UniGene:Bt.49010 GeneID:506530 KEGG:bta:506530 CTD:6746 eggNOG:NOG292722 HOGENOM:HOG000007980 HOVERGEN:HBG000858 KO:K13250 NextBio:20867643 PANTHER:PTHR12861 Uniprot:Q5E9E4) HSP 1 Score: 46.2098 bits (108), Expect = 2.532e-6 Identity = 21/66 (31.82%), Postives = 38/66 (57.58%), Query Frame = 0 Query: 2 VKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 ++Y IYN+G A+D ++ + P + + SG + I P S +HT++++ K G+F+FTS Sbjct: 42 LQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTS 107
BLAST of EMLSAG00000004472 vs. GO
Match: - (symbol:SSR2 "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] InterPro:IPR008856 Pfam:PF05753 PIRSF:PIRSF016400 GO:GO:0005783 GO:GO:0016021 CTD:6746 HOVERGEN:HBG000858 KO:K13250 PANTHER:PTHR12861 GeneTree:ENSGT00390000005125 OMA:VVIGFTS OrthoDB:EOG7X0VK4 TreeFam:TF314461 EMBL:AC172369 EMBL:AADN03008364 EMBL:AJ719615 RefSeq:NP_001006561.1 UniGene:Gga.7437 Ensembl:ENSGALT00000001109 GeneID:425656 KEGG:gga:425656 InParanoid:Q5ZLW9 NextBio:20827586 PRO:PR:Q5ZLW9 Uniprot:Q5ZLW9) HSP 1 Score: 46.2098 bits (108), Expect = 2.532e-6 Identity = 21/66 (31.82%), Postives = 38/66 (57.58%), Query Frame = 0 Query: 2 VKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 ++Y IYN+G A+D ++ + P + + SG + I P S +HT++++ K G+F+FTS Sbjct: 42 LQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTS 107
BLAST of EMLSAG00000004472 vs. GO
Match: - (symbol:Ssr2 "signal sequence receptor, beta" species:10090 "Mus musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575 "cellular_component" evidence=ND] [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0008150 "biological_process" evidence=ND] [GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] InterPro:IPR008856 Pfam:PF05753 PIRSF:PIRSF016400 MGI:MGI:1913506 GO:GO:0016021 GO:GO:0005789 CTD:6746 eggNOG:NOG292722 HOGENOM:HOG000007980 HOVERGEN:HBG000858 KO:K13250 PANTHER:PTHR12861 GeneTree:ENSGT00390000005125 OMA:VVIGFTS OrthoDB:EOG7X0VK4 TreeFam:TF314461 EMBL:AK005340 EMBL:AK007538 EMBL:AK007720 EMBL:AK010565 EMBL:AK020145 EMBL:AK050505 EMBL:AK084530 EMBL:BC010214 RefSeq:NP_079724.1 RefSeq:XP_006501941.1 UniGene:Mm.7091 ProteinModelPortal:Q9CPW5 PhosphoSite:Q9CPW5 PaxDb:Q9CPW5 PRIDE:Q9CPW5 Ensembl:ENSMUST00000035785 GeneID:66256 KEGG:mmu:66256 UCSC:uc008pvs.1 InParanoid:Q9CPW5 NextBio:321109 PRO:PR:Q9CPW5 Bgee:Q9CPW5 CleanEx:MM_SSR2 Genevestigator:Q9CPW5 Uniprot:Q9CPW5) HSP 1 Score: 45.8246 bits (107), Expect = 2.927e-6 Identity = 21/66 (31.82%), Postives = 38/66 (57.58%), Query Frame = 0 Query: 2 VKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 ++Y IYN+G A+D ++ + P + + SG + I P S +HT++++ K G+F+FTS Sbjct: 42 LQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTS 107
BLAST of EMLSAG00000004472 vs. GO
Match: - (symbol:Ssr2 "signal sequence receptor, beta" species:10116 "Rattus norvegicus" [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] InterPro:IPR008856 Pfam:PF05753 PIRSF:PIRSF016400 RGD:1308365 GO:GO:0005783 GO:GO:0016021 EMBL:CH473976 CTD:6746 eggNOG:NOG292722 HOGENOM:HOG000007980 HOVERGEN:HBG000858 KO:K13250 PANTHER:PTHR12861 GeneTree:ENSGT00390000005125 OMA:VVIGFTS OrthoDB:EOG7X0VK4 TreeFam:TF314461 EMBL:AABR06018769 EMBL:BC168754 RefSeq:NP_001099912.1 UniGene:Rn.17458 STRING:10116.ENSRNOP00000027123 Ensembl:ENSRNOT00000027123 GeneID:295235 KEGG:rno:295235 UCSC:RGD:1308365 NextBio:639162 PRO:PR:B5DEQ0 Genevestigator:B5DEQ0 Uniprot:B5DEQ0) HSP 1 Score: 45.8246 bits (107), Expect = 2.988e-6 Identity = 21/66 (31.82%), Postives = 38/66 (57.58%), Query Frame = 0 Query: 2 VKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 ++Y IYN+G A+D ++ + P + + SG + I P S +HT++++ K G+F+FTS Sbjct: 42 LQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTS 107
BLAST of EMLSAG00000004472 vs. C. finmarchicus
Match: gi|592758943|gb|GAXK01195470.1| (TSA: Calanus finmarchicus comp8935159_c0_seq1 transcribed RNA sequence) HSP 1 Score: 56.225 bits (134), Expect = 2.109e-10 Identity = 23/67 (34.33%), Postives = 41/67 (61.19%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 ++KY ++NIG A+D QV + D ++ G F++ IPP + TH ++++ KFG+F+FT+ Sbjct: 176 LIKYSLFNIGGSSALDVQVSDSTFSPDDFEVVGGQMKFSVDRIPPGADATHVVVLRPTKFGYFNFTA 376
BLAST of EMLSAG00000004472 vs. C. finmarchicus
Match: gi|592778023|gb|GAXK01176545.1| (TSA: Calanus finmarchicus comp3365_c2_seq1 transcribed RNA sequence) HSP 1 Score: 56.9954 bits (136), Expect = 2.615e-10 Identity = 26/73 (35.62%), Postives = 48/73 (65.75%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFT-SKVYFN 72 +VKY ++N+G+ A + +V + + +D SG T + L + P S ++HT++V+ KKFG+F+FT ++V +N Sbjct: 478 VVKYNLFNVGDTAATNVKVVDNGFRVEDFDVVSGQTKYKLERVAPGSNSSHTIVVRPKKFGYFNFTAAEVTYN 696
BLAST of EMLSAG00000004472 vs. C. finmarchicus
Match: gi|592824142|gb|GAXK01130426.1| (TSA: Calanus finmarchicus comp70270_c8_seq2 transcribed RNA sequence) HSP 1 Score: 28.4906 bits (62), Expect = 1.568e+0 Identity = 15/47 (31.91%), Postives = 23/47 (48.94%), Query Frame = 0 Query: 12 QPAVDAQVKEICSPEDSYDAASGNTSFN-----LYHIPPYSYNTHTL 53 +P++ VKE CSP D Y AS S + +P +++ H L Sbjct: 265 RPSIAEPVKETCSPGDKYRDASNRESNQGNNEKVSAVPTSTWHRHKL 405
BLAST of EMLSAG00000004472 vs. C. finmarchicus
Match: gi|592860843|gb|GAXK01096719.1| (TSA: Calanus finmarchicus comp54921_c1_seq1 transcribed RNA sequence) HSP 1 Score: 27.335 bits (59), Expect = 5.199e+0 Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 0 Query: 40 LYHIPPY--SYNTHTL 53 LYH+PPY SYN HTL Sbjct: 4233 LYHLPPYYQSYNQHTL 4280
BLAST of EMLSAG00000004472 vs. C. finmarchicus
Match: gi|592764882|gb|GAXK01189686.1| (TSA: Calanus finmarchicus comp6858208_c0_seq1 transcribed RNA sequence) HSP 1 Score: 26.5646 bits (57), Expect = 6.956e+0 Identity = 11/40 (27.50%), Postives = 21/40 (52.50%), Query Frame = 0 Query: 10 GEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYN 49 GEQ +D + E+ S + +YD A+ +T + +Y+ Sbjct: 109 GEQSTLDGLIGEVASAQTAYDLAAADTKDAITACQEAAYD 228
BLAST of EMLSAG00000004472 vs. L. salmonis peptides
Match: EMLSAP00000004472 (pep:novel supercontig:LSalAtl2s:LSalAtl2s232:350320:360099:1 gene:EMLSAG00000004472 transcript:EMLSAT00000004472 description:"snap_masked-LSalAtl2s232-processed-gene-3.2") HSP 1 Score: 159.844 bits (403), Expect = 2.805e-52 Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTSKVYFNFYKKH 77 MVKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTSKVYFNFYKKH Sbjct: 1 MVKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTSKVYFNFYKKH 77
BLAST of EMLSAG00000004472 vs. L. salmonis peptides
Match: EMLSAP00000000442 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1068:97826:99509:1 gene:EMLSAG00000000442 transcript:EMLSAT00000000442 description:"augustus_masked-LSalAtl2s1068-processed-gene-1.2") HSP 1 Score: 95.9005 bits (237), Expect = 3.107e-26 Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSF 65 +VKY IYNIGEQPAVD QVKE+ PEDS+D SG+ SF L IPP+S NTHTL+V+ KKFG+F F Sbjct: 52 VVKYAIYNIGEQPAVDVQVKEVGFPEDSFDVVSGHASFKLDRIPPHSNNTHTLVVRPKKFGYFXF 116
BLAST of EMLSAG00000004472 vs. SwissProt
Match: gi|74965890|sp|Q22169.1|SSRB_CAEEL (RecName: Full=Translocon-associated protein subunit beta; Flags: Precursor) HSP 1 Score: 48.9062 bits (115), Expect = 1.421e-7 Identity = 22/68 (32.35%), Postives = 43/68 (63.24%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKEICS-PEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 +++YG+YN+G++PA + + S P +S+D G + IP S TH+++++ + FGFF++T+ Sbjct: 45 VLEYGLYNVGDKPAQKVTIDDRHSFPTNSFDIVKGLLFVHFEQIPAGSNVTHSVVIRPRAFGFFNYTA 112
BLAST of EMLSAG00000004472 vs. Select Arthropod Genomes
Match: XP_623954.1 (PREDICTED: translocon-associated protein subunit beta [Apis mellifera]) HSP 1 Score: 55.8398 bits (133), Expect = 1.929e-10 Identity = 24/67 (35.82%), Postives = 43/67 (64.18%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 ++KY +YNIG A++ ++ + D + SG + + +PPY+ +HT+IV+ +KFG+F+FTS Sbjct: 46 VIKYTVYNIGSAAALEVEITDNSFHPDHFTHVSGELNARIDRVPPYTNVSHTVIVRPRKFGYFNFTS 112
BLAST of EMLSAG00000004472 vs. Select Arthropod Genomes
Match: gb|EEC17421.1| (signal sequence receptor beta [Ixodes scapularis]) HSP 1 Score: 53.9138 bits (128), Expect = 1.059e-9 Identity = 27/67 (40.30%), Postives = 39/67 (58.21%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 +V Y IYN+G A+D +V + E ++ SG F L +PP S THT +V+ K+G F+FTS Sbjct: 46 IVDYNIYNVGGSAALDVKVVDNSFGEGDFEVVSGLLKFKLDRLPPGSNVTHTAVVRAIKYGRFNFTS 112
BLAST of EMLSAG00000004472 vs. Select Arthropod Genomes
Match: EFX79793.1 (hypothetical protein DAPPUDRAFT_230994 [Daphnia pulex]) HSP 1 Score: 48.1358 bits (113), Expect = 1.600e-7 Identity = 22/68 (32.35%), Postives = 40/68 (58.82%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKE-ICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 ++KY ++N+G A+D QV + P+D ++ G + I P S TH ++++ KFG+F+FT+ Sbjct: 46 VIKYSLFNVGGTAALDVQVADNTFGPQD-FEVVGGQLKVTIDRIAPGSNATHVVVIRPSKFGYFNFTA 112
BLAST of EMLSAG00000004472 vs. nr
Match: gi|225712054|gb|ACO11873.1| (Translocon-associated protein subunit beta precursor [Lepeophtheirus salmonis]) HSP 1 Score: 100.138 bits (248), Expect = 8.463e-25 Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 +VKY IYNIGEQPAVD QVKE+ PEDS+D SG+ SF L IPP+S NTHTL+V+ KKFG+F+FTS Sbjct: 52 VVKYAIYNIGEQPAVDVQVKEVGFPEDSFDVVSGHASFKLDRIPPHSNNTHTLVVRPKKFGYFNFTS 118
BLAST of EMLSAG00000004472 vs. nr
Match: gi|225712622|gb|ACO12157.1| (Translocon-associated protein subunit beta precursor [Lepeophtheirus salmonis] >gi|225714650|gb|ACO13171.1| Translocon-associated protein subunit beta precursor [Lepeophtheirus salmonis]) HSP 1 Score: 100.138 bits (248), Expect = 8.838e-25 Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 +VKY IYNIGEQPAVD QVKE+ PEDS+D SG+ SF L IPP+S NTHTL+V+ KKFG+F+FTS Sbjct: 52 VVKYAIYNIGEQPAVDVQVKEVGFPEDSFDVVSGHASFKLDRIPPHSNNTHTLVVRPKKFGYFNFTS 118
BLAST of EMLSAG00000004472 vs. nr
Match: gi|290562754|gb|ADD38772.1| (Translocon-associated protein subunit beta [Lepeophtheirus salmonis]) HSP 1 Score: 100.138 bits (248), Expect = 1.017e-24 Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 +VKY IYNIGEQPAVD QVKE+ PEDS+D SG+ SF L IPP+S NTHTL+V+ KKFG+F+FTS Sbjct: 52 VVKYAIYNIGEQPAVDVQVKEVGFPEDSFDVVSGHASFKLDRIPPHSNNTHTLVVRPKKFGYFNFTS 118
BLAST of EMLSAG00000004472 vs. nr
Match: gi|225708928|gb|ACO10310.1| (Translocon-associated protein subunit beta precursor [Caligus rogercresseyi]) HSP 1 Score: 95.1301 bits (235), Expect = 7.938e-23 Identity = 44/67 (65.67%), Postives = 53/67 (79.10%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 +VKYGIYNIG+ PAVD V E+ P+DS+D SG TSF L IPP+S NTHTL+V+ KKFG+FSFTS Sbjct: 53 VVKYGIYNIGDLPAVDVSVSEMGFPDDSFDVVSGQTSFKLDRIPPHSNNTHTLVVRPKKFGYFSFTS 119
BLAST of EMLSAG00000004472 vs. nr
Match: gi|225711116|gb|ACO11404.1| (Translocon-associated protein subunit beta precursor [Caligus rogercresseyi]) HSP 1 Score: 94.3597 bits (233), Expect = 1.304e-22 Identity = 43/68 (63.24%), Postives = 54/68 (79.41%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTSK 68 +VKYGIYNIG+ PAVD V E+ P+DS+D SG TSF L IPP+S NTHTL+V+ KKFG+F+FTS+ Sbjct: 53 VVKYGIYNIGDLPAVDVSVSEMGFPDDSFDVVSGQTSFKLDRIPPHSNNTHTLVVRPKKFGYFNFTSQ 120
BLAST of EMLSAG00000004472 vs. nr
Match: gi|225710348|gb|ACO11020.1| (Translocon-associated protein subunit beta precursor [Caligus rogercresseyi]) HSP 1 Score: 93.5893 bits (231), Expect = 3.371e-22 Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 +VKYGIYNIG+ PAVD V E+ P+DS+D ASG TSF L IPP+S NTH L+V+ KKFG+F+FTS Sbjct: 53 VVKYGIYNIGDLPAVDVSVSEMGFPDDSFDVASGQTSFKLDRIPPHSNNTHALVVRPKKFGYFNFTS 119
BLAST of EMLSAG00000004472 vs. nr
Match: gi|225719752|gb|ACO15722.1| (Translocon-associated protein subunit beta precursor [Caligus clemensi]) HSP 1 Score: 93.2041 bits (230), Expect = 5.191e-22 Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 ++KYGIYN+G+ PAVD VKE+ PEDS+D SG+ SF L +PP+S NTHTL+V+ KKFG+F+FTS Sbjct: 53 VIKYGIYNVGDLPAVDVSVKEVGFPEDSFDLVSGHASFKLDRVPPHSNNTHTLVVRPKKFGYFNFTS 119
BLAST of EMLSAG00000004472 vs. nr
Match: gi|332375172|gb|AEE62727.1| (unknown [Dendroctonus ponderosae]) HSP 1 Score: 59.6918 bits (143), Expect = 4.049e-9 Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 0 Query: 2 VKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 V+Y I+NIG+ PAV+ Q+ ++ ++++ G+ S IPP S TH ++V+ +FGFF+FTS Sbjct: 49 VRYAIHNIGKAPAVNVQLTDVGFNSEAFEIVGGHLSTKFARIPPESNFTHVVVVRPNRFGFFNFTS 114
BLAST of EMLSAG00000004472 vs. nr
Match: gi|1130247480|ref|XP_019765450.1| (PREDICTED: translocon-associated protein subunit beta [Dendroctonus ponderosae] >gi|478253891|gb|ENN74183.1| hypothetical protein YQE_09156, partial [Dendroctonus ponderosae] >gi|546684701|gb|ERL94318.1| hypothetical protein D910_11599 [Dendroctonus ponderosae]) HSP 1 Score: 59.3066 bits (142), Expect = 4.313e-9 Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 0 Query: 2 VKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 V+Y I+NIG+ PAV+ Q+ ++ ++++ G+ S IPP S TH ++V+ +FGFF+FTS Sbjct: 49 VRYAIHNIGKAPAVNVQLTDVGFNSEAFEIVGGHLSTKFARIPPESNFTHVVVVRPNRFGFFNFTS 114
BLAST of EMLSAG00000004472 vs. nr
Match: gi|1059857979|gb|AOG20523.1| (hypothetical protein, partial [Cloeon dipterum]) HSP 1 Score: 55.0694 bits (131), Expect = 2.691e-8 Identity = 21/67 (31.34%), Postives = 41/67 (61.19%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 +VKY +YN+G+ A+D + + PE+ + G L +PP + +HT++++ +FG+F+FT+ Sbjct: 4 VVKYTLYNVGQTAALDVHLDDFSFPEEMFKVVGGQLHVKLDRVPPQANVSHTVVLRPTRFGYFNFTA 70
BLAST of EMLSAG00000004472 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold91_size383040-snap-gene-1.29 (protein:Tk03177 transcript:maker-scaffold91_size383040-snap-gene-1.29-mRNA-1 annotation:"translocon-associated protein subunit beta precursor") HSP 1 Score: 48.9062 bits (115), Expect = 5.910e-9 Identity = 21/67 (31.34%), Postives = 39/67 (58.21%), Query Frame = 0 Query: 1 MVKYGIYNIGEQPAVDAQVKEICSPEDSYDAASGNTSFNLYHIPPYSYNTHTLIVKLKKFGFFSFTS 67 +VKY +YN+G+ A++ + E +D G S L + + ++H L+V+ K+FG+F+FT+ Sbjct: 59 VVKYSLYNVGQSAALNVVLSEKGFSAQDFDLVGGQMSVRLDRLAAGANHSHALVVRPKRFGYFNFTA 125 The following BLAST results are available for this feature:
BLAST of EMLSAG00000004472 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 15
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BLAST of EMLSAG00000004472 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 5
BLAST of EMLSAG00000004472 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000004472 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 1
BLAST of EMLSAG00000004472 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 3
BLAST of EMLSAG00000004472 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 25
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BLAST of EMLSAG00000004472 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s232:350320..360099+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000004472-687238 ID=EMLSAG00000004472-687238|Name=EMLSAG00000004472|organism=Lepeophtheirus salmonis|type=gene|length=9780bp|location=Sequence derived from alignment at LSalAtl2s232:350320..360099+ (Lepeophtheirus salmonis)back to top Add to Basket
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