EMLSAG00000005561, EMLSAG00000005561-688327 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000005561 vs. GO
Match: - (symbol:CG9640 species:7227 "Drosophila melanogaster" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150 "biological_process" evidence=ND] [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001214 SMART:SM00317 EMBL:AE013599 GeneTree:ENSGT00530000064389 EMBL:BT016013 RefSeq:NP_001261039.1 RefSeq:NP_611181.1 UniGene:Dm.11525 STRING:7227.FBpp0086126 EnsemblMetazoa:FBtr0086972 EnsemblMetazoa:FBtr0331984 GeneID:36916 KEGG:dme:Dmel_CG9640 UCSC:CG9640-RA FlyBase:FBgn0034182 eggNOG:NOG303017 InParanoid:Q5U179 OMA:NPLMGTS OrthoDB:EOG7J17ZH GenomeRNAi:36916 NextBio:801017 Uniprot:Q5U179) HSP 1 Score: 42.743 bits (99), Expect = 4.487e-4 Identity = 30/129 (23.26%), Postives = 57/129 (44.19%), Query Frame = 0 Query: 1 MKCKNCPGYMI----SNNPLDLNSSWSCLECQSVEKSQTIFGLILEFNIIFQKCIKNKFKLEELLSCKIAKYFHPNHFLLIGIMEQLVQIAMAEEKLETDILKKKKIYDKKLKYFKKITSVMEVIDVPG 125 +KCK CPG+ + SN L W C +C+++ + + L + + ++ E L + HPNHF+L+ I + + I A + + KK+ ++++ + V + VPG Sbjct: 281 LKCKECPGFSVCEIDSNGKL---GDWRCPDCRALLTAAEVHELQAAVGSALVDAMGD-LQVYEALLTQYGPLLHPNHFMLLDIKQNIASILRAAALMNSMDQPCKKLLARRVELCSDLLPVCRAV-VPG 404
BLAST of EMLSAG00000005561 vs. C. finmarchicus
Match: gi|592951726|gb|GAXK01006827.1| (TSA: Calanus finmarchicus comp68135_c0_seq3 transcribed RNA sequence) HSP 1 Score: 48.9062 bits (115), Expect = 7.886e-7 Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 0 Query: 1 MKCKNCPGYMISNNPLDLNSSWSCLECQSVEKSQTIFGLILEFNIIFQKCIKNKFKLEELLSCKIAKYFHPNHFL 75 +KCK G ++S NPLD ++ WSC +C ++ + I L F + LE+LL K K FHPNH+L Sbjct: 214 LKCKE--GLILSTNPLDGDADWSCGDCGFMKTADAIKKLNEYFMAAIIAATDDCSGLEDLLE-KSVKMFHPNHYL 429
BLAST of EMLSAG00000005561 vs. C. finmarchicus
Match: gi|592951728|gb|GAXK01006825.1| (TSA: Calanus finmarchicus comp68135_c0_seq1 transcribed RNA sequence) HSP 1 Score: 48.9062 bits (115), Expect = 1.232e-6 Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 0 Query: 1 MKCKNCPGYMISNNPLDLNSSWSCLECQSVEKSQTIFGLILEFNIIFQKCIKNKFKLEELLSCKIAKYFHPNHFL 75 +KCK G ++S NPLD ++ WSC +C ++ + I L F + LE+LL K K FHPNH+L Sbjct: 214 LKCKE--GLILSTNPLDGDADWSCGDCGFMKTADAIKKLNEYFMAAIIAATDDCSGLEDLLE-KSVKMFHPNHYL 429
BLAST of EMLSAG00000005561 vs. C. finmarchicus
Match: gi|592753559|gb|GAXK01200854.1| (TSA: Calanus finmarchicus comp293417_c0_seq1 transcribed RNA sequence) HSP 1 Score: 48.521 bits (114), Expect = 1.854e-6 Identity = 36/146 (24.66%), Postives = 68/146 (46.58%), Query Frame = 0 Query: 5 NCPGYMISNNPLDLNSSWSCLECQSVEKSQTIFGLILEFNIIFQKCIKNKFKLEELLSCKIAK---YFHPNHFLLIGIMEQLVQIAMAEEK------LETXXXXXXXXXXXXXXXXXXITSVMEVIDVPGYLWTQSLQKMINEEKK 141 +C GY++ P + S W C C K+ I G+ ++ K++ + E L I K + HPNH+L+ G+ E ++Q M + ++ + Y + F+ + ++++ +D G W + LQKM EE++ Sbjct: 1002 DCKGYLLPKCPTLVGSPWRCDTC---SKTVGISGVQTVMKMVLDDIGKHRDEDNESLLNVIKKQEEFVHPNHYLINGVKEIIIQRLMMTIREYNSGVSKSSPEEILAAYKLRTSLFRDVATILQTVDSVGAGWLEKLQKMAAEEQE 1430
BLAST of EMLSAG00000005561 vs. C. finmarchicus
Match: gi|592753021|gb|GAXK01201392.1| (TSA: Calanus finmarchicus comp145090_c1_seq3 transcribed RNA sequence) HSP 1 Score: 48.1358 bits (113), Expect = 2.602e-6 Identity = 26/95 (27.37%), Postives = 47/95 (49.47%), Query Frame = 0 Query: 1 MKCKNCP-GYMISNNPLDLNSSWSCLECQSVEKSQTIFGLILEFNIIFQKCIKNKFKLEELLSCKIAKYFHPNHFLLIGIMEQLVQIAMAEEKLE 94 + C C Y++ PLD N++W C+ C + + S TI + +F + + ++ + ELL K+ H NH+L+ +L+ I +E E Sbjct: 512 VNCDKCKYSYLLPLQPLDYNTTWECIGCDNTQSSDTIKTKLAKFEDQIEHVLPSEPEKYELLLRKMRYCLHENHYLITDCKRKLIDIYGHKEGFE 796
BLAST of EMLSAG00000005561 vs. C. finmarchicus
Match: gi|592753022|gb|GAXK01201391.1| (TSA: Calanus finmarchicus comp145090_c1_seq2 transcribed RNA sequence) HSP 1 Score: 47.7506 bits (112), Expect = 3.184e-6 Identity = 26/95 (27.37%), Postives = 47/95 (49.47%), Query Frame = 0 Query: 1 MKCKNCP-GYMISNNPLDLNSSWSCLECQSVEKSQTIFGLILEFNIIFQKCIKNKFKLEELLSCKIAKYFHPNHFLLIGIMEQLVQIAMAEEKLE 94 + C C Y++ PLD N++W C+ C + + S TI + +F + + ++ + ELL K+ H NH+L+ +L+ I +E E Sbjct: 632 VNCDKCKYSYLLPLQPLDYNTTWECIGCDNTQSSDTIKTKLAKFEDQIEHVLPSEPEKYELLLRKMRYCLHENHYLITDCKRKLIDIYGHKEGFE 916
BLAST of EMLSAG00000005561 vs. C. finmarchicus
Match: gi|592753023|gb|GAXK01201390.1| (TSA: Calanus finmarchicus comp145090_c1_seq1 transcribed RNA sequence) HSP 1 Score: 47.7506 bits (112), Expect = 3.518e-6 Identity = 26/95 (27.37%), Postives = 47/95 (49.47%), Query Frame = 0 Query: 1 MKCKNCP-GYMISNNPLDLNSSWSCLECQSVEKSQTIFGLILEFNIIFQKCIKNKFKLEELLSCKIAKYFHPNHFLLIGIMEQLVQIAMAEEKLE 94 + C C Y++ PLD N++W C+ C + + S TI + +F + + ++ + ELL K+ H NH+L+ +L+ I +E E Sbjct: 1062 VNCDKCKYSYLLPLQPLDYNTTWECIGCDNTQSSDTIKTKLAKFEDQIEHVLPSEPEKYELLLRKMRYCLHENHYLITDCKRKLIDIYGHKEGFE 1346
BLAST of EMLSAG00000005561 vs. C. finmarchicus
Match: gi|592816229|gb|GAXK01138339.1| (TSA: Calanus finmarchicus comp103296_c0_seq2 transcribed RNA sequence) HSP 1 Score: 45.0542 bits (105), Expect = 2.502e-5 Identity = 30/85 (35.29%), Postives = 44/85 (51.76%), Query Frame = 0 Query: 5 NCPGYMISNNPLDL--NSSWSCLECQSVEKSQTIFG----LILEFNIIFQKCIKNKFKLEELLSCKIAKYFHPNHFLLIGIMEQL 83 C G +I N+PLDL ++ W C EC S S + G ++ N I + I+ LE+ LS + K+ HPNH LI + + L Sbjct: 1022 RCGGNIIPNDPLDLTQDAVWKCQECSSTLPSLQVAGQERDQMMALNNIQRDDIRG---LEDFLS-RHKKHLHPNHASLIEVKKSL 1264
BLAST of EMLSAG00000005561 vs. C. finmarchicus
Match: gi|592816230|gb|GAXK01138338.1| (TSA: Calanus finmarchicus comp103296_c0_seq1 transcribed RNA sequence) HSP 1 Score: 45.0542 bits (105), Expect = 2.573e-5 Identity = 30/85 (35.29%), Postives = 44/85 (51.76%), Query Frame = 0 Query: 5 NCPGYMISNNPLDL--NSSWSCLECQSVEKSQTIFG----LILEFNIIFQKCIKNKFKLEELLSCKIAKYFHPNHFLLIGIMEQL 83 C G +I N+PLDL ++ W C EC S S + G ++ N I + I+ LE+ LS + K+ HPNH LI + + L Sbjct: 1022 RCGGNIIPNDPLDLTQDAVWKCQECSSTLPSLQVAGQERDQMMALNNIQRDDIRG---LEDFLS-RHKKHLHPNHASLIEVKKSL 1264
BLAST of EMLSAG00000005561 vs. C. finmarchicus
Match: gi|592876129|gb|GAXK01081448.1| (TSA: Calanus finmarchicus comp1098472_c0_seq1 transcribed RNA sequence) HSP 1 Score: 44.2838 bits (103), Expect = 3.985e-5 Identity = 24/81 (29.63%), Postives = 42/81 (51.85%), Query Frame = 0 Query: 8 GYMISNNPLDLNSSWSCLECQSVEKSQTIFGLILEFNIIFQKCIKNKFKLE--ELLSCKIAKYFHPNHFLLIGIMEQLVQI 86 G ++S NPL S WSC C ++ ++ + L+ E + +K + ++ E + H +H+L+IGI E+L QI Sbjct: 364 GLVLSCNPLSGPSDWSCQSCSTLYSAEYVINLVTEAAAMIEKPREEDDIIQHYERTIHHYSTTIHSSHYLIIGIKEKLAQI 606
BLAST of EMLSAG00000005561 vs. C. finmarchicus
Match: gi|592919596|gb|GAXK01038779.1| (TSA: Calanus finmarchicus comp672806_c0_seq1 transcribed RNA sequence) HSP 1 Score: 44.2838 bits (103), Expect = 4.560e-5 Identity = 26/91 (28.57%), Postives = 48/91 (52.75%), Query Frame = 0 Query: 9 YMISNNPLDLNSSWSCLECQSVEKSQTIFGLILEFNIIFQKCIKNKFKLEEL-------LSCKIAKYFHPNHFLLIGIMEQLVQIAMAEEK 92 +++ DL++ WSC +CQ+ ++TI L+L +KNK K ++ L + ++ HPNHFL++ + ++ V +A EK Sbjct: 318 FLLPTGSEDLHADWSCSQCQNTISNKTITMLVLG--------LKNKVKEKDGDLPGILDLLTSLEEFLHPNHFLILELKQKWVNMASKSEK 566
BLAST of EMLSAG00000005561 vs. L. salmonis peptides
Match: EMLSAP00000005561 (pep:novel supercontig:LSalAtl2s:LSalAtl2s29:789951:793868:1 gene:EMLSAG00000005561 transcript:EMLSAT00000005561 description:"maker-LSalAtl2s29-augustus-gene-8.4") HSP 1 Score: 290.041 bits (741), Expect = 1.830e-101 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 Query: 1 MKCKNCPGYMISNNPLDLNSSWSCLECQSVEKSQTIFGLILEFNIIFQKCIKNKFKLEELLSCKIAKYFHPNHFLLIGIMEQLVQIAMAEEKLETDILKKKKIYDKKLKYFKKITSVMEVIDVPGYLWTQSLQKMINEEKKLYT 144 MKCKNCPGYMISNNPLDLNSSWSCLECQSVEKSQTIFGLILEFNIIFQKCIKNKFKLEELLSCKIAKYFHPNHFLLIGIMEQLVQIAMAEEKLETDILKKKKIYDKKLKYFKKITSVMEVIDVPGYLWTQSLQKMINEEKKLYT Sbjct: 1 MKCKNCPGYMISNNPLDLNSSWSCLECQSVEKSQTIFGLILEFNIIFQKCIKNKFKLEELLSCKIAKYFHPNHFLLIGIMEQLVQIAMAEEKLETDILKKKKIYDKKLKYFKKITSVMEVIDVPGYLWTQSLQKMINEEKKLYT 144
BLAST of EMLSAG00000005561 vs. L. salmonis peptides
Match: EMLSAP00000005562 (pep:novel supercontig:LSalAtl2s:LSalAtl2s29:841770:891442:1 gene:EMLSAG00000005562 transcript:EMLSAT00000005562 description:"maker-LSalAtl2s29-augustus-gene-9.17") HSP 1 Score: 53.1434 bits (126), Expect = 4.941e-9 Identity = 48/145 (33.10%), Postives = 73/145 (50.34%), Query Frame = 0 Query: 1 MKCKNCP-GYMISNNPLDLNSSWSCLECQSVEKSQTIFGLI----LEFNIIFQKCIKNKFKLEELLSCKIAKYFHPNHFLLIGIMEQLVQIAMAEEKLETDILKKKKIYDKKLKYFKKITSVMEVIDV--PGYL-WTQS-LQKMI 136 + CK+C GY++ N L+ S WSC C + +TI +I + I + I +LEE+L K HPNH+++I IM L+ + A+E L T K++KI + SV+E + PGY W + LQ+MI Sbjct: 392 INCKHCKNGYLLPINSLNYESDWSCNNCDVIVNYKTISDIIDTIESQVRSIEHETID---ELEEMLY-HYQKLLHPNHYIVIDIMHNLIHVYAAKETL-TRPEKERKI--------QLCMSVLETLGRVDPGYTKWRGTILQEMI 523
BLAST of EMLSAG00000005561 vs. L. salmonis peptides
Match: EMLSAP00000003215 (pep:novel supercontig:LSalAtl2s:LSalAtl2s177:383113:385248:1 gene:EMLSAG00000003215 transcript:EMLSAT00000003215 description:"maker-LSalAtl2s177-augustus-gene-4.27") HSP 1 Score: 52.7582 bits (125), Expect = 6.536e-9 Identity = 32/129 (24.81%), Postives = 66/129 (51.16%), Query Frame = 0 Query: 4 KNCPGYMISNNPLDLNSSWSCLECQSVEKSQTIFGLILEFNIIFQKCIKNKFKLEELLSCKIAKYFHPNHFLLIGIMEQLVQIAMAEEKLETDILKKKKIYDKKLKYFKKITSVMEVIDVPGYLWTQSL 132 K C G++ S N L+ N+SW C C +V + + L + + +K E L ++ K+ HPNH++++ L++ A++ + + +I +++I K++ + I V +I PGY +++ Sbjct: 352 KTCKGFVYSENSLNTNASWICRACGAVMSHEEVTELTQKLEVEIEKEFLTIDDYENFLKNRLLKFLHPNHYIIVDFKFILMK-ALSRAEYDPEIRIQREIRKKRI--IEDILDVHSLI-TPGYFRIRAM 476
BLAST of EMLSAG00000005561 vs. Select Arthropod Genomes
Match: NP_001229486.1 (uncharacterized protein LOC724300 [Apis mellifera]) HSP 1 Score: 51.2174 bits (121), Expect = 1.737e-7 Identity = 37/127 (29.13%), Postives = 55/127 (43.31%), Query Frame = 0 Query: 1 MKCKNCPGYMISNNPLDLNSSWSCLECQSVEKSQTIFGLI--LEFNIIFQKCIKNKFKLEELLSCKIAKYFHPNHFLLIGIMEQLVQIAMAEEKLETDILKKKKIYDKKLKYFKKITSVMEVIDVPG 125 +KC G+++ NPLD +S W C C + + I LE ++ C K KL LLS ++ HP H L I + L+Q+ A+ KKL+ K+I E +D G Sbjct: 314 LKCPQDNGFILPKNPLDFDSEWGCDSCPGTLTASEMIQFIGKLEEDVDDVMCSARKDKLVNLLS-RLTTLLHPGHQLCITVSHSLIQLMPADNP-------------KKLELCKRIIETTETLDPYG 426
BLAST of EMLSAG00000005561 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold48_size466083-snap-gene-1.24 (protein:Tk05975 transcript:maker-scaffold48_size466083-snap-gene-1.24-mRNA-1 annotation:"hypothetical protein AND_003680") HSP 1 Score: 46.9802 bits (110), Expect = 2.937e-7 Identity = 28/90 (31.11%), Postives = 43/90 (47.78%), Query Frame = 0 Query: 1 MKCKN--CPGYMISNNPLDLNSSWSCLECQSVEKSQTIFGLILEFNIIFQK---CIKNKFKLEELLSCKIAKYFHPNHFLLIGIMEQLVQ 85 +KC++ C G++I N L+L SSW C CQ+V +S L ++ QK K + A Y HPNH L + ++L + Sbjct: 110 LKCQSSRCDGFLIPQNSLELESSWECQSCQAVLQSSVTLPLDMKLVAEAQKLEMASSGGIKCYQRFLAAYAPYLHPNHAFLCYLKQKLCE 199 The following BLAST results are available for this feature:
BLAST of EMLSAG00000005561 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 1
BLAST of EMLSAG00000005561 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000005561 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000005561 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000005561 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 1
BLAST of EMLSAG00000005561 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000005561 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s29:789951..793868+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000005561-688327 ID=EMLSAG00000005561-688327|Name=EMLSAG00000005561|organism=Lepeophtheirus salmonis|type=gene|length=3918bp|location=Sequence derived from alignment at LSalAtl2s29:789951..793868+ (Lepeophtheirus salmonis)back to top Add to Basket
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