EMLSAG00000005891, EMLSAG00000005891-688657 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000005891
Unique NameEMLSAG00000005891-688657
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000005891 vs. C. finmarchicus
Match: gi|592936862|gb|GAXK01021691.1| (TSA: Calanus finmarchicus comp434363_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 58.151 bits (139), Expect = 4.768e-10
Identity = 31/78 (39.74%), Postives = 43/78 (55.13%), Query Frame = 0 
Query:    2 LWDMKRCMCMCPISTWTACSTGYSFDFLDTCICLPINNNASTSILVTXXXXXXXXXXXXXGGYYIHHRNMKRNRIKAE 79
            +WD + C C CP  +W  CSTGY FD++ TC C+ I+  AS S+L  + I  +    S +GG  +     KR   KAE
Sbjct:  463 VWDPQTCQCHCPAQSWQHCSTGYMFDYVSTCSCVQISTVASKSVLAAACILFASITVSVVGGSLMFR--YKRGPFKAE 690
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BLAST of EMLSAG00000005891 vs. C. finmarchicus
Match: gi|592907340|gb|GAXK01051035.1| (TSA: Calanus finmarchicus comp2352838_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 53.5286 bits (127), Expect = 1.149e-8
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 0 
Query:    2 LWDMKRCMCMCPISTWTACSTGYSFDFLDTCICLPIN 38
            +WD   C C CP  TW ACS+GY +D+ D+C C+P++
Sbjct:  301 VWDPSSCQCHCPSQTWQACSSGYQYDYTDSCSCIPLH 411
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BLAST of EMLSAG00000005891 vs. C. finmarchicus
Match: gi|592953511|gb|GAXK01005042.1| (TSA: Calanus finmarchicus comp349269_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 50.8322 bits (120), Expect = 1.363e-7
Identity = 28/94 (29.79%), Postives = 41/94 (43.62%), Query Frame = 0 
Query:    2 LWDMKRCMCMCPISTWTACSTGYSFDFLDTCICLPINNNASTSILVTXXXXXXXXXXXXXGGYYIHHRNMKRNRIKAERRKEAVGFFMESNESE 95
            +WD + C CMC   TW  CSTGY FD  + C C+P +  AS  I+    +             Y     MK+ + +  RR+       E ++ E
Sbjct: 1014 VWDTQTCSCMCSPDTWKICSTGYLFDAQNRCDCVPAHYQASIPIVAIVGVAFLTGFGVVTSLMY-----MKKVKRRDGRRESLARILEEESDDE 1280
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BLAST of EMLSAG00000005891 vs. C. finmarchicus
Match: gi|592780283|gb|GAXK01174285.1| (TSA: Calanus finmarchicus comp231356_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 46.9802 bits (110), Expect = 3.074e-6
Identity = 18/43 (41.86%), Postives = 24/43 (55.81%), Query Frame = 0 
Query:    3 WDMKRCMCMCPISTWTACSTGYSFDFLDTCICLPINNNASTSI 45
            WD   C CMCP   + AC + Y FD+ D C C+P+   A T +
Sbjct:  958 WDKSTCQCMCPGRPYPACPSSYVFDYQDRCSCVPMQYYAFTEL 1086
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BLAST of EMLSAG00000005891 vs. C. finmarchicus
Match: gi|592828969|gb|GAXK01128480.1| (TSA: Calanus finmarchicus comp405359_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 45.4394 bits (106), Expect = 7.046e-6
Identity = 19/45 (42.22%), Postives = 25/45 (55.56%), Query Frame = 0 
Query:    2 LWDMKRCMCMCPISTWTACSTGYSFDFLDTCICLPINNNASTSIL 46
            +WD   C C CP  +W  CST Y +DF  TC C+ +   AS+  L
Sbjct:  879 VWDPSTCSCHCPAHSWQHCSTSYMYDFSTTCSCVQVYAVASSGHL 1013
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BLAST of EMLSAG00000005891 vs. C. finmarchicus
Match: gi|592954350|gb|GAXK01004203.1| (TSA: Calanus finmarchicus comp254248_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 45.0542 bits (105), Expect = 9.763e-6
Identity = 17/43 (39.53%), Postives = 24/43 (55.81%), Query Frame = 0 
Query:    3 WDMKRCMCMCPISTWTACSTGYSFDFLDTCICLPINNNASTSI 45
            WD   C CMCP   + +C + Y FD+  TC C+ + N A T +
Sbjct:  555 WDRDTCQCMCPGRPYPSCPSSYMFDYSITCSCIELQNTAFTEL 683
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BLAST of EMLSAG00000005891 vs. C. finmarchicus
Match: gi|592848757|gb|GAXK01108787.1| (TSA: Calanus finmarchicus comp297081_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 45.0542 bits (105), Expect = 1.128e-5
Identity = 21/47 (44.68%), Postives = 29/47 (61.70%), Query Frame = 0 
Query:    2 LWDMKRCMCMCPISTWTACSTGYSFDFLDTCICLPINNNASTSILVT 48
            LWDM+ C+C CP+     CSTG++FD + TC C+     +  S LVT
Sbjct:  659 LWDMEECVCRCPVEMVKPCSTGFTFD-MSTCSCI-TKEASEASHLVT 793
[Close]
BLAST of EMLSAG00000005891 vs. C. finmarchicus
Match: gi|592920567|gb|GAXK01037808.1| (TSA: Calanus finmarchicus comp397458_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 44.669 bits (104), Expect = 1.609e-5
Identity = 24/73 (32.88%), Postives = 39/73 (53.42%), Query Frame = 0 
Query:    2 LWDMKRCMCMCPISTWTACSTGYSFDFLDTCICLPINN-NASTSILVTXXXXXXXXXXXXXGGYYIHHRNMKR 73
            +WD   C C C    W  CSTG+++D + +C CLP    +AST +LVT  + +   + ++   Y +  R  +R
Sbjct:  792 MWDPALCQCQCRPEEWKECSTGFTYDGVYSCQCLPGPPISASTPLLVTMGVLVVVLMVTSASFYMMFKRTKQR 1010
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BLAST of EMLSAG00000005891 vs. C. finmarchicus
Match: gi|592848756|gb|GAXK01108788.1| (TSA: Calanus finmarchicus comp297081_c3_seq3 transcribed RNA sequence)

HSP 1 Score: 43.8986 bits (102), Expect = 2.022e-5
Identity = 21/47 (44.68%), Postives = 29/47 (61.70%), Query Frame = 0 
Query:    2 LWDMKRCMCMCPISTWTACSTGYSFDFLDTCICLPINNNASTSILVT 48
            LWDM+ C+C CP+     CSTG++FD + TC C+     +  S LVT
Sbjct:  659 LWDMEECVCRCPVEMVKPCSTGFTFD-MSTCSCI-TKEASEASHLVT 793
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BLAST of EMLSAG00000005891 vs. C. finmarchicus
Match: gi|592848755|gb|GAXK01108789.1| (TSA: Calanus finmarchicus comp297081_c3_seq4 transcribed RNA sequence)

HSP 1 Score: 43.8986 bits (102), Expect = 2.052e-5
Identity = 21/47 (44.68%), Postives = 29/47 (61.70%), Query Frame = 0 
Query:    2 LWDMKRCMCMCPISTWTACSTGYSFDFLDTCICLPINNNASTSILVT 48
            LWDM+ C+C CP+     CSTG++FD + TC C+     +  S LVT
Sbjct:  659 LWDMEECVCRCPVEMVKPCSTGFTFD-MSTCSCI-TKEASEASHLVT 793
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BLAST of EMLSAG00000005891 vs. L. salmonis peptides
Match: EMLSAP00000005891 (pep:novel supercontig:LSalAtl2s:LSalAtl2s319:177085:177378:-1 gene:EMLSAG00000005891 transcript:EMLSAT00000005891 description:"augustus_masked-LSalAtl2s319-processed-gene-1.7")

HSP 1 Score: 203.756 bits (517), Expect = 5.477e-69
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 
Query:    1 MLWDMKRCMCMCPISTWTACSTGYSFDFLDTCICLPINNNASTSILVTSIIFISFFIASAIGGYYIHHRNMKRNRIKAERRKEAVGFFMESNESEHN 97
            MLWDMKRCMCMCPISTWTACSTGYSFDFLDTCICLPINNNASTSILVTSIIFISFFIASAIGGYYIHHRNMKRNRIKAERRKEAVGFFMESNESEHN
Sbjct:    1 MLWDMKRCMCMCPISTWTACSTGYSFDFLDTCICLPINNNASTSILVTSIIFISFFIASAIGGYYIHHRNMKRNRIKAERRKEAVGFFMESNESEHN 97
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BLAST of EMLSAG00000005891 vs. L. salmonis peptides
Match: EMLSAP00000000061 (pep:novel supercontig:LSalAtl2s:LSalAtl2s100:182217:183023:-1 gene:EMLSAG00000000061 transcript:EMLSAT00000000061 description:"augustus_masked-LSalAtl2s100-processed-gene-1.11")

HSP 1 Score: 52.7582 bits (125), Expect = 1.307e-9
Identity = 22/64 (34.38%), Postives = 36/64 (56.25%), Query Frame = 0 
Query:    2 LWDMKRCMCMCPISTWTACSTGYSFDFLDTCICLPINNNASTSILVTSIIFISFFIASAIGGYY 65
            LW+ + C C+CP S+W  C TG+ FD+ +TC C+   N AS + +  + + + F   S  G  +
Sbjct:  170 LWNERNCGCICPQSSWRPCGTGFIFDYRETCTCVRAYNLASGNSVTLAXLIMGFITLSIAGSAF 233
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BLAST of EMLSAG00000005891 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold176_size284796-snap-gene-1.24 (protein:Tk06862 transcript:maker-scaffold176_size284796-snap-gene-1.24-mRNA-1 annotation:"vascular endothelial growth factor a-a")

HSP 1 Score: 52.373 bits (124), Expect = 8.894e-10
Identity = 19/42 (45.24%), Postives = 28/42 (66.67%), Query Frame = 0 
Query:    2 LWDMKRCMCMCPISTWTACSTGYSFDFLDTCICLPINNNAST 43
            +WD  +CMC CP+ST   CS+ + FDF ++C C+P  +N  T
Sbjct:  124 VWDPSKCMCRCPLSTLQECSSKHVFDFTNSCKCIPEESNEIT 165
The following BLAST results are available for this feature:
BLAST of EMLSAG00000005891 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005891 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592936862|gb|GAXK01021691.1|4.768e-1039.74TSA: Calanus finmarchicus comp434363_c0_seq1 trans... [more]
gi|592907340|gb|GAXK01051035.1|1.149e-848.65TSA: Calanus finmarchicus comp2352838_c0_seq1 tran... [more]
gi|592953511|gb|GAXK01005042.1|1.363e-729.79TSA: Calanus finmarchicus comp349269_c1_seq1 trans... [more]
gi|592780283|gb|GAXK01174285.1|3.074e-641.86TSA: Calanus finmarchicus comp231356_c0_seq1 trans... [more]
gi|592828969|gb|GAXK01128480.1|7.046e-642.22TSA: Calanus finmarchicus comp405359_c0_seq1 trans... [more]
gi|592954350|gb|GAXK01004203.1|9.763e-639.53TSA: Calanus finmarchicus comp254248_c0_seq1 trans... [more]
gi|592848757|gb|GAXK01108787.1|1.128e-544.68TSA: Calanus finmarchicus comp297081_c3_seq2 trans... [more]
gi|592920567|gb|GAXK01037808.1|1.609e-532.88TSA: Calanus finmarchicus comp397458_c0_seq1 trans... [more]
gi|592848756|gb|GAXK01108788.1|2.022e-544.68TSA: Calanus finmarchicus comp297081_c3_seq3 trans... [more]
gi|592848755|gb|GAXK01108789.1|2.052e-544.68TSA: Calanus finmarchicus comp297081_c3_seq4 trans... [more]

Pages

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BLAST of EMLSAG00000005891 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000058915.477e-69100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s319:17708... [more]
EMLSAP000000000611.307e-934.38pep:novel supercontig:LSalAtl2s:LSalAtl2s100:18221... [more]
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BLAST of EMLSAG00000005891 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005891 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005891 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005891 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold176_size284796-snap-gene-1.248.894e-1045.24protein:Tk06862 transcript:maker-scaffold176_size2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s319supercontigLSalAtl2s319:177085..177378 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s319-processed-gene-1.7
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000005891 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000005891EMLSAT00000005891-701738Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s319:177085..177378-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000005891-688657 ID=EMLSAG00000005891-688657|Name=EMLSAG00000005891|organism=Lepeophtheirus salmonis|type=gene|length=294bp|location=Sequence derived from alignment at LSalAtl2s319:177085..177378- (Lepeophtheirus salmonis)
ATGTTGTGGGATATGAAGCGCTGTATGTGCATGTGCCCAATATCCACCTG
GACTGCATGCTCCACAGGCTATTCTTTTGACTTTTTAGATACATGTATTT
GTCTTCCAATCAACAATAATGCGTCAACGAGTATTCTGGTTACCTCCATC
ATTTTCATATCATTTTTCATTGCTTCCGCTATTGGTGGATATTATATACA
TCATCGAAACATGAAAAGAAATAGAATAAAGGCTGAGAGACGGAAAGAGG
CAGTCGGTTTCTTTATGGAGTCCAATGAAAGTGAACATAACTAA
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