EMLSAG00000006490, EMLSAG00000006490-689256 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006490
Unique NameEMLSAG00000006490-689256
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000006490 vs. L. salmonis peptides
Match: EMLSAP00000006490 (pep:novel supercontig:LSalAtl2s:LSalAtl2s355:2804:4923:-1 gene:EMLSAG00000006490 transcript:EMLSAT00000006490 description:"maker-LSalAtl2s355-augustus-gene-1.10")

HSP 1 Score: 360.147 bits (923), Expect = 6.731e-128
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0 
Query:    1 MKHLLSFFLTVFTFGKGSESNDIQRPLLYYSPLDPQKMFLEDNDEYSTNKLINNGLNFPQLVTKFVLNPESEYFENKNELEGDSLLNVKQGLYKRSPFSVDFMGMRVSYPIYLRLTALQKKVIELDKIIRKMRKSNREEDLLKNPRWQTLLMYHKSLKKMLPVSYLRSIGEDYAVPLN 178
            MKHLLSFFLTVFTFGKGSESNDIQRPLLYYSPLDPQKMFLEDNDEYSTNKLINNGLNFPQLVTKFVLNPESEYFENKNELEGDSLLNVKQGLYKRSPFSVDFMGMRVSYPIYLRLTALQKKVIELDKIIRKMRKSNREEDLLKNPRWQTLLMYHKSLKKMLPVSYLRSIGEDYAVPLN
Sbjct:    1 MKHLLSFFLTVFTFGKGSESNDIQRPLLYYSPLDPQKMFLEDNDEYSTNKLINNGLNFPQLVTKFVLNPESEYFENKNELEGDSLLNVKQGLYKRSPFSVDFMGMRVSYPIYLRLTALQKKVIELDKIIRKMRKSNREEDLLKNPRWQTLLMYHKSLKKMLPVSYLRSIGEDYAVPLN 178
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BLAST of EMLSAG00000006490 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold119_size336447-snap-gene-2.28 (protein:Tk11783 transcript:maker-scaffold119_size336447-snap-gene-2.28-mRNA-1 annotation:"hypothetical protein")

HSP 1 Score: 77.411 bits (189), Expect = 6.664e-19
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 0 
Query:   94 KRSPFSVDFMGMRVSYPIYLRLTALQKKVIELDKIIRKMRKSNREEDLLKNPRWQTLLMYHKSLKKMLPVSY 165
            KRS  SV+FMGM VSYP Y+RL  +Q++VI +DK+IR+MR++    +L +NP W  L+  + +LK MLPV Y
Sbjct:   57 KRS--SVEFMGMTVSYPQYIRLRNIQREVIRMDKVIRRMRQTRDPMELAQNPHWTELMELYDALKSMLPVDY 126
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BLAST of EMLSAG00000006490 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold191_size271209-processed-gene-0.7 (protein:Tk06178 transcript:snap_masked-scaffold191_size271209-processed-gene-0.7-mRNA-1 annotation:"AGAP009693-PA")

HSP 1 Score: 56.9954 bits (136), Expect = 3.386e-10
Identity = 29/81 (35.80%), Postives = 50/81 (61.73%), Query Frame = 0 
Query:   98 FSVDFMGMRVSYPIYLRLTALQKKVIELDKIIRKMRKSNREEDLLKNPRWQTLLMYHKSLKKMLPVSYLRSIGEDYAVPLN 178
            F+VDF GM+VSYP Y+RL+ LQ KV++L K+I+ + +    E L   P++  L+  ++SL+ +LP +  + +      P+ 
Sbjct:  584 FTVDFNGMQVSYPTYVRLSRLQAKVVKLQKMIQLLHRRYTPEQLDGLPQYGRLMELYESLRPLLPSNTFQELVPPEPTPIG 664

HSP 2 Score: 54.299 bits (129), Expect = 3.098e-9
Identity = 28/76 (36.84%), Postives = 47/76 (61.84%), Query Frame = 0 
Query:   89 KQGLYKRSPFSVDFMGMRVSYPIYLRLTALQKKVIELDKIIRKMRKSNREEDLLKNPRWQTLLMYHKSLKKMLPVS 164
            KQ   ++     +F G++VSYP YL L +LQ+KV +LD ++ K+      E+L + P+W+ L    +SL ++LP+S
Sbjct:  826 KQMSAQKRGLVTEFNGVQVSYPQYLHLMSLQRKVRKLDSVMGKIASLRSPEELAQTPQWRKLKDLRQSLIRLLPLS 901

HSP 3 Score: 49.2914 bits (116), Expect = 1.460e-7
Identity = 27/74 (36.49%), Postives = 42/74 (56.76%), Query Frame = 0 
Query:   92 LYKRSPFSVDFMGMRVSYPIYLRLTALQKKVIELDKIIRKMRKSNREEDLLKNPRWQTLLMYHKSLKKMLPVSY 165
            L +R+  S  F  M VS P Y RL  +QK  ++LD ++RKM K    + L  +P+W  L+   +SL+ +LP  +
Sbjct:  747 LGERAKRSTKFKNMYVSVPEYGRLMKMQKTALKLDSLLRKMVKDIGLDRLQADPKWNDLVQLRESLQTVLPEDH 820
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006490 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006490 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006490 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000064906.731e-128100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s355:2804:... [more]
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BLAST of EMLSAG00000006490 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006490 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006490 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006490 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
maker-scaffold119_size336447-snap-gene-2.286.664e-1951.39protein:Tk11783 transcript:maker-scaffold119_size3... [more]
snap_masked-scaffold191_size271209-processed-gene-0.73.386e-1035.80protein:Tk06178 transcript:snap_masked-scaffold191... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s355supercontigLSalAtl2s355:2804..4923 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s355-augustus-gene-1.10
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006490 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006490EMLSAT00000006490-702337Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s355:2804..4923-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006490-689256 ID=EMLSAG00000006490-689256|Name=EMLSAG00000006490|organism=Lepeophtheirus salmonis|type=gene|length=2120bp|location=Sequence derived from alignment at LSalAtl2s355:2804..4923- (Lepeophtheirus salmonis)
ATGAAACACTTGTTATCATTTTTTCTTACTGTCTTTACTTTTGGTAAAGG
AAGTGAGAGCAACGACATTCAAAGGCCATTGCTGTATTATTCTCCACTCG
ATCCTCAAAAAGTATGTATAATTTTTGTTCAATCTTAATACCAATCTTGT
AAATTTTTTGAATGAATGGCATTCATATAAAAAAAAAAGTATTAAGATCT
CACCAAGTAGATACATTGTACACGGATTCTAAAAAAAATATTTTAGCTAT
ATAAGATTTACATGGGTAAATTGGATATCTTTTTGAAATTTATGAATTAT
AGATAACAAAAAATTAAAAGGCATTTAATTTATTTTACTAATTTCATATT
CGTAATAAAAACTCTATCATAAATCAAAAGATTCGTAATGACAGAATAAA
TCAATCACTTATATGAACTATTACTAAGATATGTTCTTCATAACCTAACA
AGTCATATAACCATTGCTTGAGTTGTAGGGAGTTGCCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ATTACATTCTGATTCTAGCTGATCTAATGAACCGTCATGCCAGCTAATCT
GCTCTCCTTCAAAACNATGTCGATTTTTATTTTCTTTTAACCCGCCCAAA
ATACACGCAATTTTCATAGCCAACAGGTCCAAAATTCTACTGTTTAGCAT
CACTTTGATGACATATATCTCTCTCTGAAAGATGAATTCCAGCTTATATT
TTGTGTATTTTTTTTTTAGATACATGTTGAAATAATATAAATATACCCAG
CATGTATCCATAATCTATATTTAAATATAACTYAAATATTTTACCTKCAR
AAATACATATTTAAATATTGAAAGTTATCTTTTTTATAATGATCTAGTTT
TTAATAAGGCCTGATCTTAGTGTTTTTAACATTTTTTAAATATCAAACTA
CAAATTTAAGTAAAAATTGGTCTTCCTCATATTTTTTAAATACAATTTTT
GTATCTGAACAATTATTTTTTATAATTTTTTTAAGTTTAAAATCTTAAAA
TAAAAAACTCATAACTAAGTACGGATATCGTTTAATATGTTTATTTCAAA
GAATTACCYACAAAAAATACCAGTTATGCACTAGGAACTGTAGGTGTATA
AAATATATATAAGAAGAAGGATCTATGACTTAAGTAGGGGGAAAAAGGAA
AAACAAAATGGCGTCGATAGACTTCCATGTATCCAAAATTCCATGAATGA
GCTTGCATTTAGTTATTCGTTTACAAGCTATTTTAAATATGAAATATCCA
TCTAGGTATATATATAGGTTTGCTATAATCAAGTGCTTCACATTTTATTT
GTCTCAATTTTTCAAAACTAAAATTTAAACGAAAGATTTTATGAGAACAT
TTATTTAATAGAATCATCTGAAAATAGTGGTTGGCGCAACTTTTATTCAT
TATGTGAGCCCTTAGCTCTAATAATAGGCTCGTAGGTGTACTTTTAAGTA
TCACTCGCATCAAAATGAGTCCAATTGGTATTCTTTGTGTTCTCTGAAAG
GAATAAACATTAATAATTACTTCAAATGAATATTGAAAGTTGATTCAGTT
CATATTAAATTTAATAATATTATTTGTTAATTATTAAATGACAATAGCAT
ATCATATTATTATTATATTTTTTTCAATTTAATTCTTTTTATAGATGTTC
CTTGAGGATAATGATGAATATTCAACAAATAAATTAATAAATAATGGTTT
GAACTTCCCTCAACTCGTTACTAAATTTGTACTTAATCCAGAGTCTGAAT
ATTTCGAGAATAAAAATGAACTGGAAGGAGATTCGTTATTAAATGTAAAG
CAAGGATTATATAAGCGAAGTCCATTTTCTGTGGATTTTATGGGGATGAG
AGTATCATATCCAATTTATCTGAGACTAACAGCTCTTCAAAAAAAAGTGA
TCGAGTTAGACAAAATTATTCGAAAGATGAGGAAAAGTAATAGAGAGGAA
GATTTGTTGAAAAATCCTCGTTGGCAAACACTTCTTATGTATCACAAATC
TCTGAAAAAAATGCTACCTGTATCCTATTTACGGTCCATTGGAGAAGACT
ATGCTGTTCCATTGAATTGA
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