EMLSAG00000007297, EMLSAG00000007297-690063 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000007297 vs. C. finmarchicus
Match: gi|592947521|gb|GAXK01011032.1| (TSA: Calanus finmarchicus comp4961351_c0_seq2 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 2.534e+0 Identity = 9/26 (34.62%), Postives = 19/26 (73.08%), Query Frame = 0
Query: 42 ARNSECLSCKRKGHFTRMCKSAKQNS 67
A+ C+ C++K H +++CKS +Q++
Sbjct: 141 AQGKTCVKCQKKNHLSQVCKSRRQSA 218
BLAST of EMLSAG00000007297 vs. C. finmarchicus
Match: gi|592914355|gb|GAXK01044020.1| (TSA: Calanus finmarchicus comp131565_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 5.100e+0 Identity = 22/79 (27.85%), Postives = 40/79 (50.63%), Query Frame = 0
Query: 338 LTRVCVGSMQTLTNDFVNLI----SNRDNISVCEMQSKAWDLINEI-SKDRTDLKEALVKDMVLNCIPISSCQHLTQGF 411
L ++ VG+ +T +D +++I N+DN E+ +AW+ NE ++ + L AL+K + N + C GF
Sbjct: 876 LFQLKVGNERTSVHDSLDMIITQTPNKDNPFAMEISEEAWETYNECNAQGKEYLASALLKTLSFNYL----CHEADDGF 1100
BLAST of EMLSAG00000007297 vs. C. finmarchicus
Match: gi|592913754|gb|GAXK01044621.1| (TSA: Calanus finmarchicus comp4702130_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 6.339e+0 Identity = 12/32 (37.50%), Postives = 20/32 (62.50%), Query Frame = 0
Query: 42 ARNSECLSCKRKGHFTRMCKSAKQNSVTILME 73
A +C C +K HF ++C+S+K+N T +E
Sbjct: 8 AAGKQCEKCGKKDHFAKVCRSSKKNEETQKVE 103
BLAST of EMLSAG00000007297 vs. L. salmonis peptides
Match: EMLSAP00000007297 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4109:944:7110:-1 gene:EMLSAG00000007297 transcript:EMLSAT00000007297 description:"augustus-LSalAtl2s4109-processed-gene-0.0") HSP 1 Score: 926.391 bits (2393), Expect = 0.000e+0 Identity = 459/459 (100.00%), Postives = 459/459 (100.00%), Query Frame = 0
Query: 1 MQIGNLLTGWDSEEGVSVEEDRWREVGVNFVGNVDXXXXXXARNSECLSCKRKGHFTRMCKSAKQNSVTILMEIIKWKLQTRVIVEQWFLLLYLKYLKKIKFDRKGSTFDPKIVGVNGSSMHILGVVQLIMKLGSRSYRETVYVVGNITENELFIFQNARIHFGVLHPDFPQQLKKEWIDQPLGIESVRTIMHSKIKEVENQLLEEFSILSENAKPFARHSARQIPFCYRGQVKNMLDDRVKKDVIVKVEDETTEWCHAIVIVSKQNVKLPSFTTLRPTGXFLRIXXQFELAKITQERTKFNYLLSAIPEDLLYKVLYYSLNKCLKSEQPYSDLKVLLTRVCVGSMQTLTNDFVNLISNRDNISVCEMQSKAWDLINEISKDRTDLKEALVKDMVLNCIPISSCQHLTQGFRGLSYEKFIRCARTEENVRTLKLTCYIEKERDEVKGINIIRRNAEPNT 459
MQIGNLLTGWDSEEGVSVEEDRWREVGVNFVGNVDXXXXXXARNSECLSCKRKGHFTRMCKSAKQNSVTILMEIIKWKLQTRVIVEQWFLLLYLKYLKKIKFDRKGSTFDPKIVGVNGSSMHILGVVQLIMKLGSRSYRETVYVVGNITENELFIFQNARIHFGVLHPDFPQQLKKEWIDQPLGIESVRTIMHSKIKEVENQLLEEFSILSENAKPFARHSARQIPFCYRGQVKNMLDDRVKKDVIVKVEDETTEWCHAIVIVSKQNVKLPSFTTLRPTGXFLRIXXQFELAKITQERTKFNYLLSAIPEDLLYKVLYYSLNKCLKSEQPYSDLKVLLTRVCVGSMQTLTNDFVNLISNRDNISVCEMQSKAWDLINEISKDRTDLKEALVKDMVLNCIPISSCQHLTQGFRGLSYEKFIRCARTEENVRTLKLTCYIEKERDEVKGINIIRRNAEPNT
Sbjct: 1 MQIGNLLTGWDSEEGVSVEEDRWREVGVNFVGNVDXXXXXXARNSECLSCKRKGHFTRMCKSAKQNSVTILMEIIKWKLQTRVIVEQWFLLLYLKYLKKIKFDRKGSTFDPKIVGVNGSSMHILGVVQLIMKLGSRSYRETVYVVGNITENELFIFQNARIHFGVLHPDFPQQLKKEWIDQPLGIESVRTIMHSKIKEVENQLLEEFSILSENAKPFARHSARQIPFCYRGQVKNMLDDRVKKDVIVKVEDETTEWCHAIVIVSKQNVKLPSFTTLRPTGXFLRIXXQFELAKITQERTKFNYLLSAIPEDLLYKVLYYSLNKCLKSEQPYSDLKVLLTRVCVGSMQTLTNDFVNLISNRDNISVCEMQSKAWDLINEISKDRTDLKEALVKDMVLNCIPISSCQHLTQGFRGLSYEKFIRCARTEENVRTLKLTCYIEKERDEVKGINIIRRNAEPNT 459
BLAST of EMLSAG00000007297 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold79_size400133-snap-gene-1.10 (protein:Tk03952 transcript:maker-scaffold79_size400133-snap-gene-1.10-mRNA-1 annotation:"PREDICTED: uncharacterized protein LOC101738874") HSP 1 Score: 51.2174 bits (121), Expect = 2.781e-7 Identity = 40/141 (28.37%), Postives = 72/141 (51.06%), Query Frame = 0
Query: 264 SKQNVKLPSFTTLRPTGXFLRIXXQFELAKITQERTKFNYLLSAIPEDLLYKVLYYSLNKCLKSEQPYSDL-KVLLTRVCVGSMQTLTNDFVNLISNRDNISVCEMQSKAWDLINEI-SKDRTDLKEALVKDMVLNCIPIS 402
S + LP+F + P +F L KI+ TK +++L+A+P ++L V + + L + +PY DL K LL+R ++ L+ L+ R++ + + + L N + S D DLKE L+K++ + +P S
Sbjct: 75 SGDDFDLPTFASESPERWLFIAESKFRLRKISNSLTKHDHVLAALPPEILGSV--HLSDVSLTAGEPYEDLKKTLLSRFLPKPLERLS----ALLDYRNSDTKVLVHT----LSNLLASADMIDLKELLIKEIAIRSLPAS 205
BLAST of EMLSAG00000007297 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold486_size158769-processed-gene-0.14 (protein:Tk09326 transcript:snap_masked-scaffold486_size158769-processed-gene-0.14-mRNA-1 annotation:"hypothetical protein DAPPUDRAFT_258391") HSP 1 Score: 50.8322 bits (120), Expect = 6.250e-7 Identity = 80/319 (25.08%), Postives = 132/319 (41.38%), Query Frame = 0
Query: 113 IVGVNGSSMHILGVVQLIMKLGSRSYRETVYVVGNITENELFIFQNARI--HFGVLHPDFPQQLKKEWIDQ--PLGIESVRTIMHSKIKEV----ENQLLEEFSI-----LSENAKPFARHSARQIPFCYRGQVKNMLDDRVKKDVIVKVEDETTEWCHAIVIVSKQNVKLPSFTTLRPTGXFLRIXXQFELAKITQERTKFNYLLSAIPEDLLYKVLYYSLNKCLKSEQPYSDLKVLLTRVCVGSMQTLTNDFVNLISNRDNISV--CEMQSKAWDLINEISKDRTDLKEALVKDM------VLNCIPISSCQHLTQG 410
+ G NG+ ++ LG V+ ++ G+ E ++ IT+ + N + G++H +FP+ L + G V T++H + ++V EN L+ L + AKP R IPF R +VK D +++VI KV +E TEWCH + V V + + T L L + EL QE+ L E L K + + P D + +V GS + + N +N N + C+++ L + + R L E +KD+ +L+ I I S L G
Sbjct: 331 LYGANGTIINTLGRVRARVQYGTIQA-EVTFI---ITDEYVRTIINLKTCQDLGIIHKEFPRPLVGTVSKRQTSCGRADVSTLIH-EFQDVFDNGENALVPMDGPPMVIELGKAAKPNYVKGPRPIPFANRNKVKEKFDSLEEREVITKV-NEPTEWCHGMS-VGNFPVLVHTITALEGR---LPLVKSMELVDELQEK----LTLEPFAEKL----------KTVLKKNPGLDKMRKVAKVLKGSQEDFEGNDPNTTANLANAPMVTCDVERTFSALRDLNTPKRARLSEEHIKDVLIIQWNLLDNISIQSADELLAG 625 The following BLAST results are available for this feature:
BLAST of EMLSAG00000007297 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000007297 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 3
BLAST of EMLSAG00000007297 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000007297 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000007297 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000007297 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000007297 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s4109:944..7110- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000007297-690063 ID=EMLSAG00000007297-690063|Name=EMLSAG00000007297|organism=Lepeophtheirus salmonis|type=gene|length=6167bp|location=Sequence derived from alignment at LSalAtl2s4109:944..7110- (Lepeophtheirus salmonis)back to top Add to Basket
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