EMLSAG00000007745, EMLSAG00000007745-690511 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007745
Unique NameEMLSAG00000007745-690511
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000007745 vs. C. finmarchicus
Match: gi|592892391|gb|GAXK01065984.1| (TSA: Calanus finmarchicus comp5093_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 47.3654 bits (111), Expect = 4.766e-7
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 0 
Query:    4 FLGEIQPNILRKIQAPVIFYFLVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGH 70
            FL  +  N+L +  A V      STP+ + + + G V + KTST  KSM+LKFK+G++FEETT++G 
Sbjct:   90 FLKALDVNMLLRKAATV------STPTVE-ISEAGGVWTIKTSTTLKSMELKFKLGEEFEETTADGR 269
[Close]
BLAST of EMLSAG00000007745 vs. C. finmarchicus
Match: gi|592856316|gb|GAXK01101228.1| (TSA: Calanus finmarchicus comp6189_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 44.2838 bits (103), Expect = 1.532e-5
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 0 
Query:    4 FLGEIQPNILRKIQAPVIFYFLVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGH 70
             L E+  N L +  A V      STP  + V +EG V + KTST  K+M+LKFK+G+ F+ETT +G 
Sbjct:  483 LLKELDVNFLLRKAATV------STPVME-VSEEGGVWNIKTSTTLKTMELKFKLGEAFDETTPDGR 662
[Close]
BLAST of EMLSAG00000007745 vs. C. finmarchicus
Match: gi|592785878|gb|GAXK01168690.1| (TSA: Calanus finmarchicus comp891_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 43.1282 bits (100), Expect = 2.007e-5
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 0 
Query:    4 FLGEIQPNILRKIQAPVIFYFLVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEG 69
            FL  ++ N L +  A V      STP  + V ++G   + KTST  K+M+LKFK+G++F+ETT +G
Sbjct:  232 FLKALEVNFLLRKAATV------STPVME-VSEDGGAWTIKTSTTLKTMELKFKLGEEFDETTPDG 408
[Close]
BLAST of EMLSAG00000007745 vs. C. finmarchicus
Match: gi|592926628|gb|GAXK01031820.1| (TSA: Calanus finmarchicus comp20956_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 43.1282 bits (100), Expect = 3.296e-5
Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 0 
Query:   26 VSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGH 70
            +STP  + + + G + S KTST  K+M+LKFK+G+KF+ETT +G 
Sbjct:  280 ISTPVME-ISETGGIWSLKTSTTLKTMELKFKLGEKFDETTPDGR 411
[Close]
BLAST of EMLSAG00000007745 vs. C. finmarchicus
Match: gi|592766264|gb|GAXK01188304.1| (TSA: Calanus finmarchicus comp11284_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 3.302e-5
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 0 
Query:   26 VSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGHTLEKLPR-KGGKRV 83
            VSTP  + + +   V S K+ST  KSM+LKFKVG +F+ET+++G  ++ +   +GGK V
Sbjct:  146 VSTPVME-ITENNGVWSIKSSTSLKSMELKFKVGVEFDETSADGRDVKSICNFEGGKIV 319
[Close]
BLAST of EMLSAG00000007745 vs. C. finmarchicus
Match: gi|592766265|gb|GAXK01188303.1| (TSA: Calanus finmarchicus comp11284_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 4.198e-5
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 0 
Query:   26 VSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGHTLEKLPR-KGGKRV 83
            VSTP  + + +   V S K+ST  KSM+LKFKVG +F+ET+++G  ++ +   +GGK V
Sbjct:  146 VSTPVME-ITENNGVWSIKSSTSLKSMELKFKVGVEFDETSADGRDVKSICNFEGGKIV 319
[Close]
BLAST of EMLSAG00000007745 vs. C. finmarchicus
Match: gi|592882875|gb|GAXK01075500.1| (TSA: Calanus finmarchicus comp6348727_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 39.2762 bits (90), Expect = 2.079e-4
Identity = 20/45 (44.44%), Postives = 32/45 (71.11%), Query Frame = 0 
Query:   26 VSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGH 70
             STP+ + + +E  V +FKTST  K+M++KFK+ + F+ETT +G 
Sbjct:  108 ASTPTLE-ITEEDGVWTFKTSTTLKTMEMKFKLKEPFDETTPDGR 239
[Close]
BLAST of EMLSAG00000007745 vs. C. finmarchicus
Match: gi|592775866|gb|GAXK01178702.1| (TSA: Calanus finmarchicus comp14576_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 39.2762 bits (90), Expect = 4.073e-4
Identity = 26/78 (33.33%), Postives = 44/78 (56.41%), Query Frame = 0 
Query:    1 MIAFLGEIQPN-------ILRKIQAPVIF--YFLVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEG 69
            M AF G+ + N        L+ +   ++F     +S+P  + + + G     KTST  K+M+LKFK+G+KF+E T++G
Sbjct:   14 MEAFKGKFERNKQENFEEFLKALDCGMLFRKAATISSPVME-ISESGGGWCLKTSTTMKTMELKFKLGEKFDEHTTDG 244
[Close]
BLAST of EMLSAG00000007745 vs. C. finmarchicus
Match: gi|592775867|gb|GAXK01178701.1| (TSA: Calanus finmarchicus comp14576_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 39.2762 bits (90), Expect = 4.944e-4
Identity = 26/78 (33.33%), Postives = 44/78 (56.41%), Query Frame = 0 
Query:    1 MIAFLGEIQPN-------ILRKIQAPVIF--YFLVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEG 69
            M AF G+ + N        L+ +   ++F     +S+P  + + + G     KTST  K+M+LKFK+G+KF+E T++G
Sbjct:  267 MEAFKGKFERNKQENFEEFLKALDCGMLFRKAATISSPVME-ISESGGGWCLKTSTTMKTMELKFKLGEKFDEHTTDG 497
[Close]
BLAST of EMLSAG00000007745 vs. C. finmarchicus
Match: gi|592839066|gb|GAXK01118478.1| (TSA: Calanus finmarchicus comp124765_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 7.991e-3
Identity = 19/46 (41.30%), Postives = 30/46 (65.22%), Query Frame = 0 
Query:   25 LVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGH 70
            L STP    + +EG   +  T T  K+++LKFK+G++FEE T++G 
Sbjct:  164 LASTPVM-SITEEGGRWTMTTKTSLKAIELKFKLGEEFEEDTTDGR 298
[Close]
BLAST of EMLSAG00000007745 vs. L. salmonis peptides
Match: EMLSAP00000007745 (pep:novel supercontig:LSalAtl2s:LSalAtl2s450:370568:370879:1 gene:EMLSAG00000007745 transcript:EMLSAT00000007745 description:"snap_masked-LSalAtl2s450-processed-gene-3.4")

HSP 1 Score: 204.527 bits (519), Expect = 4.407e-69
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:    1 MIAFLGEIQPNILRKIQAPVIFYFLVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGHTLEKLPRKGGKRVPRLFVTSRMEIVPQSLRSCG 103
            MIAFLGEIQPNILRKIQAPVIFYFLVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGHTLEKLPRKGGKRVPRLFVTSRMEIVPQSLRSCG
Sbjct:    1 MIAFLGEIQPNILRKIQAPVIFYFLVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGHTLEKLPRKGGKRVPRLFVTSRMEIVPQSLRSCG 103
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BLAST of EMLSAG00000007745 vs. L. salmonis peptides
Match: EMLSAP00000004641 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2426:5738:7142:1 gene:EMLSAG00000004641 transcript:EMLSAT00000004641 description:"maker-LSalAtl2s2426-augustus-gene-0.3")

HSP 1 Score: 78.5666 bits (192), Expect = 1.622e-19
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 0 
Query:    1 MIAFLG-------EIQPNILRKIQAPVIF--YFLVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGHTLEKLPRKGGKRVPRLFVTSRM 92
            M AF+G       E   ++L+++   V+     LVSTPSF+ V KEGEV SFKTSTVAKSM+LKF+ GKKFEETTS+G T++ L    G   P  FV+ +M
Sbjct:    1 MEAFMGKYNRISSEKYEDLLKELGVNVLLRKAALVSTPSFE-VSKEGEVWSFKTSTVAKSMELKFEXGKKFEETTSDGRTVDTLVTLDG---PTTFVSEQM 97
[Close]
BLAST of EMLSAG00000007745 vs. L. salmonis peptides
Match: EMLSAP00000004244 (pep:novel supercontig:LSalAtl2s:LSalAtl2s222:241073:242209:-1 gene:EMLSAG00000004244 transcript:EMLSAT00000004244 description:"snap_masked-LSalAtl2s222-processed-gene-2.5")

HSP 1 Score: 71.633 bits (174), Expect = 2.873e-17
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0 
Query:   25 LVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGHTLEKLPRKGGKRVPRLFV 88
            LVSTPSF+ V KEG+V SFKTSTVAKSM+LKFKVGK+FEET S+G T++ L    G   P  FV
Sbjct:    7 LVSTPSFE-VSKEGKVSSFKTSTVAKSMELKFKVGKEFEETXSDGRTVDTLVTMDG---PTTFV 66
[Close]
BLAST of EMLSAG00000007745 vs. L. salmonis peptides
Match: EMLSAP00000001274 (pep:novel supercontig:LSalAtl2s:LSalAtl2s120:334020:334389:1 gene:EMLSAG00000001274 transcript:EMLSAT00000001274 description:"maker-LSalAtl2s120-snap-gene-3.2")

HSP 1 Score: 43.8986 bits (102), Expect = 2.775e-7
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 0 
Query:    4 FLGEIQPNILRKIQAPVIFYFLVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKK 61
             L E+  N L +I  PV    LVS  SF+ V KEGEV SFKT TVAKSM+LKF+V  K
Sbjct:    2 LLEELGVNDLFRI--PV----LVSNHSFE-VSKEGEVTSFKTYTVAKSMELKFEVKNK 52
[Close]
BLAST of EMLSAG00000007745 vs. nr
Match: gi|155966175|gb|ABU41042.1| (putative cellular retinoic acid/retinol binding protein [Lepeophtheirus salmonis] >gi|225713860|gb|ACO12776.1| Cellular retinoic acid-binding protein 2 [Lepeophtheirus salmonis] >gi|290463031|gb|ADD24563.1| Cellular retinoic acid-binding protein 2 [Lepeophtheirus salmonis] >gi|290561270|gb|ADD38037.1| Cellular retinoic acid-binding protein 2 [Lepeophtheirus salmonis])

HSP 1 Score: 80.4925 bits (197), Expect = 3.047e-17
Identity = 52/101 (51.49%), Postives = 67/101 (66.34%), Query Frame = 0 
Query:    1 MIAFLG-------EIQPNILRKIQAPVIF--YFLVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGHTLEKLPRKGGKRVPRLFVTSRM 92
            M AF+G       E   ++L+++   V+     LVSTPSF+ V KEGEV SFKTSTVAKSM+LKF+VGKKFEETTS+G T++ L    G   P  FV+ +M
Sbjct:    1 MEAFMGKYNRISSEKYEDLLKELGVNVLLRKAALVSTPSFE-VSKEGEVWSFKTSTVAKSMELKFEVGKKFEETTSDGRTVDTLVTLDG---PTTFVSEQM 97
[Close]
BLAST of EMLSAG00000007745 vs. nr
Match: gi|225712974|gb|ACO12333.1| (Cellular retinoic acid-binding protein 2 [Lepeophtheirus salmonis])

HSP 1 Score: 79.337 bits (194), Expect = 7.896e-17
Identity = 50/89 (56.18%), Postives = 61/89 (68.54%), Query Frame = 0 
Query:    4 FLGEIQPNILRKIQAPVIFYFLVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGHTLEKLPRKGGKRVPRLFVTSRM 92
             L E+  N+L +  A      LVSTPSF+ V KEGEV SFKTSTVAKSM+LKF+VGKKFEETTS+G T++ L    G   P  FV+ +M
Sbjct:   15 LLKELGVNVLLRKAA------LVSTPSFE-VSKEGEVWSFKTSTVAKSMELKFEVGKKFEETTSDGRTVDTLVTLDG---PTTFVSEQM 93
[Close]
BLAST of EMLSAG00000007745 vs. nr
Match: gi|225709644|gb|ACO10668.1| (Cellular retinoic acid-binding protein 2 [Caligus rogercresseyi])

HSP 1 Score: 74.3294 bits (181), Expect = 6.360e-15
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 0 
Query:    1 MIAFLG-------EIQPNILRKIQAPVIF--YFLVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGHTLEKL 75
            M AF+G       E   ++L+++   V+     LVSTP+F+ V KEGEV SFKTSTVAKSMKLKF+VGKKFEETTS+G  ++ L
Sbjct:    1 MEAFMGKYNRVKSENYEDLLKELGVNVLLRKAALVSTPTFE-VSKEGEVWSFKTSTVAKSMKLKFEVGKKFEETTSDGRLVDTL 83
[Close]
BLAST of EMLSAG00000007745 vs. nr
Match: gi|225718480|gb|ACO15086.1| (Cellular retinoic acid-binding protein 2 [Caligus clemensi])

HSP 1 Score: 74.3294 bits (181), Expect = 7.710e-15
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = 0 
Query:    1 MIAFLG-------EIQPNILRKIQAPVIF--YFLVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGHTLEKLPRKGGKRVPRLFVTSRM 92
            M AF+G       E   ++L+++   V+     LVSTPSF+ V KEGEV SFKTSTVAK M+LKF+VGKKFEETTS+G  ++ L    G   P  FV+ ++
Sbjct:    1 MDAFMGKYNRISSEKYEDLLKELGVNVLLRKAALVSTPSFE-VSKEGEVWSFKTSTVAKPMELKFEVGKKFEETTSDGRVVDTLVTLDG---PTTFVSEQI 97
[Close]
BLAST of EMLSAG00000007745 vs. nr
Match: gi|225710890|gb|ACO11291.1| (Cellular retinoic acid-binding protein 2 [Caligus rogercresseyi])

HSP 1 Score: 73.1738 bits (178), Expect = 2.134e-14
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 0 
Query:    1 MIAFLG-------EIQPNILRKIQAPVIF--YFLVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGHTLEKL 75
            M AF+G       E   ++L+++   V+     LVSTP+F+ V KEGEV SFKTSTVAKSM+LKF+VGKKFEETTS+G  ++ L
Sbjct:    1 MEAFMGKYNRVKSENYEDLLKELGVNVLLRKAALVSTPTFE-VSKEGEVWSFKTSTVAKSMELKFEVGKKFEETTSDGRLVDTL 83
[Close]
BLAST of EMLSAG00000007745 vs. nr
Match: gi|225710698|gb|ACO11195.1| (Cellular retinoic acid-binding protein 2 [Caligus rogercresseyi])

HSP 1 Score: 72.7886 bits (177), Expect = 2.736e-14
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 0 
Query:    1 MIAFLG-------EIQPNILRKIQAPVIF--YFLVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGHTLEKL 75
            M AF+G       E   ++L+++   V+     LVSTP+F+ V KEGEV SFKTST+AKSM+LKF+VGKKFEETTS+G  ++ L
Sbjct:    1 MEAFMGKYNRVKSENHEDLLKELGVNVLLRKAALVSTPTFE-VSKEGEVWSFKTSTMAKSMELKFEVGKKFEETTSDGRLVDTL 83
[Close]
BLAST of EMLSAG00000007745 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold747_size103044-snap-gene-0.14 (protein:Tk12097 transcript:maker-scaffold747_size103044-snap-gene-0.14-mRNA-1 annotation:"cellular retinoic acid-binding protein 2")

HSP 1 Score: 46.2098 bits (108), Expect = 7.179e-8
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 0 
Query:    2 IAFLGEIQ----PNILRKIQAPVIFYFL-----VSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGH 70
            ++F G+ Q     N    ++A  + Y L     VSTP+ +    +G V +FKTST  KSM+LKFK+G++F+ETT +G 
Sbjct:    1 MSFQGKYQRTSSDNYEEFLKALEVSYLLRKAATVSTPTLEVSEADG-VWTFKTSTTLKSMELKFKLGEEFDETTPDGR 77
[Close]
BLAST of EMLSAG00000007745 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold25_size650667-snap-gene-0.20 (protein:Tk06682 transcript:maker-scaffold25_size650667-snap-gene-0.20-mRNA-1 annotation:"cellular retinoic acid-binding protein 2")

HSP 1 Score: 46.2098 bits (108), Expect = 7.179e-8
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 0 
Query:    2 IAFLGEIQ----PNILRKIQAPVIFYFL-----VSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKKFEETTSEGH 70
            ++F G+ Q     N    ++A  + Y L     VSTP+ +    +G V +FKTST  KSM+LKFK+G++F+ETT +G 
Sbjct:    1 MSFQGKYQRTSSDNYEEFLKALEVSYLLRKAATVSTPTLEVSEADG-VWTFKTSTTLKSMELKFKLGEEFDETTPDGR 77
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007745 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007745 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 20
Match NameE-valueIdentityDescription
gi|592892391|gb|GAXK01065984.1|4.766e-743.28TSA: Calanus finmarchicus comp5093_c0_seq1 transcr... [more]
gi|592856316|gb|GAXK01101228.1|1.532e-543.28TSA: Calanus finmarchicus comp6189_c0_seq1 transcr... [more]
gi|592785878|gb|GAXK01168690.1|2.007e-540.91TSA: Calanus finmarchicus comp891_c0_seq1 transcri... [more]
gi|592926628|gb|GAXK01031820.1|3.296e-548.89TSA: Calanus finmarchicus comp20956_c2_seq1 transc... [more]
gi|592766264|gb|GAXK01188304.1|3.302e-544.07TSA: Calanus finmarchicus comp11284_c1_seq2 transc... [more]
gi|592766265|gb|GAXK01188303.1|4.198e-544.07TSA: Calanus finmarchicus comp11284_c1_seq1 transc... [more]
gi|592882875|gb|GAXK01075500.1|2.079e-444.44TSA: Calanus finmarchicus comp6348727_c0_seq1 tran... [more]
gi|592775866|gb|GAXK01178702.1|4.073e-433.33TSA: Calanus finmarchicus comp14576_c2_seq1 transc... [more]
gi|592775867|gb|GAXK01178701.1|4.944e-433.33TSA: Calanus finmarchicus comp14576_c1_seq1 transc... [more]
gi|592839066|gb|GAXK01118478.1|7.991e-341.30TSA: Calanus finmarchicus comp124765_c0_seq1 trans... [more]

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BLAST of EMLSAG00000007745 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000077454.407e-69100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s450:37056... [more]
EMLSAP000000046411.622e-1950.50pep:novel supercontig:LSalAtl2s:LSalAtl2s2426:5738... [more]
EMLSAP000000042442.873e-1765.63pep:novel supercontig:LSalAtl2s:LSalAtl2s222:24107... [more]
EMLSAP000000012742.775e-756.90pep:novel supercontig:LSalAtl2s:LSalAtl2s120:33402... [more]
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BLAST of EMLSAG00000007745 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007745 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007745 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 6
Match NameE-valueIdentityDescription
gi|155966175|gb|ABU41042.1|3.047e-1751.49putative cellular retinoic acid/retinol binding pr... [more]
gi|225712974|gb|ACO12333.1|7.896e-1756.18Cellular retinoic acid-binding protein 2 [Lepeopht... [more]
gi|225709644|gb|ACO10668.1|6.360e-1554.76Cellular retinoic acid-binding protein 2 [Caligus ... [more]
gi|225718480|gb|ACO15086.1|7.710e-1548.51Cellular retinoic acid-binding protein 2 [Caligus ... [more]
gi|225710890|gb|ACO11291.1|2.134e-1453.57Cellular retinoic acid-binding protein 2 [Caligus ... [more]
gi|225710698|gb|ACO11195.1|2.736e-1452.38Cellular retinoic acid-binding protein 2 [Caligus ... [more]
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BLAST of EMLSAG00000007745 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
maker-scaffold747_size103044-snap-gene-0.147.179e-839.74protein:Tk12097 transcript:maker-scaffold747_size1... [more]
maker-scaffold25_size650667-snap-gene-0.207.179e-839.74protein:Tk06682 transcript:maker-scaffold25_size65... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s450supercontigLSalAtl2s450:370568..370879 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s450-processed-gene-3.4
Biotypeprotein_coding
EvidenceIEA
Noteputative cellular retinoic acid/retinol binding protein [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007745 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007745EMLSAT00000007745-703592Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s450:370568..370879+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007745-690511 ID=EMLSAG00000007745-690511|Name=EMLSAG00000007745|organism=Lepeophtheirus salmonis|type=gene|length=312bp|location=Sequence derived from alignment at LSalAtl2s450:370568..370879+ (Lepeophtheirus salmonis)
ATGATAGCTTTTCTTGGGGAAATACAACCGAACATTCTCCGAAAAATACA
AGCACCTGTAATTTTTTACTTCCTTGTGTCGACTCCAAGCTTTAAAGGAG
TCGTAAAGGAGGGAGAAGTAAGGTCTTTCAAAACTTCTACGGTAGCCAAG
TCAATGAAATTGAAGTTCAAAGTCGGAAAGAAGTTTGAGGAAACTACTTC
TGAGGGTCATACATTGGAAAAATTGCCAAGAAAGGGCGGAAAAAGAGTAC
CAAGACTGTTTGTGACTTCAAGGATGGAAATTGTGCCTCAATCACTCAGG
TCATGTGGTTAA
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