EMLSAG00000008521, EMLSAG00000008521-691287 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000008521 vs. GO
Match: - (symbol:CoVa "Cytochrome c oxidase subunit Va" species:7227 "Drosophila melanogaster" [GO:0005751 "mitochondrial respiratory chain complex IV" evidence=ISS;NAS] [GO:0004129 "cytochrome-c oxidase activity" evidence=ISS;NAS] [GO:0005743 "mitochondrial inner membrane" evidence=NAS] [GO:0006123 "mitochondrial electron transport, cytochrome c to oxygen" evidence=ISS] [GO:0045787 "positive regulation of cell cycle" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005811 "lipid particle" evidence=IDA] InterPro:IPR003204 Pfam:PF02284 EMBL:AE014297 GO:GO:0005739 GO:GO:0005743 GO:GO:0005811 GO:GO:0046872 GO:GO:0055114 GO:GO:0004129 GO:GO:1902600 GO:GO:0045787 eggNOG:NOG284808 GeneTree:ENSGT00390000001424 KO:K02264 OrthoDB:EOG74J99R Gene3D:1.25.40.40 PANTHER:PTHR14200 SUPFAM:SSF48479 EMBL:Y09065 EMBL:BT011037 RefSeq:NP_001262488.1 RefSeq:NP_477217.1 RefSeq:NP_731641.1 UniGene:Dm.1158 ProteinModelPortal:Q94514 SMR:Q94514 BioGrid:66552 DIP:DIP-18939N IntAct:Q94514 MINT:MINT-746726 STRING:7227.FBpp0081947 PaxDb:Q94514 PRIDE:Q94514 EnsemblMetazoa:FBtr0082473 EnsemblMetazoa:FBtr0082474 GeneID:41432 KEGG:dme:Dmel_CG14724 CTD:41432 FlyBase:FBgn0019624 InParanoid:Q94514 OMA:REGIDGW PhylomeDB:Q94514 ChiTaRS:CoVa GenomeRNAi:41432 NextBio:823825 PRO:PR:Q94514 Bgee:Q94514 Uniprot:Q94514) HSP 1 Score: 46.2098 bits (108), Expect = 1.934e-6 Identity = 29/102 (28.43%), Postives = 44/102 (43.14%), Query Frame = 0 Query: 14 FFERPEIEGWEAQHGFNNLYVLDL---------------------------------CSTHEEIILPYVMHEIGPTMNKLGIYILEDTLGYHETELALVDSY 82 +F R I+GWE + G N+L +DL C + + PY++ +I PT+ +LGI +E+ LGY + ELAL Y Sbjct: 47 YFSREGIDGWEIRKGMNDLLGMDLVPSPKIIEAGLRASRRVNDIALAIRWLEGCKDKCGDQKATLYPYLLEKITPTLQELGIPTIEE-LGYDKPELALKSVY 147
BLAST of EMLSAG00000008521 vs. C. finmarchicus
Match: gi|592785344|gb|GAXK01169224.1| (TSA: Calanus finmarchicus comp308_c0_seq1 transcribed RNA sequence) HSP 1 Score: 61.2326 bits (147), Expect = 4.927e-12 Identity = 34/114 (29.82%), Postives = 54/114 (47.37%), Query Frame = 0 Query: 4 DADLKTKVIAFFERPEIEGWEAQHGFNNLYVLDL---------------------------------CSTHEEIILPYVMHEIGPTMNKLGIYILEDTLGYHETELALVDSYRI 84 DA+ + +A+F+R +I+GWE + G +L +D+ C E PY+M E+ PT+++LGI +E+ LGYH+ ELAL + Y I Sbjct: 149 DAEFDARYVAYFDRADIDGWEIRKGMADLCAMDMVPEPVIVASALRACRRINDYSLTTRILEIIKVKCGDKEAEFWPYIMQELKPTLDELGICSIEE-LGYHQPELALPNPYEI 487
BLAST of EMLSAG00000008521 vs. C. finmarchicus
Match: gi|592944050|gb|GAXK01014503.1| (TSA: Calanus finmarchicus comp8219_c0_seq1 transcribed RNA sequence) HSP 1 Score: 50.8322 bits (120), Expect = 4.116e-8 Identity = 31/112 (27.68%), Postives = 49/112 (43.75%), Query Frame = 0 Query: 4 DADLKTKVIAFFERPEIEGWEAQHGFNNLYVLDL---------------------------------CSTHEEIILPYVMHEIGPTMNKLGIYILEDTLGYHETELALVDSY 82 + D ++ I++F R +I+GWE + G +L +DL C E I PY++ E+ PT+++LGI LGY + ELAL + Y Sbjct: 183 NQDFDSRYISYFNRSDIDGWEIRKGMGDLAAMDLVPDPLIVAAALRACRRINDFSLTTRILEVVRIKCGDREAEIWPYMLQELSPTLSELGIPTPHH-LGYEQPELALPNPY 515
BLAST of EMLSAG00000008521 vs. C. finmarchicus
Match: gi|592840892|gb|GAXK01116652.1| (TSA: Calanus finmarchicus comp6655438_c0_seq1 transcribed RNA sequence) HSP 1 Score: 42.3578 bits (98), Expect = 1.132e-5 Identity = 24/92 (26.09%), Postives = 36/92 (39.13%), Query Frame = 0 Query: 4 DADLKTKVIAFFERPEIEGWEAQHGFNNLYVLDL---------------------------------CSTHEEIILPYVMHEIGPTMNKLGI 62 D++ + AFF R +I+GWE + N+L +DL C I PY++ EI PT+ +LGI Sbjct: 30 DSEFDARYKAFFNRKDIDGWECRKAMNDLSGMDLVPDPEIVIAALHACRRLNDYALATRFLETVKDKCGPRVNEIYPYILQEIRPTLTELGI 305
BLAST of EMLSAG00000008521 vs. C. finmarchicus
Match: gi|592764426|gb|GAXK01190142.1| (TSA: Calanus finmarchicus comp1727377_c0_seq2 transcribed RNA sequence) HSP 1 Score: 28.4906 bits (62), Expect = 3.220e+0 Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 0 Query: 39 STHEEIILPYVMHEIGPTMNKLGIYIL 65 S EE +LP + H+I P+ + GIY+L Sbjct: 624 SFEEEAMLPIIHHKIHPSYTQAGIYML 704
BLAST of EMLSAG00000008521 vs. C. finmarchicus
Match: gi|592764427|gb|GAXK01190141.1| (TSA: Calanus finmarchicus comp1727377_c0_seq1 transcribed RNA sequence) HSP 1 Score: 28.4906 bits (62), Expect = 3.234e+0 Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 0 Query: 39 STHEEIILPYVMHEIGPTMNKLGIYIL 65 S EE +LP + H+I P+ + GIY+L Sbjct: 624 SFEEEAMLPIIHHKIHPSYTQAGIYML 704
BLAST of EMLSAG00000008521 vs. L. salmonis peptides
Match: EMLSAP00000008521 (pep:novel supercontig:LSalAtl2s:LSalAtl2s5257:3307:3685:1 gene:EMLSAG00000008521 transcript:EMLSAT00000008521 description:"maker-LSalAtl2s5257-snap-gene-0.0") HSP 1 Score: 193.356 bits (490), Expect = 5.449e-65 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 Query: 1 KIYDADLKTKVIAFFERPEIEGWEAQHGFNNLYVLDLCSTHEEIILPYVMHEIGPTMNKLGIYILEDTLGYHETELALVDSYRISYLPHFKPH 93 KIYDADLKTKVIAFFERPEIEGWEAQHGFNNLYVLDLCSTHEEIILPYVMHEIGPTMNKLGIYILEDTLGYHETELALVDSYRISYLPHFKPH Sbjct: 1 KIYDADLKTKVIAFFERPEIEGWEAQHGFNNLYVLDLCSTHEEIILPYVMHEIGPTMNKLGIYILEDTLGYHETELALVDSYRISYLPHFKPH 93
BLAST of EMLSAG00000008521 vs. L. salmonis peptides
Match: EMLSAP00000002059 (pep:novel supercontig:LSalAtl2s:LSalAtl2s13774:293:743:1 gene:EMLSAG00000002059 transcript:EMLSAT00000002059 description:"maker-LSalAtl2s13774-snap-gene-0.0") HSP 1 Score: 164.081 bits (414), Expect = 9.164e-53 Identity = 86/121 (71.07%), Postives = 90/121 (74.38%), Query Frame = 0 Query: 1 KIYDADLKTKVIAFFERPEIEGWEAQHGFNN-------------------------LYVLDL---CSTHEEIILPYVMHEIGPTMNKLGIYILEDTLGYHETELALVDSYRISYLPHFKPH 93 KIYDADLKTKVIAFFERPEI+GWEAQHGFNN LY L+ CSTH+EIILPYVMHEIGPTMN+LGIYILEDTLGYHETELALVDSYRISYLP FKPH Sbjct: 25 KIYDADLKTKVIAFFERPEIDGWEAQHGFNNLYFLSYLLSLLGSRHDRRLNDFGLILYSLNTKMKCSTHKEIILPYVMHEIGPTMNELGIYILEDTLGYHETELALVDSYRISYLPQFKPH 145
BLAST of EMLSAG00000008521 vs. L. salmonis peptides
Match: EMLSAP00000011441 (pep:novel supercontig:LSalAtl2s:LSalAtl2s7907:325:676:-1 gene:EMLSAG00000011441 transcript:EMLSAT00000011441 description:"maker-LSalAtl2s7907-snap-gene-0.0") HSP 1 Score: 157.532 bits (397), Expect = 5.482e-51 Identity = 75/84 (89.29%), Postives = 81/84 (96.43%), Query Frame = 0 Query: 1 KIYDADLKTKVIAFFERPEIEGWEAQHGFNNLYVLDLCSTHEEIILPYVMHEIGPTMNKLGIYILEDTLGYHETELALVDSYRI 84 KIY+ADLK K IAFFERPEI+GWEAQHGFNNLYVL+LCSTH+EIILPYVMHEIGPTMN+LGIY+LE TLGYHETELALVDSYRI Sbjct: 1 KIYNADLKXKGIAFFERPEIDGWEAQHGFNNLYVLNLCSTHQEIILPYVMHEIGPTMNELGIYLLEYTLGYHETELALVDSYRI 84
BLAST of EMLSAG00000008521 vs. L. salmonis peptides
Match: EMLSAP00000008369 (pep:novel supercontig:LSalAtl2s:LSalAtl2s5114:504:1095:1 gene:EMLSAG00000008369 transcript:EMLSAT00000008369 description:"maker-LSalAtl2s5114-snap-gene-0.1") HSP 1 Score: 126.716 bits (317), Expect = 6.068e-38 Identity = 69/110 (62.73%), Postives = 73/110 (66.36%), Query Frame = 0 Query: 1 KIYDADLKTKVIAFFERPEIEGWEAQHGFNNLYVLDL--------------------------------CSTHEEIILPYVMHEIGPTMNKLGIYILEDTLGYHETELAL 78 KIY+ DLKTK IAFFERPEI+GWEAQHGF NLYVLDL CSTHEEIILPYVMHEIGPTMN+LGIY+LE TLGYHETE AL Sbjct: 1 KIYNXDLKTKGIAFFERPEIDGWEAQHGFYNLYVLDLVPXLPIIIAWLKACRRLNDIGLILYSLNHKMKCSTHEEIILPYVMHEIGPTMNELGIYLLEYTLGYHETEFAL 110 HSP 2 Score: 44.2838 bits (103), Expect = 3.855e-7 Identity = 21/34 (61.76%), Postives = 23/34 (67.65%), Query Frame = 0 Query: 4 DADLKTKVIAFFERPEIEGWEAQHGFNNLYVLDL 37 L+ K FER EI+ WEAQHGF NLYVLDL Sbjct: 120 QCRLEDKSHRLFERSEIDRWEAQHGFYNLYVLDL 153
BLAST of EMLSAG00000008521 vs. L. salmonis peptides
Match: EMLSAP00000005228 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2773:12242:12499:-1 gene:EMLSAG00000005228 transcript:EMLSAT00000005228 description:"snap_masked-LSalAtl2s2773-processed-gene-0.0") HSP 1 Score: 72.7886 bits (177), Expect = 5.954e-18 Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 0 Query: 1 KIYDADLKTKVIAFFERPEIEGWEAQHGFNNLYVLDLCSTHEEIILPYVMHEIGPTMNKLGI 62 KIYD DLKTK IAFF+RPEI+GWEAQHGF NLYVLDL E+++ + +N G+ Sbjct: 1 KIYDTDLKTKGIAFFKRPEIDGWEAQHGFTNLYVLDLV---HELLINIAGFKTCKRLNDFGL 59
BLAST of EMLSAG00000008521 vs. L. salmonis peptides
Match: EMLSAP00000007434 (pep:novel supercontig:LSalAtl2s:LSalAtl2s423:326532:328019:-1 gene:EMLSAG00000007434 transcript:EMLSAT00000007434 description:"maker-LSalAtl2s423-snap-gene-2.10") HSP 1 Score: 70.0922 bits (170), Expect = 6.196e-17 Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 0 Query: 1 KIYDADLKTKVIAFFERPEIEGWEAQHGFNNLYVLDLC 38 +IYDAD +TKVIAFFERPE++GWEA+ GFNNLY LDL Sbjct: 35 EIYDADFETKVIAFFERPELDGWEARQGFNNLYALDLV 72
BLAST of EMLSAG00000008521 vs. L. salmonis peptides
Match: EMLSAP00000001024 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11700:750:1149:1 gene:EMLSAG00000001024 transcript:EMLSAT00000001024 description:"maker-LSalAtl2s11700-snap-gene-0.0") HSP 1 Score: 68.5514 bits (166), Expect = 4.680e-16 Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 0 Query: 1 KIYDADLKTKVIAFFERPEIEGWEAQHGFNNLYVLDL 37 KIY+ADLKTK IAFFERPEI+GWEAQ+GF NLYVLDL Sbjct: 47 KIYNADLKTKGIAFFERPEIDGWEAQYGFYNLYVLDL 83
BLAST of EMLSAG00000008521 vs. L. salmonis peptides
Match: EMLSAP00000008325 (pep:novel supercontig:LSalAtl2s:LSalAtl2s505:283197:283737:-1 gene:EMLSAG00000008325 transcript:EMLSAT00000008325 description:"snap-LSalAtl2s505-processed-gene-2.41") HSP 1 Score: 48.1358 bits (113), Expect = 7.933e-9 Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 0 Query: 16 ERPEIEGWEAQHGFNNLYVLDLCSTHEEIILPYVMHEIGPTMNKLGIYILEDTLGYHETEL 76 +RPEI+GWEAQHGFNNLYVLD HE LP ++ + ++ D+L H+ E+ Sbjct: 6 QRPEIDGWEAQHGFNNLYVLDF--IHE---LPIIIAGLKACRRSNDFGLIFDSLN-HQNEV 60
BLAST of EMLSAG00000008521 vs. nr
Match: gi|225712378|gb|ACO12035.1| (Cytochrome c oxidase subunit 5A, mitochondrial precursor [Lepeophtheirus salmonis]) HSP 1 Score: 119.398 bits (298), Expect = 1.127e-32 Identity = 63/117 (53.85%), Postives = 72/117 (61.54%), Query Frame = 0 Query: 1 KIYDADLKTKVIAFFERPEIEGWEAQHGFNNLYVLDL---------------------------------CSTHEEIILPYVMHEIGPTMNKLGIYILEDTLGYHETELALVDSYRI 84 +IYDAD +TKVIAFFERPE++GWEA+ GFNNLY LDL CSTHEE+I PY+M EIGPTM +LGI LE+ LGYHE ELAL D YRI Sbjct: 35 EIYDADFETKVIAFFERPELDGWEARQGFNNLYALDLVPEPPIIIAGLKACRRLNDFGLAIRFLEATKMKCSTHEEVIWPYIMQEIGPTMKELGISTLEE-LGYHEPELALADPYRI 150
BLAST of EMLSAG00000008521 vs. nr
Match: gi|225714018|gb|ACO12855.1| (Cytochrome c oxidase subunit 5A, mitochondrial precursor [Lepeophtheirus salmonis] >gi|290561831|gb|ADD38313.1| Cytochrome c oxidase subunit 5A, mitochondrial [Lepeophtheirus salmonis]) HSP 1 Score: 119.013 bits (297), Expect = 1.706e-32 Identity = 63/117 (53.85%), Postives = 72/117 (61.54%), Query Frame = 0 Query: 1 KIYDADLKTKVIAFFERPEIEGWEAQHGFNNLYVLDL---------------------------------CSTHEEIILPYVMHEIGPTMNKLGIYILEDTLGYHETELALVDSYRI 84 +IYDAD +TKVIAFFERPE++GWEA+ GFNNLY LDL CSTHEE+I PY+M EIGPTM +LGI LE+ LGYHE ELAL D YRI Sbjct: 35 EIYDADFETKVIAFFERPELDGWEARQGFNNLYALDLVPEPPIIIAGLKACRRLNDFGLAIRFLEATKMKCSTHEEVIWPYIMQEIGPTMKELGISTLEE-LGYHEPELALADPYRI 150
BLAST of EMLSAG00000008521 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold91_size383040-snap-gene-1.26 (protein:Tk03178 transcript:maker-scaffold91_size383040-snap-gene-1.26-mRNA-1 annotation:"cytochrome c oxidase subunit mitochondrial") HSP 1 Score: 52.7582 bits (125), Expect = 1.809e-10 Identity = 33/114 (28.95%), Postives = 51/114 (44.74%), Query Frame = 0 Query: 4 DADLKTKVIAFFERPEIEGWEAQHGFNNLYVLDL---------------------------------CSTHEEIILPYVMHEIGPTMNKLGIYILEDTLGYHETELALVDSYRI 84 DA+ + AFF R +I+GWE + +L +DL C + E I PY++ E+ PTM++LGI + + +GY + ELAL + Y I Sbjct: 28 DAEFDARYEAFFNRKDIDGWEIRKAMGDLGGMDLIPEPAIVAAALRACRRVNDYSLTTRILELVRFKCGSRIEEIWPYMIQELKPTMDELGITAISE-MGYEKPELALPNPYEI 140 The following BLAST results are available for this feature:
BLAST of EMLSAG00000008521 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 1
BLAST of EMLSAG00000008521 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 5
BLAST of EMLSAG00000008521 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 8
BLAST of EMLSAG00000008521 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000008521 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000008521 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 2
BLAST of EMLSAG00000008521 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s5257:3307..3685+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000008521-691287 ID=EMLSAG00000008521-691287|Name=EMLSAG00000008521|organism=Lepeophtheirus salmonis|type=gene|length=379bp|location=Sequence derived from alignment at LSalAtl2s5257:3307..3685+ (Lepeophtheirus salmonis)back to top Add to Basket
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