EMLSAG00000011441, EMLSAG00000011441-694207 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000011441
Unique NameEMLSAG00000011441-694207
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000011441 vs. C. finmarchicus
Match: gi|592785344|gb|GAXK01169224.1| (TSA: Calanus finmarchicus comp308_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 59.3066 bits (142), Expect = 2.062e-11
Identity = 33/114 (28.95%), Postives = 53/114 (46.49%), Query Frame = 0 
Query:    4 NADLKXKGIAFFERPEIDGWEAQHGFNNLYVLNL---------------------------------CSTHQEIILPYVMHEIGPTMNELGIYLLEYTLGYHETELALVDSYRI 84
            +A+   + +A+F+R +IDGWE + G  +L  +++                                 C   +    PY+M E+ PT++ELGI  +E  LGYH+ ELAL + Y I
Sbjct:  149 DAEFDARYVAYFDRADIDGWEIRKGMADLCAMDMVPEPVIVASALRACRRINDYSLTTRILEIIKVKCGDKEAEFWPYIMQELKPTLDELGICSIE-ELGYHQPELALPNPYEI 487
[Close]
BLAST of EMLSAG00000011441 vs. C. finmarchicus
Match: gi|592944050|gb|GAXK01014503.1| (TSA: Calanus finmarchicus comp8219_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 53.5286 bits (127), Expect = 3.344e-9
Identity = 32/112 (28.57%), Postives = 49/112 (43.75%), Query Frame = 0 
Query:    4 NADLKXKGIAFFERPEIDGWEAQHGFNNLYVLNL---------------------------------CSTHQEIILPYVMHEIGPTMNELGIYLLEYTLGYHETELALVDSY 82
            N D   + I++F R +IDGWE + G  +L  ++L                                 C   +  I PY++ E+ PT++ELGI    + LGY + ELAL + Y
Sbjct:  183 NQDFDSRYISYFNRSDIDGWEIRKGMGDLAAMDLVPDPLIVAAALRACRRINDFSLTTRILEVVRIKCGDREAEIWPYMLQELSPTLSELGIPTPHH-LGYEQPELALPNPY 515
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BLAST of EMLSAG00000011441 vs. C. finmarchicus
Match: gi|592840892|gb|GAXK01116652.1| (TSA: Calanus finmarchicus comp6655438_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.9726 bits (97), Expect = 1.512e-5
Identity = 24/83 (28.92%), Postives = 32/83 (38.55%), Query Frame = 0 
Query:   13 AFFERPEIDGWEAQHGFNNLYVLNL---------------------------------CSTHQEIILPYVMHEIGPTMNELGI 62
            AFF R +IDGWE +   N+L  ++L                                 C      I PY++ EI PT+ ELGI
Sbjct:   57 AFFNRKDIDGWECRKAMNDLSGMDLVPDPEIVIAALHACRRLNDYALATRFLETVKDKCGPRVNEIYPYILQEIRPTLTELGI 305
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BLAST of EMLSAG00000011441 vs. C. finmarchicus
Match: gi|592764426|gb|GAXK01190142.1| (TSA: Calanus finmarchicus comp1727377_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 2.404e+0
Identity = 11/27 (40.74%), Postives = 18/27 (66.67%), Query Frame = 0 
Query:   39 STHQEIILPYVMHEIGPTMNELGIYLL 65
            S  +E +LP + H+I P+  + GIY+L
Sbjct:  624 SFEEEAMLPIIHHKIHPSYTQAGIYML 704
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BLAST of EMLSAG00000011441 vs. C. finmarchicus
Match: gi|592764427|gb|GAXK01190141.1| (TSA: Calanus finmarchicus comp1727377_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 2.414e+0
Identity = 11/27 (40.74%), Postives = 18/27 (66.67%), Query Frame = 0 
Query:   39 STHQEIILPYVMHEIGPTMNELGIYLL 65
            S  +E +LP + H+I P+  + GIY+L
Sbjct:  624 SFEEEAMLPIIHHKIHPSYTQAGIYML 704
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BLAST of EMLSAG00000011441 vs. L. salmonis peptides
Match: EMLSAP00000011441 (pep:novel supercontig:LSalAtl2s:LSalAtl2s7907:325:676:-1 gene:EMLSAG00000011441 transcript:EMLSAT00000011441 description:"maker-LSalAtl2s7907-snap-gene-0.0")

HSP 1 Score: 172.555 bits (436), Expect = 4.443e-57
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 
Query:    1 KIYNADLKXKGIAFFERPEIDGWEAQHGFNNLYVLNLCSTHQEIILPYVMHEIGPTMNELGIYLLEYTLGYHETELALVDSYRI 84
            KIYNADLKXKGIAFFERPEIDGWEAQHGFNNLYVLNLCSTHQEIILPYVMHEIGPTMNELGIYLLEYTLGYHETELALVDSYRI
Sbjct:    1 KIYNADLKXKGIAFFERPEIDGWEAQHGFNNLYVLNLCSTHQEIILPYVMHEIGPTMNELGIYLLEYTLGYHETELALVDSYRI 84
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BLAST of EMLSAG00000011441 vs. L. salmonis peptides
Match: EMLSAP00000008521 (pep:novel supercontig:LSalAtl2s:LSalAtl2s5257:3307:3685:1 gene:EMLSAG00000008521 transcript:EMLSAT00000008521 description:"maker-LSalAtl2s5257-snap-gene-0.0")

HSP 1 Score: 157.532 bits (397), Expect = 4.951e-51
Identity = 75/84 (89.29%), Postives = 81/84 (96.43%), Query Frame = 0 
Query:    1 KIYNADLKXKGIAFFERPEIDGWEAQHGFNNLYVLNLCSTHQEIILPYVMHEIGPTMNELGIYLLEYTLGYHETELALVDSYRI 84
            KIY+ADLK K IAFFERPEI+GWEAQHGFNNLYVL+LCSTH+EIILPYVMHEIGPTMN+LGIY+LE TLGYHETELALVDSYRI
Sbjct:    1 KIYDADLKTKVIAFFERPEIEGWEAQHGFNNLYVLDLCSTHEEIILPYVMHEIGPTMNKLGIYILEDTLGYHETELALVDSYRI 84
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BLAST of EMLSAG00000011441 vs. L. salmonis peptides
Match: EMLSAP00000002059 (pep:novel supercontig:LSalAtl2s:LSalAtl2s13774:293:743:1 gene:EMLSAG00000002059 transcript:EMLSAT00000002059 description:"maker-LSalAtl2s13774-snap-gene-0.0")

HSP 1 Score: 140.584 bits (353), Expect = 1.072e-43
Identity = 76/112 (67.86%), Postives = 79/112 (70.54%), Query Frame = 0 
Query:    1 KIYNADLKXKGIAFFERPEIDGWEAQHGFNN-------------------------LYVLNL---CSTHQEIILPYVMHEIGPTMNELGIYLLEYTLGYHETELALVDSYRI 84
            KIY+ADLK K IAFFERPEIDGWEAQHGFNN                         LY LN    CSTH+EIILPYVMHEIGPTMNELGIY+LE TLGYHETELALVDSYRI
Sbjct:   25 KIYDADLKTKVIAFFERPEIDGWEAQHGFNNLYFLSYLLSLLGSRHDRRLNDFGLILYSLNTKMKCSTHKEIILPYVMHEIGPTMNELGIYILEDTLGYHETELALVDSYRI 136
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BLAST of EMLSAG00000011441 vs. L. salmonis peptides
Match: EMLSAP00000008369 (pep:novel supercontig:LSalAtl2s:LSalAtl2s5114:504:1095:1 gene:EMLSAG00000008369 transcript:EMLSAT00000008369 description:"maker-LSalAtl2s5114-snap-gene-0.1")

HSP 1 Score: 135.191 bits (339), Expect = 2.332e-41
Identity = 72/110 (65.45%), Postives = 74/110 (67.27%), Query Frame = 0 
Query:    1 KIYNADLKXKGIAFFERPEIDGWEAQHGFNNLYVLNL--------------------------------CSTHQEIILPYVMHEIGPTMNELGIYLLEYTLGYHETELAL 78
            KIYN DLK KGIAFFERPEIDGWEAQHGF NLYVL+L                                CSTH+EIILPYVMHEIGPTMNELGIYLLEYTLGYHETE AL
Sbjct:    1 KIYNXDLKTKGIAFFERPEIDGWEAQHGFYNLYVLDLVPXLPIIIAWLKACRRLNDIGLILYSLNHKMKCSTHEEIILPYVMHEIGPTMNELGIYLLEYTLGYHETEFAL 110

HSP 2 Score: 45.0542 bits (105), Expect = 1.570e-7
Identity = 21/34 (61.76%), Postives = 23/34 (67.65%), Query Frame = 0 
Query:    4 NADLKXKGIAFFERPEIDGWEAQHGFNNLYVLNL 37
               L+ K    FER EID WEAQHGF NLYVL+L
Sbjct:  120 QCRLEDKSHRLFERSEIDRWEAQHGFYNLYVLDL 153
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BLAST of EMLSAG00000011441 vs. L. salmonis peptides
Match: EMLSAP00000005228 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2773:12242:12499:-1 gene:EMLSAG00000005228 transcript:EMLSAT00000005228 description:"snap_masked-LSalAtl2s2773-processed-gene-0.0")

HSP 1 Score: 73.1738 bits (178), Expect = 3.260e-18
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 0 
Query:    1 KIYNADLKXKGIAFFERPEIDGWEAQHGFNNLYVLNLCSTHQEIILPYVMHEIGPTMNELGIYLLEYTLGYHETEL 76
            KIY+ DLK KGIAFF+RPEIDGWEAQHGF NLYVL+L     E+++     +    +N+ G+    +    H+ E+
Sbjct:    1 KIYDTDLKTKGIAFFKRPEIDGWEAQHGFTNLYVLDLV---HELLINIAGFKTCKRLNDFGLIFDSFN---HQNEV 70
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BLAST of EMLSAG00000011441 vs. L. salmonis peptides
Match: EMLSAP00000001024 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11700:750:1149:1 gene:EMLSAG00000001024 transcript:EMLSAT00000001024 description:"maker-LSalAtl2s11700-snap-gene-0.0")

HSP 1 Score: 71.633 bits (174), Expect = 2.857e-17
Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = 0 
Query:    1 KIYNADLKXKGIAFFERPEIDGWEAQHGFNNLYVLNLCSTHQEIILPYVMHEIGPTMNELGIYLLEYTLGYHETEL 76
            KIYNADLK KGIAFFERPEIDGWEAQ+GF NLYVL+L        LP ++  +        I L+ Y+L  H+ E+
Sbjct:   47 KIYNADLKTKGIAFFERPEIDGWEAQYGFYNLYVLDLVPG-----LPIIIAWLKACRRLNDIGLILYSLN-HQNEV 116
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BLAST of EMLSAG00000011441 vs. L. salmonis peptides
Match: EMLSAP00000007434 (pep:novel supercontig:LSalAtl2s:LSalAtl2s423:326532:328019:-1 gene:EMLSAG00000007434 transcript:EMLSAT00000007434 description:"maker-LSalAtl2s423-snap-gene-2.10")

HSP 1 Score: 63.929 bits (154), Expect = 1.236e-14
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 0 
Query:    1 KIYNADLKXKGIAFFERPEIDGWEAQHGFNNLYVLNLC 38
            +IY+AD + K IAFFERPE+DGWEA+ GFNNLY L+L 
Sbjct:   35 EIYDADFETKVIAFFERPELDGWEARQGFNNLYALDLV 72
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BLAST of EMLSAG00000011441 vs. L. salmonis peptides
Match: EMLSAP00000008325 (pep:novel supercontig:LSalAtl2s:LSalAtl2s505:283197:283737:-1 gene:EMLSAG00000008325 transcript:EMLSAT00000008325 description:"snap-LSalAtl2s505-processed-gene-2.41")

HSP 1 Score: 47.3654 bits (111), Expect = 1.142e-8
Identity = 19/22 (86.36%), Postives = 21/22 (95.45%), Query Frame = 0 
Query:   16 ERPEIDGWEAQHGFNNLYVLNL 37
            +RPEIDGWEAQHGFNNLYVL+ 
Sbjct:    6 QRPEIDGWEAQHGFNNLYVLDF 27
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BLAST of EMLSAG00000011441 vs. Select Arthropod Genomes
Match: EFX75741.1 (hypothetical protein DAPPUDRAFT_55751 [Daphnia pulex])

HSP 1 Score: 50.8322 bits (120), Expect = 5.844e-9
Identity = 33/102 (32.35%), Postives = 44/102 (43.14%), Query Frame = 0 
Query:   13 AFFERPEIDGWEAQHGFNNLY-------------VLNLCSTHQEIIL-------------------PYVMHEIGPTMNELGIYLLEYTLGYHETELALVDSY 82
            +FF R +IDGWE +   N+L               LN C    +I L                   PY++ EI PT+N+LG+   E  LGY + ELAL   Y
Sbjct:   18 SFFNRKDIDGWECRKAMNDLSGMDLVPEPRIVIAALNACRRLNDIALAIRFLETVKDKCGGKAEIYPYILQEIRPTLNQLGLSTPE-ELGYDKPELALKSVY 118
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BLAST of EMLSAG00000011441 vs. nr
Match: gi|225712378|gb|ACO12035.1| (Cytochrome c oxidase subunit 5A, mitochondrial precursor [Lepeophtheirus salmonis])

HSP 1 Score: 113.235 bits (282), Expect = 2.853e-30
Identity = 60/117 (51.28%), Postives = 69/117 (58.97%), Query Frame = 0 
Query:    1 KIYNADLKXKGIAFFERPEIDGWEAQHGFNNLYVLNL---------------------------------CSTHQEIILPYVMHEIGPTMNELGIYLLEYTLGYHETELALVDSYRI 84
            +IY+AD + K IAFFERPE+DGWEA+ GFNNLY L+L                                 CSTH+E+I PY+M EIGPTM ELGI  LE  LGYHE ELAL D YRI
Sbjct:   35 EIYDADFETKVIAFFERPELDGWEARQGFNNLYALDLVPEPPIIIAGLKACRRLNDFGLAIRFLEATKMKCSTHEEVIWPYIMQEIGPTMKELGISTLE-ELGYHEPELALADPYRI 150
[Close]
BLAST of EMLSAG00000011441 vs. nr
Match: gi|225714018|gb|ACO12855.1| (Cytochrome c oxidase subunit 5A, mitochondrial precursor [Lepeophtheirus salmonis] >gi|290561831|gb|ADD38313.1| Cytochrome c oxidase subunit 5A, mitochondrial [Lepeophtheirus salmonis])

HSP 1 Score: 112.849 bits (281), Expect = 3.831e-30
Identity = 60/117 (51.28%), Postives = 69/117 (58.97%), Query Frame = 0 
Query:    1 KIYNADLKXKGIAFFERPEIDGWEAQHGFNNLYVLNL---------------------------------CSTHQEIILPYVMHEIGPTMNELGIYLLEYTLGYHETELALVDSYRI 84
            +IY+AD + K IAFFERPE+DGWEA+ GFNNLY L+L                                 CSTH+E+I PY+M EIGPTM ELGI  LE  LGYHE ELAL D YRI
Sbjct:   35 EIYDADFETKVIAFFERPELDGWEARQGFNNLYALDLVPEPPIIIAGLKACRRLNDFGLAIRFLEATKMKCSTHEEVIWPYIMQEIGPTMKELGISTLE-ELGYHEPELALADPYRI 150
[Close]
BLAST of EMLSAG00000011441 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold91_size383040-snap-gene-1.26 (protein:Tk03178 transcript:maker-scaffold91_size383040-snap-gene-1.26-mRNA-1 annotation:"cytochrome c oxidase subunit mitochondrial")

HSP 1 Score: 51.6026 bits (122), Expect = 4.375e-10
Identity = 33/114 (28.95%), Postives = 50/114 (43.86%), Query Frame = 0 
Query:    4 NADLKXKGIAFFERPEIDGWEAQHGFNNLYVLNL---------------------------------CSTHQEIILPYVMHEIGPTMNELGIYLLEYTLGYHETELALVDSYRI 84
            +A+   +  AFF R +IDGWE +    +L  ++L                                 C +  E I PY++ E+ PTM+ELGI  +   +GY + ELAL + Y I
Sbjct:   28 DAEFDARYEAFFNRKDIDGWEIRKAMGDLGGMDLIPEPAIVAAALRACRRVNDYSLTTRILELVRFKCGSRIEEIWPYMIQELKPTMDELGITAIS-EMGYEKPELALPNPYEI 140
The following BLAST results are available for this feature:
BLAST of EMLSAG00000011441 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011441 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592785344|gb|GAXK01169224.1|2.062e-1128.95TSA: Calanus finmarchicus comp308_c0_seq1 transcri... [more]
gi|592944050|gb|GAXK01014503.1|3.344e-928.57TSA: Calanus finmarchicus comp8219_c0_seq1 transcr... [more]
gi|592840892|gb|GAXK01116652.1|1.512e-528.92TSA: Calanus finmarchicus comp6655438_c0_seq1 tran... [more]
gi|592764426|gb|GAXK01190142.1|2.404e+040.74TSA: Calanus finmarchicus comp1727377_c0_seq2 tran... [more]
gi|592764427|gb|GAXK01190141.1|2.414e+040.74TSA: Calanus finmarchicus comp1727377_c0_seq1 tran... [more]
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BLAST of EMLSAG00000011441 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 8
Match NameE-valueIdentityDescription
EMLSAP000000114414.443e-57100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s7907:325:... [more]
EMLSAP000000085214.951e-5189.29pep:novel supercontig:LSalAtl2s:LSalAtl2s5257:3307... [more]
EMLSAP000000020591.072e-4367.86pep:novel supercontig:LSalAtl2s:LSalAtl2s13774:293... [more]
EMLSAP000000083692.332e-4165.45pep:novel supercontig:LSalAtl2s:LSalAtl2s5114:504:... [more]
EMLSAP000000052283.260e-1847.37pep:novel supercontig:LSalAtl2s:LSalAtl2s2773:1224... [more]
EMLSAP000000010242.857e-1753.95pep:novel supercontig:LSalAtl2s:LSalAtl2s11700:750... [more]
EMLSAP000000074341.236e-1468.42pep:novel supercontig:LSalAtl2s:LSalAtl2s423:32653... [more]
EMLSAP000000083251.142e-886.36pep:novel supercontig:LSalAtl2s:LSalAtl2s505:28319... [more]
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BLAST of EMLSAG00000011441 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011441 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 1
Match NameE-valueIdentityDescription
EFX75741.15.844e-932.35hypothetical protein DAPPUDRAFT_55751 [Daphnia pul... [more]
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BLAST of EMLSAG00000011441 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 2
Match NameE-valueIdentityDescription
gi|225712378|gb|ACO12035.1|2.853e-3051.28Cytochrome c oxidase subunit 5A, mitochondrial pre... [more]
gi|225714018|gb|ACO12855.1|3.831e-3051.28Cytochrome c oxidase subunit 5A, mitochondrial pre... [more]
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BLAST of EMLSAG00000011441 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold91_size383040-snap-gene-1.264.375e-1028.95protein:Tk03178 transcript:maker-scaffold91_size38... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s7907supercontigLSalAtl2s7907:325..676 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s7907-snap-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteCytochrome c oxidase subunit 5A, mitochondrial precursor [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000011441 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000011441EMLSAT00000011441-707288Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s7907:325..676-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000011441-694207 ID=EMLSAG00000011441-694207|Name=EMLSAG00000011441|organism=Lepeophtheirus salmonis|type=gene|length=352bp|location=Sequence derived from alignment at LSalAtl2s7907:325..676- (Lepeophtheirus salmonis)
AAAATCTACAATGCAGACTTGAAGAYAAAAGGCATCGCCTTTTTTGAACG
CCCTGAAATAGACGGATGGGAGGCCCAACATGGATTTAACAACCTCTACG
TTCTAAATTTAGTTCCTGAGCKACCTATTATCATTGCTTGGCTCACGGCA
TGCAGGAGATTAAACGATTTTGGATTGATATTTTATTCCTTGAACCACCA
AAATGAAGTGTTCCACTCACCAAGAGATCATTTTGCCTTACGTCATGCAT
GAAATTGGTCCAACCATGAACGAACTCGGTATTTACCTCCTAGAATATAC
CCTGGGATATCATGAGACTGAACTTGCATTGGTTGATTCTTATAGAATTT
AA
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