EMLSAG00000008637, EMLSAG00000008637-691403 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000008637 vs. C. finmarchicus
Match: gi|592786001|gb|GAXK01168567.1| (TSA: Calanus finmarchicus comp466_c0_seq1 transcribed RNA sequence) HSP 1 Score: 48.9062 bits (115), Expect = 6.297e-8 Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 0 Query: 1 MPKEYGLTQTMKLSNEFANVVGKKEA---FRPKFIKFV---LKKHNLQDPEKKQYFNPVKKM 56 MPK GLT+ + LS E A+++G K+ RP+ +K + LK+ LQDPE KQ+F P KM Sbjct: 248 MPKGSGLTKPLNLSKELADLIGAKKDEKLSRPEVVKRIWAYLKEKKLQDPENKQFFTPDAKM 433
BLAST of EMLSAG00000008637 vs. C. finmarchicus
Match: gi|592922191|gb|GAXK01036198.1| (TSA: Calanus finmarchicus comp109093_c0_seq1 transcribed RNA sequence) HSP 1 Score: 46.9802 bits (110), Expect = 4.203e-7 Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 0 Query: 1 MPKEYGLTQTMKLSNEFANVVGKKEA---FRPKFIKFV---LKKHNLQDPEKKQYFNPVKKM 56 MPK GLT+ +KLS E +VG K+ RP+ +K + +K+ LQDPE KQ+F P K M Sbjct: 50 MPKGSGLTKPLKLSAELGALVGAKKDEKLSRPEVVKRLWAYIKEKKLQDPENKQFFKPDKTM 235
BLAST of EMLSAG00000008637 vs. C. finmarchicus
Match: gi|592778896|gb|GAXK01175672.1| (TSA: Calanus finmarchicus comp3690_c0_seq1 transcribed RNA sequence) HSP 1 Score: 44.669 bits (104), Expect = 2.479e-6 Identity = 24/61 (39.34%), Postives = 37/61 (60.66%), Query Frame = 0 Query: 2 PKEYGLTQTMKLSNEFANVVGK---KEAFRPKFIKFV---LKKHNLQDPEKKQYFNPVKKM 56 PK+ G+ + +S+ A ++G ++ RP+ IK + LK+ NLQDPE KQ+F P K M Sbjct: 244 PKKTGIQAPLDISDALAKIIGTDKGEQVSRPQVIKKLWAYLKEKNLQDPEMKQWFTPDKTM 426
BLAST of EMLSAG00000008637 vs. C. finmarchicus
Match: gi|592766714|gb|GAXK01187854.1| (TSA: Calanus finmarchicus comp10534_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.5798 bits (83), Expect = 1.317e-3 Identity = 20/63 (31.75%), Postives = 36/63 (57.14%), Query Frame = 0 Query: 1 MPKEYGLTQTMKLSNEFANVVG---KKEAFRPKFIKFV---LKKHNLQDPEKKQYFNPVKKMV 57 +P + G+ + + LS A+++G ++ RP+ +K + +K L+DPE KQ+F P KM Sbjct: 197 IPAKTGIKKPLGLSPALADILGVSKDEKMSRPQVVKGLWAYIKDKELKDPENKQFFTPDAKMA 385
BLAST of EMLSAG00000008637 vs. C. finmarchicus
Match: gi|592766713|gb|GAXK01187855.1| (TSA: Calanus finmarchicus comp10534_c0_seq2 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 1.294e-2 Identity = 24/68 (35.29%), Postives = 39/68 (57.35%), Query Frame = 0 Query: 1 MPKEYGLTQTMKLSNEFANVVG---KKEAFRPKFIKFV---LKKHNLQDPEKKQYFNPVKKMV-IFPK 61 M K+ GL + + LS A+++G +++ R + +K + +K L+DPE KQ+F P KM IF K Sbjct: 182 MVKKTGLNKPLGLSPALADIMGCSKEEKRSRTQVVKGLWAYIKDKELKDPENKQFFTPDAKMAKIFGK 385
BLAST of EMLSAG00000008637 vs. C. finmarchicus
Match: gi|592779230|gb|GAXK01175338.1| (TSA: Calanus finmarchicus comp3748_c0_seq1 transcribed RNA sequence) HSP 1 Score: 34.6538 bits (78), Expect = 1.733e-2 Identity = 20/46 (43.48%), Postives = 31/46 (67.39%), Query Frame = 0 Query: 6 GLTQTMKLSNEFANVVGKKEAFRPKFIKFV---LKKHNLQDPEKKQ 48 G T +KLS E A++VG +E R + +K + +K++NLQDP+ KQ Sbjct: 621 GYTAPVKLSAELADIVGGEEMPRHEVVKRMWAYIKENNLQDPKNKQ 758
BLAST of EMLSAG00000008637 vs. C. finmarchicus
Match: gi|592857403|gb|GAXK01100159.1| (TSA: Calanus finmarchicus comp7447_c8_seq7 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 1.138e-1 Identity = 16/43 (37.21%), Postives = 22/43 (51.16%), Query Frame = 0 Query: 12 KLSNEFANVVGKKEAFRPKFIKFV---LKKHNLQDPEKKQYFN 51 KL A ++G RP I + +K H LQDP +K+Y N Sbjct: 637 KLDQRLARLLGVHTQTRPVIISALWQYIKTHKLQDPHEKEYVN 765
BLAST of EMLSAG00000008637 vs. C. finmarchicus
Match: gi|592857408|gb|GAXK01100154.1| (TSA: Calanus finmarchicus comp7447_c8_seq2 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 1.514e-1 Identity = 16/43 (37.21%), Postives = 22/43 (51.16%), Query Frame = 0 Query: 12 KLSNEFANVVGKKEAFRPKFIKFV---LKKHNLQDPEKKQYFN 51 KL A ++G RP I + +K H LQDP +K+Y N Sbjct: 649 KLDQRLARLLGVHTQTRPVIISALWQYIKTHKLQDPHEKEYVN 777
BLAST of EMLSAG00000008637 vs. C. finmarchicus
Match: gi|592857407|gb|GAXK01100155.1| (TSA: Calanus finmarchicus comp7447_c8_seq3 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 1.525e-1 Identity = 16/43 (37.21%), Postives = 22/43 (51.16%), Query Frame = 0 Query: 12 KLSNEFANVVGKKEAFRPKFIKFV---LKKHNLQDPEKKQYFN 51 KL A ++G RP I + +K H LQDP +K+Y N Sbjct: 637 KLDQRLARLLGVHTQTRPVIISALWQYIKTHKLQDPHEKEYVN 765
BLAST of EMLSAG00000008637 vs. C. finmarchicus
Match: gi|592857409|gb|GAXK01100153.1| (TSA: Calanus finmarchicus comp7447_c8_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 1.552e-1 Identity = 16/43 (37.21%), Postives = 22/43 (51.16%), Query Frame = 0 Query: 12 KLSNEFANVVGKKEAFRPKFIKFV---LKKHNLQDPEKKQYFN 51 KL A ++G RP I + +K H LQDP +K+Y N Sbjct: 900 KLDQRLARLLGVHTQTRPVIISALWQYIKTHKLQDPHEKEYVN 1028
BLAST of EMLSAG00000008637 vs. L. salmonis peptides
Match: EMLSAP00000008637 (pep:novel supercontig:LSalAtl2s:LSalAtl2s532:229776:238340:1 gene:EMLSAG00000008637 transcript:EMLSAT00000008637 description:"snap_masked-LSalAtl2s532-processed-gene-2.6") HSP 1 Score: 124.405 bits (311), Expect = 8.591e-39 Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 Query: 1 MPKEYGLTQTMKLSNEFANVVGKKEAFRPKFIKFVLKKHNLQDPEKKQYFNPVKKMVIFPKI 62 MPKEYGLTQTMKLSNEFANVVGKKEAFRPKFIKFVLKKHNLQDPEKKQYFNPVKKMVIFPKI Sbjct: 1 MPKEYGLTQTMKLSNEFANVVGKKEAFRPKFIKFVLKKHNLQDPEKKQYFNPVKKMVIFPKI 62
BLAST of EMLSAG00000008637 vs. L. salmonis peptides
Match: EMLSAP00000002923 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1687:28882:29139:-1 gene:EMLSAG00000002923 transcript:EMLSAT00000002923 description:"augustus_masked-LSalAtl2s1687-processed-gene-0.0") HSP 1 Score: 81.6481 bits (200), Expect = 8.073e-22 Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 0 Query: 1 MPKEYGLTQTMKLSNEFANVVGKKEAFRPKFIKFV---LKKHNLQDPEKKQYFNPVKKMV 57 MPK GLT+TMKLSNE A+VVGKKEA R + IK + LKKHNLQDPE KQYF P KKM Sbjct: 1 MPKGSGLTKTMKLSNELADVVGKKEASRAECIKLLWAYLKKHNLQDPENKQYFTPDKKMA 60
BLAST of EMLSAG00000008637 vs. L. salmonis peptides
Match: EMLSAP00000001079 (pep:novel supercontig:LSalAtl2s:LSalAtl2s117:677548:677954:-1 gene:EMLSAG00000001079 transcript:EMLSAT00000001079 description:"maker-LSalAtl2s117-augustus-gene-7.31") HSP 1 Score: 80.1073 bits (196), Expect = 2.819e-21 Identity = 42/60 (70.00%), Postives = 45/60 (75.00%), Query Frame = 0 Query: 1 MPKEYGLTQTMKLSNEFANVVGKKEAFRPKFIKFV---LKKHNLQDPEKKQYFNPVKKMV 57 MPK GLT+TMKLSNE A VVGKKEA R + IK + LKKHNLQDPE KQYF P KKM Sbjct: 1 MPKGSGLTKTMKLSNELAXVVGKKEASRAECIKLLWAYLKKHNLQDPENKQYFTPDKKMA 60
BLAST of EMLSAG00000008637 vs. nr
Match: gi|239938969|gb|ACS36127.1| (SWIB domain-containing protein, partial [Tigriopus japonicus]) HSP 1 Score: 65.855 bits (159), Expect = 7.034e-13 Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = 0 Query: 1 MPKEYGLTQTMKLSNEFANVVGKKEAFRPKFIKFV---LKKHNLQDPEKKQYFNPVKKMV 57 M K GLT+ MKLS E A VVGKKEA R + IK + +KKHNLQDPE KQ+F P KKM Sbjct: 5 MAKGSGLTKPMKLSPELAEVVGKKEASRSECIKQLWAYIKKHNLQDPENKQFFKPDKKMA 64
BLAST of EMLSAG00000008637 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold430_size173499-processed-gene-0.18 (protein:Tk07003 transcript:snap_masked-scaffold430_size173499-processed-gene-0.18-mRNA-1 annotation:"swib domain-containing protein") HSP 1 Score: 72.0182 bits (175), Expect = 1.663e-18 Identity = 39/60 (65.00%), Postives = 43/60 (71.67%), Query Frame = 0 Query: 1 MPKEYGLTQTMKLSNEFANVVGKKEAFRPKFIKFV---LKKHNLQDPEKKQYFNPVKKMV 57 MPK GLT+ MKLS E A VVGKKEA R + IK + +KKHNLQDPE KQYF P KKM Sbjct: 73 MPKGAGLTKPMKLSPELAEVVGKKEASRAECIKQLWAYIKKHNLQDPENKQYFTPDKKMA 132 The following BLAST results are available for this feature:
BLAST of EMLSAG00000008637 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000008637 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 24
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BLAST of EMLSAG00000008637 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000008637 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000008637 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000008637 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 1
BLAST of EMLSAG00000008637 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s532:229776..238340+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000008637-691403 ID=EMLSAG00000008637-691403|Name=EMLSAG00000008637|organism=Lepeophtheirus salmonis|type=gene|length=8565bp|location=Sequence derived from alignment at LSalAtl2s532:229776..238340+ (Lepeophtheirus salmonis)back to top Add to Basket
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