EMLSAG00000000027, EMLSAG00000000027-682793 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000027
Unique NameEMLSAG00000000027-682793
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000027 vs. C. finmarchicus
Match: gi|592849083|gb|GAXK01108461.1| (TSA: Calanus finmarchicus comp1577026_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 7.089e+0
Identity = 20/61 (32.79%), Postives = 27/61 (44.26%), Query Frame = 0 
Query:    3 RSGGSSSKSTFHGMDNTFMSRNKSSNTDNQYYQDVVKKVERQRCIQEF---ENGNEKRMLN 60
            R  G S    F  MD   +  N S N D +   D+V ++   +C+  F    NG E RM N
Sbjct: 3011 RWLGYSDGHEFEIMDTPGL--NDSENRDTEIIHDIVTRLRHNKCVNMFLIVRNGQEVRMTN 3187
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BLAST of EMLSAG00000000027 vs. C. finmarchicus
Match: gi|592849082|gb|GAXK01108462.1| (TSA: Calanus finmarchicus comp1577026_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 7.336e+0
Identity = 20/61 (32.79%), Postives = 27/61 (44.26%), Query Frame = 0 
Query:    3 RSGGSSSKSTFHGMDNTFMSRNKSSNTDNQYYQDVVKKVERQRCIQEF---ENGNEKRMLN 60
            R  G S    F  MD   +  N S N D +   D+V ++   +C+  F    NG E RM N
Sbjct: 2999 RWLGYSDGHEFEIMDTPGL--NDSENRDTEIIHDIVTRLRHNKCVNMFLIVRNGQEVRMTN 3175
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BLAST of EMLSAG00000000027 vs. L. salmonis peptides
Match: EMLSAP00000000027 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1006:100895:107314:1 gene:EMLSAG00000000027 transcript:EMLSAT00000000027 description:"maker-LSalAtl2s1006-augustus-gene-1.17")

HSP 1 Score: 776.933 bits (2005), Expect = 0.000e+0
Identity = 384/384 (100.00%), Postives = 384/384 (100.00%), Query Frame = 0 
Query:    1 MPRSGGSSSKSTFHGMDNTFMSRNKSSNTDNQYYQDVVKKVERQRCIQEFENGNEKRMLNRKTHGRNEESHTKSAEFKIQLKNHVSQTTDLESEKEATAQRLLAEEKVIQDDDTLTDMKHKSRILAQNSLAEHHERKFQEDIERNEESQEDAIEASKVTAHENFVDEEMQRNGILKAQGYQNRNKEMMSHVNPTEKCKISEGYDNNTSSKYKEEEQTFLRERKKNENERILGYRDXLAAIEKRRQLESGXLADLLHGQSSNSNPSNVKRKDHSSSSAQMNELLRNQIHERRQQVKEIKMKRQEEEEARLETEALYKASELAQKERRVKEQNTYREFLQMQMEEKRNISSKREAEDRDFYKLNEREEADNERDERGRVSEMLQAH 384
            MPRSGGSSSKSTFHGMDNTFMSRNKSSNTDNQYYQDVVKKVERQRCIQEFENGNEKRMLNRKTHGRNEESHTKSAEFKIQLKNHVSQTTDLESEKEATAQRLLAEEKVIQDDDTLTDMKHKSRILAQNSLAEHHERKFQEDIERNEESQEDAIEASKVTAHENFVDEEMQRNGILKAQGYQNRNKEMMSHVNPTEKCKISEGYDNNTSSKYKEEEQTFLRERKKNENERILGYRDXLAAIEKRRQLESGXLADLLHGQSSNSNPSNVKRKDHSSSSAQMNELLRNQIHERRQQVKEIKMKRQEEEEARLETEALYKASELAQKERRVKEQNTYREFLQMQMEEKRNISSKREAEDRDFYKLNEREEADNERDERGRVSEMLQAH
Sbjct:    1 MPRSGGSSSKSTFHGMDNTFMSRNKSSNTDNQYYQDVVKKVERQRCIQEFENGNEKRMLNRKTHGRNEESHTKSAEFKIQLKNHVSQTTDLESEKEATAQRLLAEEKVIQDDDTLTDMKHKSRILAQNSLAEHHERKFQEDIERNEESQEDAIEASKVTAHENFVDEEMQRNGILKAQGYQNRNKEMMSHVNPTEKCKISEGYDNNTSSKYKEEEQTFLRERKKNENERILGYRDXLAAIEKRRQLESGXLADLLHGQSSNSNPSNVKRKDHSSSSAQMNELLRNQIHERRQQVKEIKMKRQEEEEARLETEALYKASELAQKERRVKEQNTYREFLQMQMEEKRNISSKREAEDRDFYKLNEREEADNERDERGRVSEMLQAH 384
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000027 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000027 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592849083|gb|GAXK01108461.1|7.089e+032.79TSA: Calanus finmarchicus comp1577026_c0_seq1 tran... [more]
gi|592849082|gb|GAXK01108462.1|7.336e+032.79TSA: Calanus finmarchicus comp1577026_c0_seq2 tran... [more]
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BLAST of EMLSAG00000000027 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000000270.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1006:1008... [more]
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BLAST of EMLSAG00000000027 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000027 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000027 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000027 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1006supercontigLSalAtl2s1006:100895..107314 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1006-augustus-gene-1.17
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000027 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000027EMLSAT00000000027-695874Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1006:100895..107314+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000027-682793 ID=EMLSAG00000000027-682793|Name=EMLSAG00000000027|organism=Lepeophtheirus salmonis|type=gene|length=6420bp|location=Sequence derived from alignment at LSalAtl2s1006:100895..107314+ (Lepeophtheirus salmonis)
TTTGCTCACTACTCCGTCAGTAGTGATTGTATAACTCTTTAAGACAGAAT
GCCAAGATCAGGAGGAAGTTCATCCAAGTCCACGTAATCCCTCAATATGA
ATCAATCTTTTACATTTCATCATTATTTTACTCAATAATTGTTACAATAG
GTTTCATGGAATGGACAATACATTCATGTCCAGGAATAAGTCCAGTAATA
CTGATAATCAATACTACCAGGATGTTGTTAAGAAAGTGGAGCGGCAGCGC
TGTATACAAGAATTTGAGAATGGGAATGAAAAAAGGATGCTAAACCGCAA
AACACATGGAAGGAATGAGGAGTCACATACAAAGTCAGCGTGAGTCATTT
ATATACATTGTTTAGGCTTTTAAAAGTCGTTTTCTTATCACATCCTGTCC
GAGGAATTGTTAAAAATGTGGTCCATATATGCTATACAGGGTGTCCACGA
TAAATGGGAACTATCTTAAAATTCACCTGCATGATAAAAATGGAATTAGG
AGTGTTATTTGTTAATATGAAAAAGTTACACATGATATTAAAATCTAAAT
TTATTCAACATGYCCYCCCTCAGCAGCCACGTTCTTCTCCATCCTGCCCC
TAAAGGATTTGCATGCCCTGATGACTTCCGCAGAATCGACAGCATTCCAC
TCCTTCATAATGGAGCCCTTCAGGGCCGCGATGCTCTTGTGGCTGACCTG
GCMCACCTCCCTCTCCAACATCCCCTACCAGTAGTAATAACACGGATTGA
GGTGCCGTGAGTTGGAGGGCCAGGTGTTGCGATCCCAGAAAGGTATGTCG
TGGGAGTTGAAGAGGTTAGTGGCCCTCATGGCGATGTGTGCGAGCACTAA
GTCTTGTTGGAATATGAMCTCTCYCCTAGCTGCCGTATCCTTCATCCAGA
GGATGACGAACTCCTCCATGACTTCGCAGTACCTTATCGCGTTAACCCTT
TCCTTGGGATTGAAGAAGAAAGGAGGCATCACCTCACCGGTGCAGCAGAT
GACACCCAGGGTCATCACGGAGGCCGGGAACTTTGTGGTGAAGACTCCAG
GGACCTCTTCTCTCTGCTAGGCAAGCCACCTGTCATTCTGGACGTTGTAG
CTTCTGTCGAAGCGGAGAAGAAGATAATTCTTCCTCCATGGCTCTTCAGG
TCATTGAGAAGACACTTTTGGTGAGCCTGGTGGCCTTCATGGATGCCGTG
AGGATGTGTTGTTTGGTCATTCGGTATGACCTGTATCTGAGGTCCTCCTT
CACAGCCTTGGAGATCAACTGCTTACTCACTTAATGGTTCTGGGCCAACC
TGGACAAGGAAGTCCCCGGCAAAGCCTTGATGGACTTCCGCAGGCCTTCA
AGGAAGCGGGGAGTGCGGATTCAGTCGCTTCTCATGTTGTGGGCCTTGCG
GCAGAACTTCACCTCAACCTCCCAGGCATTGAAGGCCCGGTACACCGTCT
TGGTCTTGTGGTAGTTAAGAAGCCTGTAGATAGCAGRGGGCTTGTGTCCC
GCGSGAGCCAATTCGAGGATGGCGTCCCTCCTTGTTTGTTCCATGATGAC
TATTGTTTGTTGTCAAAACAATTGTGGTGAAGTCATAGTGTATTGTTCAA
GCAACCTTTTATATTAGTATGATTTAACCCCGAATATCCACATTATGGAT
CGGGATGAAGTTTAAAGTAGTTCCACTTTATCGTGGACACCCGTATGCGT
AAAAACAATTTTGAACAAAAATCAGGAAATTAAGAAAATCACAATTTGTT
TCTGTGCTTGCCCAATATTTCATAGACATATTTGAGTCAATTATAGGCTT
TTTATTCAAATTACTGGGATGGCTTATGATAACCAAGAACTTTTATTTAA
AAATAACATATTTCGGGTTAAGTTGACCCTTTTCAAATAAGATTCATTAT
CCATTCTTTTATTATGACCATCAATTTTCGCTATCTAAGTGCTATTTACT
ACGACTCCAAAGGGTTATGAATATGAATAATTTGTTCATACAATTAAACG
ATAATTCCTGAAGGAATACAAATGTAATCCACGCTCCACTTTGATAAAAA
ATAATCTAGCTTGCTTTTTTGTTAAATGACCACATATACCAATTCATGAA
ACAAATAACGGAATCTCGATATACAAAAAAAAAAATAATAATAATACATT
TACAATCTTGGGTTGACTCGGACGATGATGATTTTTACAATCTGCTTAAA
CTGTGAGTCCATTTTGAATTACAAAAGAAAAACCAAACGAAGTCGGTTTG
GTTGCAATCACTAAACCTCATCAAGTTTTTTGTTTCTTAAAAAAATTCGA
ACAAATCAAATCCCAATCTCTGAAGTGACAGAAAGATATAGATTAGATTA
TTGTTTCGAATTTTGATTACAACTAGTTTGGAAAAGTTGTCTTGTGGTAA
GAAAATAAACTAAGCAAAATTTTTGGGGCATACCTATTTACTTAGTAAAG
AGTTTTTGACTTATCCGAAAATTTGATTGAGATGTACAACTTAAATGTAA
ATATTGTACCCTAAACTACATATATTTTTTATTATATCATAGATATTATT
CAGGGAGTTCAAAGTATACTAGCCGTCCACCCACAGGAGTAGATTTGGCC
CTGGGCCTGAATGGTTTTAAGGATCTTACTCCCCTTCCTAGAGCACGTGT
TCCATCATCTCTTCAGAATGATAGGCTTGAAAAGTATGACTTTATAAAAA
GCTATCGAGACAGAACGGGKAAGTAGTCCTCATTATATATACTCGAATGA
AAGTTGACTATTTATCATTATCAATCTAAGATGAATCTGAGAAGTGGAGC
AACTTCAAATCTGAAGTAGAGGAAAGGAAGACACGAGAGGAAATGGAAAA
AAAGAAAACTTTGGAAGAATCTCGATATCAACAATTGGAGAATGACAGTA
TATTATTACGGGAGGAAAGGACAAAGGAATTGGAGAAGAAACTACCAAAT
GATTGGGACTATCAAGTACTTTTAACTTTTAATATATTTATATTACAAAT
GACTAGTGATGAAAATCGTGTTTATAATGGGCATGTGAAAAAATGAAACC
GTAAATCAGCACTGTACCCCTCACAATTTGAATAATGTTTTGGAGGAGAT
CAGCTACAATCAGCTGTTAACAAGGGAGTTGGGGGAGAAGGAAATAAACA
AGGTTATTGGCAAGAATGTGTCGAATGTCAATCCTCTATTCCAATTACAG
TCCAACAAGGACTCACAATTATAATTCCCTCAACAAATCCTCGGGGTTAA
TCTCCGTCTTTTATAAACACACACAAATAATCAATCAGGTTTTGAATATA
ATTGAATCTATTTAGGAAAGGATGTTCCACTACGTTCAGGAACTTAATAA
AAATAATGACAACTGCTAGGGAAAAGAAAAGAAAAAACCGGAATGGCTAA
AATATTCAGACAGTTTACATAACCCTCTATGAAAATGTATTCTGCAAGCT
AAGAAGCGCATTTTGGTGCTTTGTTTTAAAGCTTTAGGTAGGAGGGTTTT
TGAAAATGTGGGCTATAGTATTTTCTTTAAAAAAGGTCACTCAGGCAAAT
TACACAGCAGAGCTAAAAAAAAATCATATTTTTAATTTTATTGTGAATGC
TAGGGATTTTTGAAATGTTTCTCAAAACTTTAAAATTTAAAATTTAATTT
TCGAAATTTTTCCAAGAAAGTTTAATATTTAAAATTTAATTTTCGAAAAT
TTCCCGAAAAAGCTTAATAATCTAAAATTTAATTTTCGAAAATTTTCCAA
AAAAGTTTAATATTTAAAATTTAATTTTCGAAATTTTTCCAAAAAAGTTT
AATATTTAAAATTTAATTTTCGAAATTTTTCCAAAAAAGTTTAATATTTA
AAAAAAAAAATTCCAAAAAATTATAATTTTTTGCAAACAACTGTGGATTA
TGATTTTTTTTTTTCAAAAGTATATTTTTTATAAAGTGATACGGATTTTT
CAAAAAAAGTCAAAAACCCAAAATATATACCTCCAGACGCCCTAAATTTA
TGTTGCACGTCCAAGTTATTGATAATAGTTGCTATTTAATCTACGTTAAA
TATCTAATTACAGATCCAACTTAAAAACCACGTGTCCCAAACGACGGATC
TTGAATCTGAGAAAGAAGCAACAGCTCAAAGACTCCTTGCCGAAGAAAAA
GTAATACAAGATGATGATACACTGACAGATATGAAACACAAATCCAGGAT
CCTGGCCCAAAACTCCCTTGCAGAGCATCACGAGAGGAAATTCCAGGAAG
ATATCGAAAGGAATGAAGAATCTCAAGAAGATGCAATTGAGGCCTCTAAA
GTGACTGCTCATGAAAATTTTGTGGATGAAGAGATGCAAAGGAATGGGAT
CTTAAAGGCTCAAGGATACCAAAATAGGAACAAGGAAATGATGAGTCATG
TGAATCCAACGGAAAAATGCAAAATATCTGAGGGGTATGATAATAACACT
TCTTCCAAATATAAAGAAGAGGAGCAGACCTTCTTGAGAGAACGGAAGAA
GAATGAGAATGAAAGGATTCTAGGCTATCGTGACAMCTTGGCTGCCATTG
AGAAACGCCGGCAATTAGAGTCAGGCGKACTAGCGGATTTACTCCACGGA
CAATCGTCAAATAGTAATCCTTCTAATGTTAAAAGAAAGGATCATTCCTC
CTCCTCGGCCCAAATGAATGAACTTTTACGTAATCAAATCCATGAAAGAA
GACAACAAGTCAAGGAAATCAAAATGAAAAGGCAAGAAGAGGAAGAAGCT
CGACTCGAGACTGAAGCTCTTTATAAAGCCTCTGAATTGGCTCAAAAAGA
AAGACGAGTTAAAGAGCAGAATACTTACCGTGAGTTTCTACAGATGCAAA
TGGAAGAAAAGCGAAATATATCATCAAAAAGAGAGGCGGAGGATAGAGAC
TTTTATAAATTAAATGAAAGAGAAGAGGCTGACAATGAGAGGGATGAAAG
AGGAAGGGTATCCGAAATGCTGCAAGCCCATTAAAATGTACTTGGCGATC
CTGGATGGATATGATCATTTTTATTAATATTTATATTTGAGGATCGCCAA
AAAACAAATATGTATTTTGTATATCTCTAGGTAATTCTGTCTCCTACGTT
TTTGCTTATGGTACATTCCCCACTTGGATATCTTTCTGCATATACATATT
CGTCACCTTTTTATATTTTTATGTCATAGTGGACCTGGGCTCTGAGTGTC
TACTTTCTTTCGCGTGATGCACGAATCTTGTGGCCTTTTTAGATCTACTT
TCCCTTTATCCCACCTTCCTCATCCTTCTAGAGTAATCTGTTTCTATTCT
AGGCTTTTGTTTTGTTTCAACAACACAACAGAGGTCATTGTGGATGGAAA
TATCTGATTTACGTTGTACCTCTAGTCTTTACTGTTTAAACAGGCTTTTC
TTTCTATCTATGGAGTTTCTTACATTTCTTCAAGCATTACCTAAGAACAT
GCCTATGACTAAGGAGCAACCTTTTCAATGAGTTCTTTCGGAAAAGATTC
ACCATTCCGGATACATGAATCATTTATCCCTAGGTTAATAGATATACAAG
TATATACCATAATACCATTTTCCGAATGATTTTCACTCCCACTAAGCTTT
TTAAGTGTGACATCATAGGTTATAACTGTTACCAAGGGTAGCAGTATATA
ACCTTCCTTGACTGTTACTGGTAGAGTACCACTGTTATACTCTATGATGC
CAAAATCTGTCGGTCTTGCCCAGCAGTCGGTATGGTACATCAAATCGAAA
ATTCCAGCAAGCCCAATTACACGATGGGATACTCTTGCATTTCAATTACC
CTTACTTTGTCCTTATAGACCCTATGTCCCTTTTTCTTCTGATCTACAAA
TGAGATGTAATGGTAAAGTTTGAGCATAGCAGGACTGTTTGATGCAAATG
TATAGCCACTAGAGTGCCCTCTATCTAGTCAAAACTTGAGAGGATTTCAA
ATTGTAACGACAAAGTCGAATTTCTGTCGAATAATTCAAATTAGACCGTG
GCATTGTATTCTTGCTATAGAATCTTTGATTTTTTTGAGAATGGATTTAT
CATGATTCATAATATTATGAGTCATTATTATCCTTTAAATCCTATTGAGT
TTTACTTGAAAACTAGTGCCGTGCATCTGCAGACAAGATGTTCAAAAGCC
CCTATAATATAACATCTTAAAAAGGCAGGGAATATGTCATGCGAAAAAAT
CTCCTCGTGGCTAATAACCAGTGCCAAAAATATTTTCTACCAAATTACCG
TTCACTTTTTTGTAAATAGCTGTGTAACTAATTTATTCCATGGATTCCTC
CAAATGCAATAATCCTGTTCAAAAAGGAAATTAATTCTTAATTAAGTTGT
AATATGCTATATTATGAGCCTTCTATTGTATACACTTTCCTATCAACAAA
AATATCTTTTTTTATCCGAT
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