EMLSAG00000000028, EMLSAG00000000028-682794 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000028
Unique NameEMLSAG00000000028-682794
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000028 vs. C. finmarchicus
Match: gi|592759818|gb|GAXK01194595.1| (TSA: Calanus finmarchicus comp88741_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 51.6026 bits (122), Expect = 1.465e-7
Identity = 24/60 (40.00%), Postives = 38/60 (63.33%), Query Frame = 0 
Query:   29 IFNLPNEVTSWKCFGQTLSENPKNGEVYTFDYDLCWTGLIIAKLLFLFLYPTFGGQFFAS 88
            +FN P ++T WKC G TL EN +   +YT++ D+C+  ++ AKL F ++Y  + G  F S
Sbjct:  145 LFN-PLDITHWKCLGLTLYENTEKSALYTYEVDVCFMAVLGAKLSFPWIYEYYTGNNFFS 321
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BLAST of EMLSAG00000000028 vs. C. finmarchicus
Match: gi|592775956|gb|GAXK01178612.1| (TSA: Calanus finmarchicus comp14440_c4_seq6 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 2.947e+0
Identity = 14/33 (42.42%), Postives = 22/33 (66.67%), Query Frame = 0 
Query:   44 QTLSENPKNGEVYTFDYDLCWTGLIIAKLLFLF 76
            QTL ++    ++ +  YDLC++GL+  KLL LF
Sbjct:  195 QTLEQH----QMKSVQYDLCFSGLVAKKLLLLF 281
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BLAST of EMLSAG00000000028 vs. L. salmonis peptides
Match: EMLSAP00000000028 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1006:124606:125615:1 gene:EMLSAG00000000028 transcript:EMLSAT00000000028 description:"maker-LSalAtl2s1006-augustus-gene-1.18")

HSP 1 Score: 345.895 bits (886), Expect = 1.081e-122
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 
Query:    1 MIGSKTLAAGILLLALIQSSYGTSFVTNIFNLPNEVTSWKCFGQTLSENPKNGEVYTFDYDLCWTGLIIAKLLFLFLYPTFGGQFFASDDEEPVSSETPEIKRYGHLMGMDFNNPYEYAEDPSTFARRELSLGERLSTAFRSLKSDARNVVRYERKRXPEDYLFQGGQ 168
            MIGSKTLAAGILLLALIQSSYGTSFVTNIFNLPNEVTSWKCFGQTLSENPKNGEVYTFDYDLCWTGLIIAKLLFLFLYPTFGGQFFASDDEEPVSSETPEIKRYGHLMGMDFNNPYEYAEDPSTFARRELSLGERLSTAFRSLKSDARNVVRYERKRXPEDYLFQGGQ
Sbjct:    1 MIGSKTLAAGILLLALIQSSYGTSFVTNIFNLPNEVTSWKCFGQTLSENPKNGEVYTFDYDLCWTGLIIAKLLFLFLYPTFGGQFFASDDEEPVSSETPEIKRYGHLMGMDFNNPYEYAEDPSTFARRELSLGERLSTAFRSLKSDARNVVRYERKRXPEDYLFQGGQ 168
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000028 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000028 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592759818|gb|GAXK01194595.1|1.465e-740.00TSA: Calanus finmarchicus comp88741_c0_seq1 transc... [more]
gi|592775956|gb|GAXK01178612.1|2.947e+042.42TSA: Calanus finmarchicus comp14440_c4_seq6 transc... [more]
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BLAST of EMLSAG00000000028 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000000281.081e-122100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1006:1246... [more]
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BLAST of EMLSAG00000000028 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000028 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000028 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000028 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1006supercontigLSalAtl2s1006:124606..125615 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1006-augustus-gene-1.18
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000028 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000028EMLSAT00000000028-695875Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1006:124606..125615+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000028-682794 ID=EMLSAG00000000028-682794|Name=EMLSAG00000000028|organism=Lepeophtheirus salmonis|type=gene|length=1010bp|location=Sequence derived from alignment at LSalAtl2s1006:124606..125615+ (Lepeophtheirus salmonis)
CTAGCTATGCGAGAGAAACTCCCTCGTTGCTATAGTCCTCCTTTCAATAG
GTGCTCCTTTACTGCAACTCATAGTATCACCATTGTAACAGCAATGCACC
CCCTTATTATCTTCACTTATGTGAGGAGGACAATTGCATCAGAATGCATA
CCTTAAAATCACGTAAAGCATTAGGTCTGTTTCTTTATTTTCTTTTTCTT
TTTATCCTGACCTACAGAAAAGGAAAAATAAAAAGATTGTCTACATATAG
CAGGTCACCGAATGGTTTTTCAGTTGCATTGGAAGTGGATTTGAGGGAAG
ACGTCTTATACAAGTATTCATTATGATTGGATCTAAAACTCTAGCTGCCG
GGATTTTGCTACTAGCCCTCATTCAGAGCTCCTATGGAACATCCTTTGTC
ACCAATATATTTAATTTGCCGAATGAAGTTACGAGTTGGAAATGCTTTGG
ACAGACATTGAGTGAGAATCCAAAGAATGGTGAGGTGTACACATTTGACT
ATGATCTCTGTTGGACGGGACTCATCATTGCCAAATTATTGTTTCTCTTC
TTGTATCCTACTTTTGGGGGTCAATGTAAGACAAATCATGTATAAAATGT
CGTTGATATTGATTGATTTTTTTGCATTTTCAGTCTTTGCCTCTGATGAT
GAGGAACCTGTCTCTTCAGAAACCCCTGAAATCAAACGCTACGGTCACCT
GATGGGAATGGATTTTAATAACCCATATGAATATGCGGAAGATCCTTCCA
CTTTTGCTCGAAGAGAGCTGTCTCTTGGAGAAAGATTGTCCACTGCTTTC
AGGAGTCTCAAATCAGATGCTCGCAATGTAGTTCGTTATGAGAGGAAAAG
ATAMCCAGAGGATTATCTTTTTCAAGGGGGGCAATAAATAAAGTCTCCTA
GATTTGTTTTAGTGTTGATTTTAGGAAATTTCTTATTGATTATTTTTTTT
TTATCATCTGTCGTTAAATGTCTTTTTGAAATACACGTTAGGTTACAATT
TAAAAGCATT
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