EMLSAG00000000106, EMLSAG00000000106-682872 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592914988|gb|GAXK01043387.1| (TSA: Calanus finmarchicus comp50798_c0_seq2 transcribed RNA sequence) HSP 1 Score: 40.4318 bits (93), Expect = 4.377e-2 Identity = 42/171 (24.56%), Postives = 71/171 (41.52%), Query Frame = 0 Query: 1004 SQVPSLMLLCCGLLSPKKLIKNCKVPPLNPESKV----GALERDRFWERIRLSFYHGFGDFE------SFEKCLEKQKRILGFLITRIRSSSPTKIVWNH-----WLSKIKMFILAPLHDQFM--EEAGSFSDHEERSFKVIEYPFMSESNCKSIIQHLCLQCWDSVCVGC 1157 S VPSL LLC G++ ++C PPL + + + D E + + + +EK + ++ +L +I S S K+ H W+ K +++ PLHD F+ +AG ++V+E+P + + LCL C C GC Sbjct: 2135 SHVPSLKLLCRGVIP-----RSCSHPPLRVKEGLEYYHALVWPDNNKEEVVFKYMSRLANITMVTSVGEYEKLCREPLKVALYLEKKI-SKSREKVGHRHSQTKRWVEKYTLYLTFPLHDIFLVVSQAG---------YRVLEFPLKEDK-----VGLLCLVCPTMSCKGC 2587
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592914989|gb|GAXK01043386.1| (TSA: Calanus finmarchicus comp50798_c0_seq1 transcribed RNA sequence) HSP 1 Score: 40.4318 bits (93), Expect = 4.380e-2 Identity = 42/171 (24.56%), Postives = 71/171 (41.52%), Query Frame = 0 Query: 1004 SQVPSLMLLCCGLLSPKKLIKNCKVPPLNPESKV----GALERDRFWERIRLSFYHGFGDFE------SFEKCLEKQKRILGFLITRIRSSSPTKIVWNH-----WLSKIKMFILAPLHDQFM--EEAGSFSDHEERSFKVIEYPFMSESNCKSIIQHLCLQCWDSVCVGC 1157 S VPSL LLC G++ ++C PPL + + + D E + + + +EK + ++ +L +I S S K+ H W+ K +++ PLHD F+ +AG ++V+E+P + + LCL C C GC Sbjct: 2147 SHVPSLKLLCRGVIP-----RSCSHPPLRVKEGLEYYHALVWPDNNKEEVVFKYMSRLANITMVTSVGEYEKLCREPLKVALYLEKKI-SKSREKVGHRHSQTKRWVEKYTLYLTFPLHDIFLVVSQAG---------YRVLEFPLKEDK-----VGLLCLVCPTMSCKGC 2599
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592771592|gb|GAXK01182976.1| (TSA: Calanus finmarchicus comp289174_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.965 bits (84), Expect = 3.199e-1 Identity = 19/60 (31.67%), Postives = 29/60 (48.33%), Query Frame = 0 Query: 744 KSIGGSKHGEFFSHCTDCKFYFRREHIYLKHLETCCPGMNSLICSTCQRHFKSEVGMLKH 803 K++ KHG+F CT C F++ + KH + PGM C C F E+ + +H Sbjct: 132 KNMAHKKHGQF--KCTFCDQIFKKTNRLEKHAQMMHPGMKKFGCELCGEKFSYEISLTEH 305
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592783920|gb|GAXK01170648.1| (TSA: Calanus finmarchicus comp5473380_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 9.189e-1 Identity = 14/32 (43.75%), Postives = 17/32 (53.12%), Query Frame = 0 Query: 948 DYQNVADLWECDGCDKVFSYETEYIKHIKTCE 979 DY + WEC GC F + E +KHI CE Sbjct: 9 DYSGKGEFWECTGCSTRFP-KNELLKHIPICE 101
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592770077|gb|GAXK01184491.1| (TSA: Calanus finmarchicus comp134554_c28_seq23 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 1.037e+0 Identity = 14/30 (46.67%), Postives = 18/30 (60.00%), Query Frame = 0 Query: 142 EGDESQHKKITIGQIWVTLDNSFCLINSSV 171 E E Q K+ +W+TL N+FC I SSV Sbjct: 209 ELSEEQTMKLAFSMLWLTLINTFCFIYSSV 298
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592770081|gb|GAXK01184487.1| (TSA: Calanus finmarchicus comp134554_c28_seq19 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 1.290e+0 Identity = 14/30 (46.67%), Postives = 18/30 (60.00%), Query Frame = 0 Query: 142 EGDESQHKKITIGQIWVTLDNSFCLINSSV 171 E E Q K+ +W+TL N+FC I SSV Sbjct: 252 ELSEEQTMKLAFSMLWLTLINTFCFIYSSV 341
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592807530|gb|GAXK01147038.1| (TSA: Calanus finmarchicus comp4537226_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 2.730e+0 Identity = 19/59 (32.20%), Postives = 32/59 (54.24%), Query Frame = 0 Query: 925 CAGCHLDNFSTLSELDKHQVECQDYQNVADLWECDGCDKVFSYETEYIKHIKTCEVIEI 983 CA C L NF T ++L+ H V+ D ++ EC+ C K F+ E H +T ++++ Sbjct: 32 CAECSL-NFQTRADLNSHVVQNHDTADI----ECEQCGKFFASRKELKDHRRTHNIVDL 193
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592903508|gb|GAXK01054867.1| (TSA: Calanus finmarchicus comp1766100_c0_seq1 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 3.231e+0 Identity = 17/53 (32.08%), Postives = 31/53 (58.49%), Query Frame = 0 Query: 924 KCAGCHLDNFSTLSELDKHQVECQDYQNVADLWECDGCDKVFSYETEYIKHIK 976 +C GCH +F+ + L +HQV + + ++C CD F+++T Y +H+K Sbjct: 1684 QCDGCH-KSFARMDNLKRHQVNHKISDYMKHDFKCSLCDFTFAWKTNYQRHMK 1839
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592887048|gb|GAXK01071327.1| (TSA: Calanus finmarchicus comp1565656_c0_seq4 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 4.000e+0 Identity = 16/51 (31.37%), Postives = 25/51 (49.02%), Query Frame = 0 Query: 758 CTDCKFYFRREHIYLKHLETCCPGMNSLICSTCQRHFKSEVGMLKHNCEGI 808 C DC F R+ +H +T + CSTC + FK+E + +H C + Sbjct: 247 CKDCPKAFFRKSDLTQHTKTHNKAKLQMACSTCAQMFKTEKKLKEHTCSAL 399
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592812930|gb|GAXK01141638.1| (TSA: Calanus finmarchicus comp190539_c1_seq1 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 4.497e+0 Identity = 19/47 (40.43%), Postives = 24/47 (51.06%), Query Frame = 0 Query: 758 CTDCKFYFRREHIYLKHLETCCPGMNSLICSTCQRHFKSEVGMLKHN 804 C DC F+R+H H+ET G S C TC R FK+ + HN Sbjct: 143 CKDCGKVFKRKHKLDLHIETHLEGF-SHPCQTCSREFKTRKSLSCHN 280
BLAST of EMLSAG00000000106 vs. L. salmonis peptides
Match: EMLSAP00000000106 (pep:novel supercontig:LSalAtl2s:LSalAtl2s101:146626:151738:-1 gene:EMLSAG00000000106 transcript:EMLSAT00000000106 description:"maker-LSalAtl2s101-snap-gene-1.38") HSP 1 Score: 2665.18 bits (6907), Expect = 0.000e+0 Identity = 1286/1286 (100.00%), Postives = 1286/1286 (100.00%), Query Frame = 0 Query: 1 MNTTPSCSCDIVSSHINKQGTSAIIPTLSCSNERFKISDLSRRNTREYSSSPQCDQGLILLKRLRIADKELKAHEWMSVCGNHKKYLLQDFPLKNHQCGICFNSDQIRLRRVSTKSQDLYKGEVVVGEFVCSECDDLILDGEGDESQHKKITIGQIWVTLDNSFCLINSSVPSLRLLCRGLTNKEPLLNPPELLIKDAIEIRRSLDNANQANKEFITDRMIALGIIPHFSEFRSTADACIRMLHNLLSDGDRKLNKAFWFLKLKLSAFAFLPDENKSGSSKMDQYAFLRKDRICKVLCLACDENECTGCQRPAYPSPISLGDSKGRHLHYLQTTCRCCKKRTSTFHSHPRGNTLRCSSNNCKLNYTDGFKRLCDVDIVFEDDYDVHPQAVCGGCRTYLTSATSPFMSGFPNFYPHNELFCDCDLNFFYANASVQESGSCLSVVMNFSRIPSLTFLAGSILASPAKNNWINTNYLTVKMALEIYQTFMYVHNKKSPDTYEYFKTLALAGVLRYPIKVAFHNKANAFQTVLTILCDSMSHSSRENRTKFRRKLETILNADFYGTEPSLRLTKKTVKFRRNFCVIVMCVICSNLLCEGICGRIPSDPSGSTHKRAKKSSNNSNHKLFRSYDKKLGLRGDLTYKEFQNYRLSGTFVANDEINHYCVNCLNLKCKGCQNSSSDSQKENLKLKLKLEELPTKKELSNYNTTGRFVFEDDLPLINKSKKQSKSNGNFSSSSPKTNDNYSTKSIGGSKHGEFFSHCTDCKFYFRREHIYLKHLETCCPGMNSLICSTCQRHFKSEVGMLKHNCEGIYNLENHQFKNIALDLGSIEYDHFIYILLNHSLPHHWRASSGPKEETLVMEKESVRFRFVISRYKKISNKARLKGEGVKAFKEEIWPIVAKLAIPGEEEEDGDDDDLEEEEDEYELKCAGCHLDNFSTLSELDKHQVECQDYQNVADLWECDGCDKVFSYETEYIKHIKTCEVIEIPEDIRSFYPDDKGRIFCPGCSQVPSLMLLCCGLLSPKKLIKNCKVPPLNPESKVGALERDRFWERIRLSFYHGFGDFESFEKCLEKQKRILGFLITRIRSSSPTKIVWNHWLSKIKMFILAPLHDQFMEEAGSFSDHEERSFKVIEYPFMSESNCKSIIQHLCLQCWDSVCVGCSGEIHQEDYYEKELCTISQTLFFKEFGVICTSEKLFNECTQLGMSLDLKRRASIHELIQYKKGHKIINGTQFEKGGIKKLQATTTTLPLQNNHFNLEKIKKENHRISVLSKAAVSSMPWLIDEECILPD 1286 MNTTPSCSCDIVSSHINKQGTSAIIPTLSCSNERFKISDLSRRNTREYSSSPQCDQGLILLKRLRIADKELKAHEWMSVCGNHKKYLLQDFPLKNHQCGICFNSDQIRLRRVSTKSQDLYKGEVVVGEFVCSECDDLILDGEGDESQHKKITIGQIWVTLDNSFCLINSSVPSLRLLCRGLTNKEPLLNPPELLIKDAIEIRRSLDNANQANKEFITDRMIALGIIPHFSEFRSTADACIRMLHNLLSDGDRKLNKAFWFLKLKLSAFAFLPDENKSGSSKMDQYAFLRKDRICKVLCLACDENECTGCQRPAYPSPISLGDSKGRHLHYLQTTCRCCKKRTSTFHSHPRGNTLRCSSNNCKLNYTDGFKRLCDVDIVFEDDYDVHPQAVCGGCRTYLTSATSPFMSGFPNFYPHNELFCDCDLNFFYANASVQESGSCLSVVMNFSRIPSLTFLAGSILASPAKNNWINTNYLTVKMALEIYQTFMYVHNKKSPDTYEYFKTLALAGVLRYPIKVAFHNKANAFQTVLTILCDSMSHSSRENRTKFRRKLETILNADFYGTEPSLRLTKKTVKFRRNFCVIVMCVICSNLLCEGICGRIPSDPSGSTHKRAKKSSNNSNHKLFRSYDKKLGLRGDLTYKEFQNYRLSGTFVANDEINHYCVNCLNLKCKGCQNSSSDSQKENLKLKLKLEELPTKKELSNYNTTGRFVFEDDLPLINKSKKQSKSNGNFSSSSPKTNDNYSTKSIGGSKHGEFFSHCTDCKFYFRREHIYLKHLETCCPGMNSLICSTCQRHFKSEVGMLKHNCEGIYNLENHQFKNIALDLGSIEYDHFIYILLNHSLPHHWRASSGPKEETLVMEKESVRFRFVISRYKKISNKARLKGEGVKAFKEEIWPIVAKLAIPGEEEEDGDDDDLEEEEDEYELKCAGCHLDNFSTLSELDKHQVECQDYQNVADLWECDGCDKVFSYETEYIKHIKTCEVIEIPEDIRSFYPDDKGRIFCPGCSQVPSLMLLCCGLLSPKKLIKNCKVPPLNPESKVGALERDRFWERIRLSFYHGFGDFESFEKCLEKQKRILGFLITRIRSSSPTKIVWNHWLSKIKMFILAPLHDQFMEEAGSFSDHEERSFKVIEYPFMSESNCKSIIQHLCLQCWDSVCVGCSGEIHQEDYYEKELCTISQTLFFKEFGVICTSEKLFNECTQLGMSLDLKRRASIHELIQYKKGHKIINGTQFEKGGIKKLQATTTTLPLQNNHFNLEKIKKENHRISVLSKAAVSSMPWLIDEECILPD Sbjct: 1 MNTTPSCSCDIVSSHINKQGTSAIIPTLSCSNERFKISDLSRRNTREYSSSPQCDQGLILLKRLRIADKELKAHEWMSVCGNHKKYLLQDFPLKNHQCGICFNSDQIRLRRVSTKSQDLYKGEVVVGEFVCSECDDLILDGEGDESQHKKITIGQIWVTLDNSFCLINSSVPSLRLLCRGLTNKEPLLNPPELLIKDAIEIRRSLDNANQANKEFITDRMIALGIIPHFSEFRSTADACIRMLHNLLSDGDRKLNKAFWFLKLKLSAFAFLPDENKSGSSKMDQYAFLRKDRICKVLCLACDENECTGCQRPAYPSPISLGDSKGRHLHYLQTTCRCCKKRTSTFHSHPRGNTLRCSSNNCKLNYTDGFKRLCDVDIVFEDDYDVHPQAVCGGCRTYLTSATSPFMSGFPNFYPHNELFCDCDLNFFYANASVQESGSCLSVVMNFSRIPSLTFLAGSILASPAKNNWINTNYLTVKMALEIYQTFMYVHNKKSPDTYEYFKTLALAGVLRYPIKVAFHNKANAFQTVLTILCDSMSHSSRENRTKFRRKLETILNADFYGTEPSLRLTKKTVKFRRNFCVIVMCVICSNLLCEGICGRIPSDPSGSTHKRAKKSSNNSNHKLFRSYDKKLGLRGDLTYKEFQNYRLSGTFVANDEINHYCVNCLNLKCKGCQNSSSDSQKENLKLKLKLEELPTKKELSNYNTTGRFVFEDDLPLINKSKKQSKSNGNFSSSSPKTNDNYSTKSIGGSKHGEFFSHCTDCKFYFRREHIYLKHLETCCPGMNSLICSTCQRHFKSEVGMLKHNCEGIYNLENHQFKNIALDLGSIEYDHFIYILLNHSLPHHWRASSGPKEETLVMEKESVRFRFVISRYKKISNKARLKGEGVKAFKEEIWPIVAKLAIPGEEEEDGDDDDLEEEEDEYELKCAGCHLDNFSTLSELDKHQVECQDYQNVADLWECDGCDKVFSYETEYIKHIKTCEVIEIPEDIRSFYPDDKGRIFCPGCSQVPSLMLLCCGLLSPKKLIKNCKVPPLNPESKVGALERDRFWERIRLSFYHGFGDFESFEKCLEKQKRILGFLITRIRSSSPTKIVWNHWLSKIKMFILAPLHDQFMEEAGSFSDHEERSFKVIEYPFMSESNCKSIIQHLCLQCWDSVCVGCSGEIHQEDYYEKELCTISQTLFFKEFGVICTSEKLFNECTQLGMSLDLKRRASIHELIQYKKGHKIINGTQFEKGGIKKLQATTTTLPLQNNHFNLEKIKKENHRISVLSKAAVSSMPWLIDEECILPD 1286 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000106 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000000106 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000106 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000106 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000106 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000106 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s101:146626..151738- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000106-682872 ID=EMLSAG00000000106-682872|Name=EMLSAG00000000106|organism=Lepeophtheirus salmonis|type=gene|length=5113bp|location=Sequence derived from alignment at LSalAtl2s101:146626..151738- (Lepeophtheirus salmonis)back to top Add to Basket
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