EMLSAG00000000106, EMLSAG00000000106-682872 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592887049|gb|GAXK01071326.1| (TSA: Calanus finmarchicus comp1565656_c0_seq3 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 4.567e+0 Identity = 16/51 (31.37%), Postives = 25/51 (49.02%), Query Frame = 0 Query: 758 CTDCKFYFRREHIYLKHLETCCPGMNSLICSTCQRHFKSEVGMLKHNCEGI 808 C DC F R+ +H +T + CSTC + FK+E + +H C + Sbjct: 247 CKDCPKAFFRKSDLTQHTKTHNKAKLQMACSTCAQMFKTEKKLKEHTCSAL 399
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592812927|gb|GAXK01141641.1| (TSA: Calanus finmarchicus comp190539_c2_seq1 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 4.798e+0 Identity = 20/53 (37.74%), Postives = 25/53 (47.17%), Query Frame = 0 Query: 752 GEFFSHCTDCKFYFRREHIYLKHLETCCPGMNSLICSTCQRHFKSEVGMLKHN 804 G C DC F+R+H H+ET G S C TC R FK+ + HN Sbjct: 426 GATIWKCKDCGKVFKRKHKLDLHIETHLEGF-SHPCQTCSREFKTRKSLSCHN 581
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592887050|gb|GAXK01071325.1| (TSA: Calanus finmarchicus comp1565656_c0_seq2 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 5.190e+0 Identity = 16/51 (31.37%), Postives = 25/51 (49.02%), Query Frame = 0 Query: 758 CTDCKFYFRREHIYLKHLETCCPGMNSLICSTCQRHFKSEVGMLKHNCEGI 808 C DC F R+ +H +T + CSTC + FK+E + +H C + Sbjct: 247 CKDCPKAFFRKSDLTQHTKTHNKAKLQMACSTCAQMFKTEKKLKEHTCSAL 399
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592887051|gb|GAXK01071324.1| (TSA: Calanus finmarchicus comp1565656_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 5.200e+0 Identity = 16/51 (31.37%), Postives = 25/51 (49.02%), Query Frame = 0 Query: 758 CTDCKFYFRREHIYLKHLETCCPGMNSLICSTCQRHFKSEVGMLKHNCEGI 808 C DC F R+ +H +T + CSTC + FK+E + +H C + Sbjct: 247 CKDCPKAFFRKSDLTQHTKTHNKAKLQMACSTCAQMFKTEKKLKEHTCSAL 399
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592812926|gb|GAXK01141642.1| (TSA: Calanus finmarchicus comp190539_c2_seq2 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 5.286e+0 Identity = 19/47 (40.43%), Postives = 24/47 (51.06%), Query Frame = 0 Query: 758 CTDCKFYFRREHIYLKHLETCCPGMNSLICSTCQRHFKSEVGMLKHN 804 C DC F+R+H H+ET G S C TC R FK+ + HN Sbjct: 426 CKDCGKVFKRKHKLDLHIETHLEGF-SHPCQTCSREFKTRKSLSCHN 563
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592831553|gb|GAXK01125991.1| (TSA: Calanus finmarchicus comp604256_c1_seq1 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 5.475e+0 Identity = 12/40 (30.00%), Postives = 25/40 (62.50%), Query Frame = 0 Query: 948 DYQNVADLWECDGCDKVFSYETEYIKHIKTCEVIEIPEDI 987 D +++ ++ C CD+VF E + I+H+ + +E+ ED+ Sbjct: 540 DQMDISQVYICPWCDRVFRTEKDRIEHLLSGHGVEVKEDV 659
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592812929|gb|GAXK01141639.1| (TSA: Calanus finmarchicus comp190539_c1_seq2 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 5.549e+0 Identity = 19/47 (40.43%), Postives = 24/47 (51.06%), Query Frame = 0 Query: 758 CTDCKFYFRREHIYLKHLETCCPGMNSLICSTCQRHFKSEVGMLKHN 804 C DC F+R+H H+ET G S C TC R FK+ + HN Sbjct: 59 CKDCGKVFKRKHKLDLHIETHLEGF-SHPCQTCSREFKTRKSLSCHN 196
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592812925|gb|GAXK01141643.1| (TSA: Calanus finmarchicus comp190539_c2_seq3 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 5.781e+0 Identity = 19/47 (40.43%), Postives = 24/47 (51.06%), Query Frame = 0 Query: 758 CTDCKFYFRREHIYLKHLETCCPGMNSLICSTCQRHFKSEVGMLKHN 804 C DC F+R+H H+ET G S C TC R FK+ + HN Sbjct: 426 CKDCGKVFKRKHKLDLHIETHLEGF-SHPCQTCSREFKTRKSLSCHN 563
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592797391|gb|GAXK01157177.1| (TSA: Calanus finmarchicus comp443859_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 6.522e+0 Identity = 34/156 (21.79%), Postives = 60/156 (38.46%), Query Frame = 0 Query: 749 SKHGEFFSH-CTDCKFYFRREHIYLKHLETCCPGMNSLICSTCQR----------HFKSEVGMLKHNCE------------GIYNLENHQFKNIALDLGSIEYDHF------IYILLNHSLPHHWRASSGPKEETLV--MEKESVRFRFVISRYKK 873 ++H H C+DC F HL+ C P + + C C+ H + +H CE ++LE H+ NI + S+++ F Y H L H GP E + + +E+ ++R +SR+++ Sbjct: 90 TQHSGLLRHSCSDCDKTFASNTAVKYHLKKCHPRPSGIKCDDCEEIFNNFETFKLHSRKHTSSTEHKCEECHATFSSKTNLNRHSLEEHKIVNINVKKTSLKHYPFTCDECDFYTKRKHYLQLHMLKMHGPDPEMMSCNLCQETFKYRSNLSRHQR 557
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Match: gi|592868410|gb|GAXK01089152.1| (TSA: Calanus finmarchicus comp1416788_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 7.108e+0 Identity = 21/69 (30.43%), Postives = 34/69 (49.28%), Query Frame = 0 Query: 757 HCTDC-KFYFRREHIYLKHLETC-CPGMNSLICSTCQRHFKSEVGMLKHNCEGIYNLENHQFKNIALDL 823 C+ C KF R+ + H+E+ PGM + C CQ+ F+ + HN E + + FK +A+ L Sbjct: 25 QCSICGKFKAVRKGLVRNHIESIHFPGMFTYSCDICQKDFQGRNALAVHNSEKHPSRPKNLFK*VAVVL 231
BLAST of EMLSAG00000000106 vs. L. salmonis peptides
Match: EMLSAP00000000106 (pep:novel supercontig:LSalAtl2s:LSalAtl2s101:146626:151738:-1 gene:EMLSAG00000000106 transcript:EMLSAT00000000106 description:"maker-LSalAtl2s101-snap-gene-1.38") HSP 1 Score: 2665.18 bits (6907), Expect = 0.000e+0 Identity = 1286/1286 (100.00%), Postives = 1286/1286 (100.00%), Query Frame = 0 Query: 1 MNTTPSCSCDIVSSHINKQGTSAIIPTLSCSNERFKISDLSRRNTREYSSSPQCDQGLILLKRLRIADKELKAHEWMSVCGNHKKYLLQDFPLKNHQCGICFNSDQIRLRRVSTKSQDLYKGEVVVGEFVCSECDDLILDGEGDESQHKKITIGQIWVTLDNSFCLINSSVPSLRLLCRGLTNKEPLLNPPELLIKDAIEIRRSLDNANQANKEFITDRMIALGIIPHFSEFRSTADACIRMLHNLLSDGDRKLNKAFWFLKLKLSAFAFLPDENKSGSSKMDQYAFLRKDRICKVLCLACDENECTGCQRPAYPSPISLGDSKGRHLHYLQTTCRCCKKRTSTFHSHPRGNTLRCSSNNCKLNYTDGFKRLCDVDIVFEDDYDVHPQAVCGGCRTYLTSATSPFMSGFPNFYPHNELFCDCDLNFFYANASVQESGSCLSVVMNFSRIPSLTFLAGSILASPAKNNWINTNYLTVKMALEIYQTFMYVHNKKSPDTYEYFKTLALAGVLRYPIKVAFHNKANAFQTVLTILCDSMSHSSRENRTKFRRKLETILNADFYGTEPSLRLTKKTVKFRRNFCVIVMCVICSNLLCEGICGRIPSDPSGSTHKRAKKSSNNSNHKLFRSYDKKLGLRGDLTYKEFQNYRLSGTFVANDEINHYCVNCLNLKCKGCQNSSSDSQKENLKLKLKLEELPTKKELSNYNTTGRFVFEDDLPLINKSKKQSKSNGNFSSSSPKTNDNYSTKSIGGSKHGEFFSHCTDCKFYFRREHIYLKHLETCCPGMNSLICSTCQRHFKSEVGMLKHNCEGIYNLENHQFKNIALDLGSIEYDHFIYILLNHSLPHHWRASSGPKEETLVMEKESVRFRFVISRYKKISNKARLKGEGVKAFKEEIWPIVAKLAIPGEEEEDGDDDDLEEEEDEYELKCAGCHLDNFSTLSELDKHQVECQDYQNVADLWECDGCDKVFSYETEYIKHIKTCEVIEIPEDIRSFYPDDKGRIFCPGCSQVPSLMLLCCGLLSPKKLIKNCKVPPLNPESKVGALERDRFWERIRLSFYHGFGDFESFEKCLEKQKRILGFLITRIRSSSPTKIVWNHWLSKIKMFILAPLHDQFMEEAGSFSDHEERSFKVIEYPFMSESNCKSIIQHLCLQCWDSVCVGCSGEIHQEDYYEKELCTISQTLFFKEFGVICTSEKLFNECTQLGMSLDLKRRASIHELIQYKKGHKIINGTQFEKGGIKKLQATTTTLPLQNNHFNLEKIKKENHRISVLSKAAVSSMPWLIDEECILPD 1286 MNTTPSCSCDIVSSHINKQGTSAIIPTLSCSNERFKISDLSRRNTREYSSSPQCDQGLILLKRLRIADKELKAHEWMSVCGNHKKYLLQDFPLKNHQCGICFNSDQIRLRRVSTKSQDLYKGEVVVGEFVCSECDDLILDGEGDESQHKKITIGQIWVTLDNSFCLINSSVPSLRLLCRGLTNKEPLLNPPELLIKDAIEIRRSLDNANQANKEFITDRMIALGIIPHFSEFRSTADACIRMLHNLLSDGDRKLNKAFWFLKLKLSAFAFLPDENKSGSSKMDQYAFLRKDRICKVLCLACDENECTGCQRPAYPSPISLGDSKGRHLHYLQTTCRCCKKRTSTFHSHPRGNTLRCSSNNCKLNYTDGFKRLCDVDIVFEDDYDVHPQAVCGGCRTYLTSATSPFMSGFPNFYPHNELFCDCDLNFFYANASVQESGSCLSVVMNFSRIPSLTFLAGSILASPAKNNWINTNYLTVKMALEIYQTFMYVHNKKSPDTYEYFKTLALAGVLRYPIKVAFHNKANAFQTVLTILCDSMSHSSRENRTKFRRKLETILNADFYGTEPSLRLTKKTVKFRRNFCVIVMCVICSNLLCEGICGRIPSDPSGSTHKRAKKSSNNSNHKLFRSYDKKLGLRGDLTYKEFQNYRLSGTFVANDEINHYCVNCLNLKCKGCQNSSSDSQKENLKLKLKLEELPTKKELSNYNTTGRFVFEDDLPLINKSKKQSKSNGNFSSSSPKTNDNYSTKSIGGSKHGEFFSHCTDCKFYFRREHIYLKHLETCCPGMNSLICSTCQRHFKSEVGMLKHNCEGIYNLENHQFKNIALDLGSIEYDHFIYILLNHSLPHHWRASSGPKEETLVMEKESVRFRFVISRYKKISNKARLKGEGVKAFKEEIWPIVAKLAIPGEEEEDGDDDDLEEEEDEYELKCAGCHLDNFSTLSELDKHQVECQDYQNVADLWECDGCDKVFSYETEYIKHIKTCEVIEIPEDIRSFYPDDKGRIFCPGCSQVPSLMLLCCGLLSPKKLIKNCKVPPLNPESKVGALERDRFWERIRLSFYHGFGDFESFEKCLEKQKRILGFLITRIRSSSPTKIVWNHWLSKIKMFILAPLHDQFMEEAGSFSDHEERSFKVIEYPFMSESNCKSIIQHLCLQCWDSVCVGCSGEIHQEDYYEKELCTISQTLFFKEFGVICTSEKLFNECTQLGMSLDLKRRASIHELIQYKKGHKIINGTQFEKGGIKKLQATTTTLPLQNNHFNLEKIKKENHRISVLSKAAVSSMPWLIDEECILPD Sbjct: 1 MNTTPSCSCDIVSSHINKQGTSAIIPTLSCSNERFKISDLSRRNTREYSSSPQCDQGLILLKRLRIADKELKAHEWMSVCGNHKKYLLQDFPLKNHQCGICFNSDQIRLRRVSTKSQDLYKGEVVVGEFVCSECDDLILDGEGDESQHKKITIGQIWVTLDNSFCLINSSVPSLRLLCRGLTNKEPLLNPPELLIKDAIEIRRSLDNANQANKEFITDRMIALGIIPHFSEFRSTADACIRMLHNLLSDGDRKLNKAFWFLKLKLSAFAFLPDENKSGSSKMDQYAFLRKDRICKVLCLACDENECTGCQRPAYPSPISLGDSKGRHLHYLQTTCRCCKKRTSTFHSHPRGNTLRCSSNNCKLNYTDGFKRLCDVDIVFEDDYDVHPQAVCGGCRTYLTSATSPFMSGFPNFYPHNELFCDCDLNFFYANASVQESGSCLSVVMNFSRIPSLTFLAGSILASPAKNNWINTNYLTVKMALEIYQTFMYVHNKKSPDTYEYFKTLALAGVLRYPIKVAFHNKANAFQTVLTILCDSMSHSSRENRTKFRRKLETILNADFYGTEPSLRLTKKTVKFRRNFCVIVMCVICSNLLCEGICGRIPSDPSGSTHKRAKKSSNNSNHKLFRSYDKKLGLRGDLTYKEFQNYRLSGTFVANDEINHYCVNCLNLKCKGCQNSSSDSQKENLKLKLKLEELPTKKELSNYNTTGRFVFEDDLPLINKSKKQSKSNGNFSSSSPKTNDNYSTKSIGGSKHGEFFSHCTDCKFYFRREHIYLKHLETCCPGMNSLICSTCQRHFKSEVGMLKHNCEGIYNLENHQFKNIALDLGSIEYDHFIYILLNHSLPHHWRASSGPKEETLVMEKESVRFRFVISRYKKISNKARLKGEGVKAFKEEIWPIVAKLAIPGEEEEDGDDDDLEEEEDEYELKCAGCHLDNFSTLSELDKHQVECQDYQNVADLWECDGCDKVFSYETEYIKHIKTCEVIEIPEDIRSFYPDDKGRIFCPGCSQVPSLMLLCCGLLSPKKLIKNCKVPPLNPESKVGALERDRFWERIRLSFYHGFGDFESFEKCLEKQKRILGFLITRIRSSSPTKIVWNHWLSKIKMFILAPLHDQFMEEAGSFSDHEERSFKVIEYPFMSESNCKSIIQHLCLQCWDSVCVGCSGEIHQEDYYEKELCTISQTLFFKEFGVICTSEKLFNECTQLGMSLDLKRRASIHELIQYKKGHKIINGTQFEKGGIKKLQATTTTLPLQNNHFNLEKIKKENHRISVLSKAAVSSMPWLIDEECILPD 1286 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000106 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000106 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000000106 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000106 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000106 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000106 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000106 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s101:146626..151738- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000106-682872 ID=EMLSAG00000000106-682872|Name=EMLSAG00000000106|organism=Lepeophtheirus salmonis|type=gene|length=5113bp|location=Sequence derived from alignment at LSalAtl2s101:146626..151738- (Lepeophtheirus salmonis)back to top Add to Basket
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