EMLSAG00000000131, EMLSAG00000000131-682897 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000131
Unique NameEMLSAG00000000131-682897
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000131 vs. C. finmarchicus
Match: gi|592913786|gb|GAXK01044589.1| (TSA: Calanus finmarchicus comp242954_c1_seq5 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.415e-1
Identity = 17/38 (44.74%), Postives = 27/38 (71.05%), Query Frame = 0 
Query:   13 LTPWEKITIMSIAASAVGFTLLLVVCIVGRHCWINDIL 50
            L PW K+ +M+ AA+AV  T+L+VVC VG  C + +++
Sbjct:  415 LDPWNKVMVMAGAAAAVAITILMVVCFVGEGCLVYEVI 528
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BLAST of EMLSAG00000000131 vs. C. finmarchicus
Match: gi|592913788|gb|GAXK01044587.1| (TSA: Calanus finmarchicus comp242954_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.397e-1
Identity = 17/38 (44.74%), Postives = 27/38 (71.05%), Query Frame = 0 
Query:   13 LTPWEKITIMSIAASAVGFTLLLVVCIVGRHCWINDIL 50
            L PW K+ +M+ AA+AV  T+L+VVC VG  C + +++
Sbjct: 1462 LDPWNKVMVMAGAAAAVAITILMVVCFVGEGCLVYEVI 1575
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BLAST of EMLSAG00000000131 vs. C. finmarchicus
Match: gi|592913790|gb|GAXK01044585.1| (TSA: Calanus finmarchicus comp242954_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.406e-1
Identity = 17/38 (44.74%), Postives = 27/38 (71.05%), Query Frame = 0 
Query:   13 LTPWEKITIMSIAASAVGFTLLLVVCIVGRHCWINDIL 50
            L PW K+ +M+ AA+AV  T+L+VVC VG  C + +++
Sbjct: 1504 LDPWNKVMVMAGAAAAVAITILMVVCFVGEGCLVYEVI 1617
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BLAST of EMLSAG00000000131 vs. C. finmarchicus
Match: gi|592913787|gb|GAXK01044588.1| (TSA: Calanus finmarchicus comp242954_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.739e-1
Identity = 17/38 (44.74%), Postives = 27/38 (71.05%), Query Frame = 0 
Query:   13 LTPWEKITIMSIAASAVGFTLLLVVCIVGRHCWINDIL 50
            L PW K+ +M+ AA+AV  T+L+VVC VG  C + +++
Sbjct: 1104 LDPWNKVMVMAGAAAAVAITILMVVCFVGEGCLVYEVI 1217
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BLAST of EMLSAG00000000131 vs. C. finmarchicus
Match: gi|592913789|gb|GAXK01044586.1| (TSA: Calanus finmarchicus comp242954_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.873e-1
Identity = 17/38 (44.74%), Postives = 27/38 (71.05%), Query Frame = 0 
Query:   13 LTPWEKITIMSIAASAVGFTLLLVVCIVGRHCWINDIL 50
            L PW K+ +M+ AA+AV  T+L+VVC VG  C + +++
Sbjct: 1495 LDPWNKVMVMAGAAAAVAITILMVVCFVGEGCLVYEVI 1608
[Close]
BLAST of EMLSAG00000000131 vs. C. finmarchicus
Match: gi|592892885|gb|GAXK01065490.1| (TSA: Calanus finmarchicus comp5668_c21_seq27 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 1.968e+0
Identity = 14/43 (32.56%), Postives = 24/43 (55.81%), Query Frame = 0 
Query:   31 FTLLLVVCIVGRHCWINDILRKRG----------NINVDIYVL 63
            F L++ VC +GR   I +++ ++G          NI++DIY L
Sbjct:  403 FALMMFVCFIGRSSLIFNLVYQKGVLHIEFLHRLNISLDIYCL 531
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BLAST of EMLSAG00000000131 vs. C. finmarchicus
Match: gi|592892898|gb|GAXK01065477.1| (TSA: Calanus finmarchicus comp5668_c21_seq14 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.258e+0
Identity = 14/43 (32.56%), Postives = 24/43 (55.81%), Query Frame = 0 
Query:   31 FTLLLVVCIVGRHCWINDILRKRG----------NINVDIYVL 63
            F L++ VC +GR   I +++ ++G          NI++DIY L
Sbjct:  403 FALMMFVCFIGRSSLIFNLVYQKGVLHIEFLHRLNISLDIYCL 531
[Close]
BLAST of EMLSAG00000000131 vs. C. finmarchicus
Match: gi|592892899|gb|GAXK01065476.1| (TSA: Calanus finmarchicus comp5668_c21_seq13 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.260e+0
Identity = 14/43 (32.56%), Postives = 24/43 (55.81%), Query Frame = 0 
Query:   31 FTLLLVVCIVGRHCWINDILRKRG----------NINVDIYVL 63
            F L++ VC +GR   I +++ ++G          NI++DIY L
Sbjct:  403 FALMMFVCFIGRSSLIFNLVYQKGVLHIEFLHRLNISLDIYCL 531
[Close]
BLAST of EMLSAG00000000131 vs. C. finmarchicus
Match: gi|592834901|gb|GAXK01122643.1| (TSA: Calanus finmarchicus comp3624488_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.059e+0
Identity = 13/36 (36.11%), Postives = 21/36 (58.33%), Query Frame = 0 
Query:   29 VGFTLLLVVCIVGR--HCWINDILRKRGNINVDIYV 62
            VGFTLL    I+    H W+  ++ K  N+N+ I++
Sbjct:  951 VGFTLLHDFVILDNISHQWVEKVITKIENVNISIHI 1058
[Close]
BLAST of EMLSAG00000000131 vs. C. finmarchicus
Match: gi|592841933|gb|GAXK01115611.1| (TSA: Calanus finmarchicus comp4122163_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 5.676e+0
Identity = 14/35 (40.00%), Postives = 18/35 (51.43%), Query Frame = 0 
Query:   11 PGLTPWEKITIMSIAASAVGFTLLLVVCIV-GRHC 44
              L    K+  + I  S V F LLL+ C+V  RHC
Sbjct:  108 SSLLQNSKLKSLPILMSMVAFCLLLISCLVMSRHC 212
[Close]
BLAST of EMLSAG00000000131 vs. L. salmonis peptides
Match: EMLSAP00000000131 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1020:102801:104296:-1 gene:EMLSAG00000000131 transcript:EMLSAT00000000131 description:"snap-LSalAtl2s1020-processed-gene-0.52")

HSP 1 Score: 128.257 bits (321), Expect = 3.336e-40
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 
Query:    1 MSVSPTSTIPPGLTPWEKITIMSIAASAVGFTLLLVVCIVGRHCWINDILRKRGNINVDIYVL 63
            MSVSPTSTIPPGLTPWEKITIMSIAASAVGFTLLLVVCIVGRHCWINDILRKRGNINVDIYVL
Sbjct:    1 MSVSPTSTIPPGLTPWEKITIMSIAASAVGFTLLLVVCIVGRHCWINDILRKRGNINVDIYVL 63
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000131 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000131 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 10
Match NameE-valueIdentityDescription
gi|592913786|gb|GAXK01044589.1|1.415e-144.74TSA: Calanus finmarchicus comp242954_c1_seq5 trans... [more]
gi|592913788|gb|GAXK01044587.1|2.397e-144.74TSA: Calanus finmarchicus comp242954_c1_seq3 trans... [more]
gi|592913790|gb|GAXK01044585.1|2.406e-144.74TSA: Calanus finmarchicus comp242954_c1_seq1 trans... [more]
gi|592913787|gb|GAXK01044588.1|2.739e-144.74TSA: Calanus finmarchicus comp242954_c1_seq4 trans... [more]
gi|592913789|gb|GAXK01044586.1|2.873e-144.74TSA: Calanus finmarchicus comp242954_c1_seq2 trans... [more]
gi|592892885|gb|GAXK01065490.1|1.968e+032.56TSA: Calanus finmarchicus comp5668_c21_seq27 trans... [more]
gi|592892898|gb|GAXK01065477.1|2.258e+032.56TSA: Calanus finmarchicus comp5668_c21_seq14 trans... [more]
gi|592892899|gb|GAXK01065476.1|2.260e+032.56TSA: Calanus finmarchicus comp5668_c21_seq13 trans... [more]
gi|592834901|gb|GAXK01122643.1|5.059e+036.11TSA: Calanus finmarchicus comp3624488_c0_seq1 tran... [more]
gi|592841933|gb|GAXK01115611.1|5.676e+040.00TSA: Calanus finmarchicus comp4122163_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000131 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000001313.336e-40100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1020:1028... [more]
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BLAST of EMLSAG00000000131 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000131 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000131 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000131 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1020supercontigLSalAtl2s1020:102801..104296 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s1020-processed-gene-0.52
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000131 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000131EMLSAT00000000131-695978Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1020:102801..104296-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000131-682897 ID=EMLSAG00000000131-682897|Name=EMLSAG00000000131|organism=Lepeophtheirus salmonis|type=gene|length=1496bp|location=Sequence derived from alignment at LSalAtl2s1020:102801..104296- (Lepeophtheirus salmonis)
ATGTCAGTCTCTCCGACGAGCACGATTCCTCCTGGCTTAACACCATGGGA
AAAGATAACCATTATGAGCATTGCAGCCTCCGCTGTAGGATTCACACTTC
TACTTGTTGTTTGTATTGTGGGACGGCACTGTTGGATTAATGATATTCTG
AGGAAAAGAGGCAAGTTATCTTAACTTCGTTCCGGGTCTTTTAATGGGCA
TTATTATGTAACTCATAGGTCAAACGAATGAATTAATTTGCCCTTAATAT
CTATCATGTGAGCAAGTCCTTTATGAACTTACATAGTTATATACAATCAT
TTATACAATGAAAGGCCAATTTTGAGATGAACAGTAATCTTTTAGAGTTA
TCTCAGTAACAGTTGAAGAATGATACAATCTATTATTTCGGTAGTAATGT
ATTTTCTTTAATTATATAAAGTTGTATCTCATAGTGCGATTGTATTTTCT
CAGATTTTGTGAACTTGCATTCTTTTATTCTTTTCTTTTTTGACCAAATA
GAACCTATTTTTTCTATGAGTAGAACAGTTGTGAAATCAAAGATATAATC
ATGATATTATTTTCTTCAAAAATTAATAAAAGTTGAAAGCATAAAATAAG
TAGATGAATCCAAAAGACTTTTATAATTCATTCAGACAAAGTCCTAGAGA
TGGCACTACTGGGGCGTATCGAGGTTATTTTTATTTAGTAGTATCCCTTG
GAAGAAAAGACACTCATTTTAAGCCAGTTCGGTCTATTTATTTCTCTTTG
GAATTCGTTTGAATCGAGGAATAGGCTGGAAAGATTATGACGACTGTTTT
TTTGGATTCACAAGGAATAATAATCGACCATCTGGAAAAGGGTAAAACTA
TTAGAGGGGCTTATTATTTATTGTTATTGAACTGTTTGATAACCAAGCTA
GAAGAAAAATGCCCACGATTGGCCTACAAAATTAACTTTCCATCACGACA
ATAAACCAGCTCATACCTCAGCAGTTGTGGTCGCTAAATTAATCTCAATA
AGGTTCAAACTAGATGTGTCCACAGTACTAGCAATCTCATACACCTTTTA
CTTTTCTGTGATCCATCACTTTATCATGGATTTTATCAATTATTTCTGGA
TTAGTAACCTCAACAGGGCGTCCATAACGTTCAGCGCCACTTGCACCCAT
ATGGCCAATTGAAATTTATAACCACTTATAGACTGTTTTTATAGATGGTA
CAGAGTCCTTAGACAGTTTATTAAGCTTTTTTAGTCTCCTGAGGCGTTTT
GCCTTTCATAAAATAATGTACAATCAACACACAAAATTTTTTTTCGTCCA
ATTTTTGAAAATCACTCCACTTCCTCGATTCAAACAAATGTCAAACAGAA
AGAAATATACCGATCTGGCTGAAAAAAATAACCTCAATACGTGCCATTTG
TGCCATCTCTGAGACTTTGCATATACTTTTCAAACAACTTTATATATTTA
TATACATATTTATCATAGCATCAACGTGGATATATATGTTTTGTAG
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