EMLSAG00000000172, EMLSAG00000000172-682938 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000172
Unique NameEMLSAG00000000172-682938
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000172 vs. C. finmarchicus
Match: gi|592756340|gb|GAXK01198073.1| (TSA: Calanus finmarchicus comp2905007_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 8.560e-2
Identity = 15/49 (30.61%), Postives = 26/49 (53.06%), Query Frame = 0 
Query:    8 ENSDGSVLPVNELPIVTAIGFTGSVQRGLIFDYDRRRVFYPLGKTIVLR 56
            E S G ++   +L  +   GF+GS +  L       R+ +PLG ++V+R
Sbjct:  270 ETSSGEIMVTKQLQELHTTGFSGSEKNCLKLLTSPMRMVFPLGSSLVVR 416
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BLAST of EMLSAG00000000172 vs. L. salmonis peptides
Match: EMLSAP00000000172 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1025:58623:58919:-1 gene:EMLSAG00000000172 transcript:EMLSAT00000000172 description:"snap_masked-LSalAtl2s1025-processed-gene-0.24")

HSP 1 Score: 176.022 bits (445), Expect = 2.303e-58
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 
Query:    1 MADKILLENSDGSVLPVNELPIVTAIGFTGSVQRGLIFDYDRRRVFYPLGKTIVLRSDASFTNYSSEECKSEKEYSHNGCEESLD 85
            MADKILLENSDGSVLPVNELPIVTAIGFTGSVQRGLIFDYDRRRVFYPLGKTIVLRSDASFTNYSSEECKSEKEYSHNGCEESLD
Sbjct:    1 MADKILLENSDGSVLPVNELPIVTAIGFTGSVQRGLIFDYDRRRVFYPLGKTIVLRSDASFTNYSSEECKSEKEYSHNGCEESLD 85
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000172 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000172 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592756340|gb|GAXK01198073.1|8.560e-230.61TSA: Calanus finmarchicus comp2905007_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000172 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000001722.303e-58100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1025:5862... [more]
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BLAST of EMLSAG00000000172 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000172 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000172 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000172 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1025supercontigLSalAtl2s1025:58623..58919 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1025-processed-gene-0.24
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000172 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000172EMLSAT00000000172-696019Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1025:58623..58919-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000172-682938 ID=EMLSAG00000000172-682938|Name=EMLSAG00000000172|organism=Lepeophtheirus salmonis|type=gene|length=297bp|location=Sequence derived from alignment at LSalAtl2s1025:58623..58919- (Lepeophtheirus salmonis)
ATGGCGGATAAAATACTGCTCGAGAATTCTGACGGYTCTGTTTTACCTGT
TAATGAACTACCGATTGTAACTGCCATCGGATTTACGGGAAGTGTACAAA
GAGGACTTATTTTTGATTATGATCGACGTCGCGTCTTTTATCCTCTTGGA
AAGACCATTGTTCTACGATCCGATGCGTCTTTTACAAATTATTCTTCAGA
GGAATGTAAAAGTGGTAAAGTATATAATAATTAATGTAAATACATATTTA
TAGAAAAAGAATATAGTCATAATGGGTGTGAAGAGTCTTTAGACTAG
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