EMLSAG00000000262, EMLSAG00000000262-683028 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000262
Unique NameEMLSAG00000000262-683028
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:Rpl17 "ribosomal protein L17" species:10090 "Mus musculus" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0044822 "poly(A) RNA binding" evidence=ISO] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 MGI:MGI:2448270 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 eggNOG:COG0091 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 HOVERGEN:HBG000955 HAMAP:MF_01331_A ChiTaRS:RPL17 EMBL:AK011133 EMBL:AK011132 UniGene:Mm.276337 ProteinModelPortal:Q9CPR4 SMR:Q9CPR4 IntAct:Q9CPR4 MINT:MINT-1870116 PhosphoSite:Q9CPR4 PaxDb:Q9CPR4 PRIDE:Q9CPR4 InParanoid:Q9CPR4 PRO:PR:Q9CPR4 CleanEx:MM_RPL17 Genevestigator:Q9CPR4 Uniprot:Q9CPR4)

HSP 1 Score: 41.5874 bits (96), Expect = 8.441e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0 
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQ 155
[Close]
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RPL17 "Uncharacterized protein" species:9823 "Sus scrofa" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 Gene3D:3.90.470.10 SUPFAM:SSF54843 OMA:MHIRKAN PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 OrthoDB:EOG70GMHF TreeFam:TF300042 EMBL:CU915343 Ensembl:ENSSSCT00000027450 Uniprot:I3LT81)

HSP 1 Score: 41.5874 bits (96), Expect = 8.504e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0 
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:  124 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQ 154
[Close]
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RPL17 "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 OrthoDB:EOG70GMHF TreeFam:TF300042 HAMAP:MF_01331_A EMBL:AC202795 Ensembl:ENSGALT00000004252 Uniprot:F1NG53)

HSP 1 Score: 41.5874 bits (96), Expect = 8.908e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0 
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:  126 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQ 156
[Close]
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RGD1359290 "Ac2-210" species:10116 "Rattus norvegicus" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 RGD:1359290 GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 Gene3D:3.90.470.10 SUPFAM:SSF54843 eggNOG:COG0091 HOGENOM:HOG000205045 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 HOVERGEN:HBG000955 OrthoDB:EOG70GMHF TreeFam:TF300042 EMBL:AABR06065838 EMBL:AY321338 RefSeq:NP_001041363.1 UniGene:Rn.110865 STRING:10116.ENSRNOP00000034767 Ensembl:ENSRNOT00000029782 GeneID:360649 KEGG:rno:360649 UCSC:RGD:1359290 CTD:360649 InParanoid:Q7TPJ7 NextBio:673611 Genevestigator:Q7TPJ7 Uniprot:Q7TPJ7)

HSP 1 Score: 41.5874 bits (96), Expect = 1.310e-4
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0 
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:   94 MRRRTYRAHGRINLYMSSPCHIEMILTEKEQ 124
[Close]
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RGD1359290 "Ribosomal_L22 domain containing protein RGD1359290" species:10116 "Rattus norvegicus" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 RGD:1359290 GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 Gene3D:3.90.470.10 SUPFAM:SSF54843 eggNOG:COG0091 HOGENOM:HOG000205045 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 HOVERGEN:HBG000955 OrthoDB:EOG70GMHF TreeFam:TF300042 EMBL:AABR06065838 EMBL:AY321338 RefSeq:NP_001041363.1 UniGene:Rn.110865 STRING:10116.ENSRNOP00000034767 Ensembl:ENSRNOT00000029782 GeneID:360649 KEGG:rno:360649 UCSC:RGD:1359290 CTD:360649 InParanoid:Q7TPJ7 NextBio:673611 Genevestigator:Q7TPJ7 Uniprot:Q7TPJ7)

HSP 1 Score: 41.5874 bits (96), Expect = 1.310e-4
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0 
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:   94 MRRRTYRAHGRINLYMSSPCHIEMILTEKEQ 124
[Close]
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592799812|gb|GAXK01154756.1| (TSA: Calanus finmarchicus comp1855702_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 8.587e+0
Identity = 12/36 (33.33%), Postives = 20/36 (55.56%), Query Frame = 0 
Query:   27 VKKEKAFFNVPSDTPEKEKVSIKNQKLQMNNLSAHD 62
            +KK+K     P   P+K+KV +KN  ++    + HD
Sbjct:    5 IKKQKVMLKKP*VIPKKQKVILKNLVIKAEPEAPHD 112
[Close]
BLAST of EMLSAG00000000262 vs. L. salmonis peptides
Match: EMLSAP00000000262 (pep:novel supercontig:LSalAtl2s:LSalAtl2s103:1234959:1237071:-1 gene:EMLSAG00000000262 transcript:EMLSAT00000000262 description:"snap_masked-LSalAtl2s103-processed-gene-12.0")

HSP 1 Score: 138.658 bits (348), Expect = 2.880e-44
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQMNNLSAHDEDNEI 67
            MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQMNNLSAHDEDNEI
Sbjct:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQMNNLSAHDEDNEI 67
[Close]
BLAST of EMLSAG00000000262 vs. L. salmonis peptides
Match: EMLSAP00000006484 (pep:novel supercontig:LSalAtl2s:LSalAtl2s354:78083:78928:-1 gene:EMLSAG00000006484 transcript:EMLSAT00000006484 description:"augustus_masked-LSalAtl2s354-processed-gene-0.5")

HSP 1 Score: 65.0846 bits (157), Expect = 8.312e-15
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0 
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPE 42
            M RRTY A  RIN Y+S PC IEVVLV+KE+AF  VPSDTPE
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEVVLVEKEQAFSKVPSDTPE 166
[Close]
BLAST of EMLSAG00000000262 vs. nr
Match: gi|225714586|gb|ACO13139.1| (60S ribosomal protein L17 [Lepeophtheirus salmonis])

HSP 1 Score: 64.6994 bits (156), Expect = 2.264e-11
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0 
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPE 42
            M RRTY A  RIN Y+S PC IEVVLV+KE+AF  VPSDTPE
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEVVLVEKEQAFSKVPSDTPE 166
[Close]
BLAST of EMLSAG00000000262 vs. nr
Match: gi|225711442|gb|ACO11567.1| (60S ribosomal protein L17 [Caligus rogercresseyi])

HSP 1 Score: 59.3066 bits (142), Expect = 3.008e-9
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 0 
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPE 42
            M RRTY A  RIN Y+S PC IEVVL++KE++F  VP++TPE
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEVVLLEKEQSFSKVPTETPE 166
[Close]
BLAST of EMLSAG00000000262 vs. nr
Match: gi|225718404|gb|ACO15048.1| (60S ribosomal protein L17 [Caligus clemensi])

HSP 1 Score: 55.8398 bits (133), Expect = 6.220e-8
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 0 
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPE 42
            M RRTY A  RIN Y+S PC IEVVLV+KE+AF  V  + PE
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEVVLVEKEQAFSKVAPEAPE 166
[Close]
BLAST of EMLSAG00000000262 vs. nr
Match: gi|748384555|gb|KIH58838.1| (hypothetical protein ANCDUO_10947 [Ancylostoma duodenale])

HSP 1 Score: 50.8322 bits (120), Expect = 5.542e-7
Identity = 25/55 (45.45%), Postives = 32/55 (58.18%), Query Frame = 0 
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQM 55
            M RRTY A  RIN Y+S PC IEV+L +KE        D P  +K S + Q+ Q+
Sbjct:    1 MRRRTYRAHGRINPYMSSPCHIEVILTEKEDVVAKPSDDIPRAKKESKRKQRRQL 55
[Close]
BLAST of EMLSAG00000000262 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold505_size153196-snap-gene-0.21 (protein:Tk06001 transcript:maker-scaffold505_size153196-snap-gene-0.21-mRNA-1 annotation:"60s ribosomal protein l17")

HSP 1 Score: 44.2838 bits (103), Expect = 2.496e-7
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 0 
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAF 33
            M RRTY A  RIN Y+S PC IEV LV+KE+ F
Sbjct:  242 MRRRTYRAHGRINPYMSSPCHIEVCLVEKEQTF 274
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000262 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 25
Match NameE-valueIdentityDescription
-8.441e-558.06symbol:Rpl17 "ribosomal protein L17" species:10090... [more]
-8.504e-558.06symbol:RPL17 "Uncharacterized protein" species:982... [more]
-8.908e-558.06symbol:RPL17 "Uncharacterized protein" species:903... [more]
-1.310e-458.06symbol:RGD1359290 "Ac2-210" species:10116 "Rattus ... [more]
-1.310e-458.06symbol:RGD1359290 "Ribosomal_L22 domain containing... [more]

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BLAST of EMLSAG00000000262 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 11
Match NameE-valueIdentityDescription
gi|592799812|gb|GAXK01154756.1|8.587e+033.33TSA: Calanus finmarchicus comp1855702_c0_seq1 tran... [more]

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BLAST of EMLSAG00000000262 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000002622.880e-44100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s103:12349... [more]
EMLSAP000000064848.312e-1571.43pep:novel supercontig:LSalAtl2s:LSalAtl2s354:78083... [more]
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BLAST of EMLSAG00000000262 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000262 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000262 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 4
Match NameE-valueIdentityDescription
gi|225714586|gb|ACO13139.1|2.264e-1171.4360S ribosomal protein L17 [Lepeophtheirus salmonis... [more]
gi|225711442|gb|ACO11567.1|3.008e-961.9060S ribosomal protein L17 [Caligus rogercresseyi][more]
gi|225718404|gb|ACO15048.1|6.220e-861.9060S ribosomal protein L17 [Caligus clemensi][more]
gi|748384555|gb|KIH58838.1|5.542e-745.45hypothetical protein ANCDUO_10947 [Ancylostoma duo... [more]
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BLAST of EMLSAG00000000262 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold505_size153196-snap-gene-0.212.496e-763.64protein:Tk06001 transcript:maker-scaffold505_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s103supercontigLSalAtl2s103:1234959..1237071 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s103-processed-gene-12.0
Biotypeprotein_coding
EvidenceIEA
Note60S ribosomal protein L17 [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000262 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000262EMLSAT00000000262-696109Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s103:1234959..1237071-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000262-683028 ID=EMLSAG00000000262-683028|Name=EMLSAG00000000262|organism=Lepeophtheirus salmonis|type=gene|length=2113bp|location=Sequence derived from alignment at LSalAtl2s103:1234959..1237071- (Lepeophtheirus salmonis)
ATGATACGTCGTACCTACCTTGCTCTCAGAAGAATCAATTCTTATTTGAG
CTATCCCTGCCAGATCGAAGTCGTTTTGGTTAAAAAGGAGAAAGCTTTCT
TCAATGTTCCCTCTGATACTCCCGAAAAGGAGAAGGTATCAATAAAGAAT
CAGAAGCTTCAAGTAAATACATAGATCGGAAGATATTACATAATCCTGAT
ACATTTTATTCTGTTAAATATATATCTAAAACGATTAAACAAATATCACT
ATCCTTACTTTGACACCAAGCTGGACTCAATAAAGCGGTTAACTGATGAT
TTATTTTTTAAGTCAATGCATAAATTTTCTCGATATTTTTTCTAAAAAGA
TTGTTCATTTTATTTTAGTTTTCATTGTGAATGAAACTTTGGAAACATTT
AATTGGCTTACTAAATAAGGTACCCTCTTTCCCCCCCCTTAATATCAACA
TATAGAATAATATAAAAACAAACAACTCTTGTTATACAAATTTATTCATC
AGACCAAGGACACCATAGATGGAGGGCAAATAAATCGATTGTGCTTGTGC
TTCTTAACACAGGAATGAGTTATCACGAGATCTCCTTCAATGTCCCCAAC
TCTAAGAGCATCATAACCCCTTTAATAAACTGAAAGACGAGAAAAAGAGG
CTTKAAAGGKAGCCAAAAGGTAAAAAGCCCAAAAAAAAACTCCAAAGTGG
TGCAGGGACAACTTGTCAAATTTCTATCCTGGCCTCTGTCTTCACCAGAT
TGGAATCTGTGCCATCGAGAGAAAAGATTGGAGCACCTCCCATGTGAATG
TGGATACCCTAAAGGCTGCTGTTGAGGGKTCTTGTACTTTATGAGAACAG
TAGATTATATGAGGACAGTTTTGTATCTAGATATTTGCTGCCTTCATATA
GTCCAAAAAAGGTAATATATGGCGACAGTAGATTATAGAAATACCTTAAC
TGGTTGGAACTCTTGATGTTGTCTCCATATAGTACACTATTCCCATAAAG
TCCGGCTTGAGTGAAAACAAAACTACAAACAAAGAATTATTGCGTGTTTT
GTTAATAAATATTTGTATCCAACATTTGACTTGAATAATGAAGTAGAAAA
TTAATATTTGTTTTTATTTTTGTTTTTTACAAATAAAATGGATTTTTAAT
CGAATTGAATTGTTTACTTAAATGCAATGCCTTTTTTTTTTTTTATCGTT
TTAAGTCTATTTGTATTCATCAAATGGCACTCTTAGACTTCATGTGTGAC
TATACATATGGCCAATCAACATTAAAGCAAGTTAGAAGGAGTTTTCTTCT
TGCCTGAGAAGATTTTCACAGTCGACAGATGACTCTTCAAGTAATGACGG
ACTTTTTTGCATCGCCATAAGGGCTTTATCTTGTCGGTGAGGAGATATTT
TGGAGTCCTGACAAAGCTCTTAAGGCCTATGGCATCATGAACTGATGATG
ATTTTGTTCATGTTGAACTTGTCAGCCAAACGCCGCATTGATGCTCTTTG
ATCTTCCTTAATGTTGGCCTCCAGGGACTTGAGAAATATTTCATCTCGCT
TCTAACCATTTCCTCCACTTCCTGTATTCCTTTTGATTCCTTTTCCATTC
TCCTTGGGCACTGTCCTCACAGTCACGCCGACAAAAATATTATTTTTGGA
TCAACATCCGCGTGGAGAAGATCCGAAACCCTTTGCCTTTCGGATTCTTG
TTAACTCATTTATCGTCAAATTTTGATCAAATCTAAACAATGCGTAATAA
AAAAAGCACATGGATCGAACCCCCCCCCCCCCCACGTTCTTGAGACGTTG
CCTGAACACTTAAGTAGGGCATGAAAATTCATTTGATTGATGTTGCAAAT
TTCCATTTCGCACTCTGTTATGATTTTGTACTAAGTAACAATTAAATACA
ATGTTTTAAACCTAAAATAAATATATTTAGATTGAATAATATTTGACCAT
TTTTTAATATAGGCCAATAAGTAATAAATATTTTTAATATGGCATATTTT
ACTTTTAATAATACCTATAATTTCAGATTTTGTATTAAAAATAATAATAA
TATATTTTTGCAGTTTTAAAGATGAACAACTTGAGTGCACATGATGAGGA
TAATGAAATATAA
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