EMLSAG00000000262, EMLSAG00000000262-683028 (gene) Lepeophtheirus salmonis

Overview


Name	EMLSAG00000000262
Unique Name	EMLSAG00000000262-683028
Type	gene
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:rpl-17 species:6239 "Caenorhabditis elegans" [GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode larval development" evidence=IMP] [GO:0007413 "axonal fasciculation" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 EMBL:FO081800 Gene3D:3.90.470.10 SUPFAM:SSF54843 eggNOG:COG0091 HOGENOM:HOG000205045 KO:K02880 OMA:MHIRKAN PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 OrthoDB:EOG70GMHF HAMAP:MF_01331_A RefSeq:NP_740781.1 RefSeq:NP_740782.1 UniGene:Cel.9029 ProteinModelPortal:Q9BL19 SMR:Q9BL19 BioGrid:37191 DIP:DIP-26651N MINT:MINT-1111583 PaxDb:Q9BL19 PRIDE:Q9BL19 EnsemblMetazoa:Y48G8AL.8a.1 EnsemblMetazoa:Y48G8AL.8a.2 GeneID:171692 KEGG:cel:CELE_Y48G8AL.8 UCSC:Y48G8AL.8b CTD:171692 WormBase:Y48G8AL.8a WormBase:Y48G8AL.8b InParanoid:Q9BL19 NextBio:872327 PRO:PR:Q9BL19 Uniprot:Q9BL19)

HSP 1 Score: 45.4394 bits (106), Expect = 3.090e-6
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 0

Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSD--TPEKEKVSIKNQKLQM 55
            RRTY A  RIN Y+S PC IEV+L +KE    + P+D   P+ +K S + Q+ Q+
Sbjct:  129 RRTYRAHGRINPYMSSPCHIEVILAEKED-VVSKPTDDAAPKVKKESKRKQRRQL 182

[Close]

BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:rpl-17 "60S ribosomal protein L17" species:6239 "Caenorhabditis elegans" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 EMBL:FO081800 Gene3D:3.90.470.10 SUPFAM:SSF54843 eggNOG:COG0091 HOGENOM:HOG000205045 KO:K02880 OMA:MHIRKAN PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 OrthoDB:EOG70GMHF HAMAP:MF_01331_A RefSeq:NP_740781.1 RefSeq:NP_740782.1 UniGene:Cel.9029 ProteinModelPortal:Q9BL19 SMR:Q9BL19 BioGrid:37191 DIP:DIP-26651N MINT:MINT-1111583 PaxDb:Q9BL19 PRIDE:Q9BL19 EnsemblMetazoa:Y48G8AL.8a.1 EnsemblMetazoa:Y48G8AL.8a.2 GeneID:171692 KEGG:cel:CELE_Y48G8AL.8 UCSC:Y48G8AL.8b CTD:171692 WormBase:Y48G8AL.8a WormBase:Y48G8AL.8b InParanoid:Q9BL19 NextBio:872327 PRO:PR:Q9BL19 Uniprot:Q9BL19)

HSP 1 Score: 45.4394 bits (106), Expect = 3.090e-6
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 0

Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSD--TPEKEKVSIKNQKLQM 55
            RRTY A  RIN Y+S PC IEV+L +KE    + P+D   P+ +K S + Q+ Q+
Sbjct:  129 RRTYRAHGRINPYMSSPCHIEVILAEKED-VVSKPTDDAAPKVKKESKRKQRRQL 182

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BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RPL17 "60S ribosomal protein L17" species:9606 "Homo sapiens" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 HAMAP:MF_01331_A EMBL:AC100778 HGNC:HGNC:10307 ProteinModelPortal:J3KRX5 Ensembl:ENST00000583637 NextBio:35535710 ArrayExpress:J3KRX5 Uniprot:J3KRX5)

HSP 1 Score: 45.0542 bits (105), Expect = 4.737e-6
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 0

Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIK 49
            M RRTY A  RIN Y+S PC IE++L +KE+       +  +K+K+S K
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQK 173

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BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RPL17 "60S ribosomal protein L17" species:9606 "Homo sapiens" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 HAMAP:MF_01331_A EMBL:AC100778 HGNC:HGNC:10307 ProteinModelPortal:J3QQT2 Ensembl:ENST00000578532 NextBio:35536834 ArrayExpress:J3QQT2 Uniprot:J3QQT2)

HSP 1 Score: 44.2838 bits (103), Expect = 7.530e-6
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 0

Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVS 47
            M RRTY A  RIN Y+S PC IE++L +KE+       +  +K+K+S
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKIS 171

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BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RpL17 "60S ribosomal protein L17" species:7245 "Drosophila yakuba" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575 "cellular_component" evidence=ND] [GO:0008150 "biological_process" evidence=ND] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 EMBL:CM000162 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 eggNOG:COG0091 KO:K02880 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 OrthoDB:EOG70GMHF EMBL:AY231666 EMBL:AY232017 RefSeq:XP_002099933.1 ProteinModelPortal:Q6XJ13 SMR:Q6XJ13 EnsemblMetazoa:FBtr0262966 GeneID:6524064 KEGG:dya:Dyak_GE16448 FlyBase:FBgn0068331 Uniprot:Q6XJ13)

HSP 1 Score: 44.2838 bits (103), Expect = 1.102e-5
Identity = 19/39 (48.72%), Postives = 24/39 (61.54%), Query Frame = 0

Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTP 41
            RRTY A  RIN Y+S PC +EV+L +KE+       D P
Sbjct:  127 RRTYRAHGRINPYMSSPCHVEVILTEKEEVVSKATDDEP 165

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BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RpL17 "Ribosomal protein L17" species:7227 "Drosophila melanogaster" [GO:0003735 "structural constituent of ribosome" evidence=ISS] [GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0007052 "mitotic spindle organization" evidence=IMP] [GO:0000022 "mitotic spindle elongation" evidence=IMP] [GO:0051298 "centrosome duplication" evidence=IMP] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 EMBL:AE014298 GO:GO:0003735 GO:GO:0051298 GO:GO:0000022 GO:GO:0015934 PDB:3J39 PDBsum:3J39 Gene3D:3.90.470.10 SUPFAM:SSF54843 eggNOG:COG0091 KO:K02880 OMA:MHIRKAN PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 CTD:6139 OrthoDB:EOG70GMHF EMBL:AY060845 RefSeq:NP_572346.1 RefSeq:NP_727118.1 RefSeq:NP_727119.1 RefSeq:NP_727120.1 UniGene:Dm.7261 ProteinModelPortal:Q9W3W8 SMR:Q9W3W8 BioGrid:58099 IntAct:Q9W3W8 MINT:MINT-330499 STRING:7227.FBpp0070942 PaxDb:Q9W3W8 PRIDE:Q9W3W8 EnsemblMetazoa:FBtr0070980 EnsemblMetazoa:FBtr0070981 EnsemblMetazoa:FBtr0070982 EnsemblMetazoa:FBtr0070983 GeneID:31613 KEGG:dme:Dmel_CG3203 FlyBase:FBgn0029897 InParanoid:Q9W3W8 PhylomeDB:Q9W3W8 ChiTaRS:RPL17 GenomeRNAi:31613 NextBio:774485 PRO:PR:Q9W3W8 Bgee:Q9W3W8 Uniprot:Q9W3W8)

HSP 1 Score: 43.5134 bits (101), Expect = 1.757e-5
Identity = 19/39 (48.72%), Postives = 24/39 (61.54%), Query Frame = 0

Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTP 41
            RRTY A  RIN Y+S PC +EV+L +KE+       D P
Sbjct:  127 RRTYRAHGRINPYMSSPCHVEVILTEKEELVSKATDDEP 165

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BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RpL17 "60S ribosomal protein L17" species:46245 "Drosophila pseudoobscura pseudoobscura" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575 "cellular_component" evidence=ND] [GO:0008150 "biological_process" evidence=ND] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 EMBL:CH379063 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 eggNOG:COG0091 KO:K02880 OMA:MHIRKAN PANTHER:PTHR11593 TIGRFAMs:TIGR01038 OrthoDB:EOG70GMHF RefSeq:XP_001355571.1 ProteinModelPortal:Q29IM3 SMR:Q29IM3 STRING:7237.FBpp0273522 EnsemblMetazoa:FBtr0275084 GeneID:4815497 KEGG:dpo:Dpse_GA16622 FlyBase:FBgn0076637 InParanoid:Q29IM3 Uniprot:Q29IM3)

HSP 1 Score: 43.5134 bits (101), Expect = 1.908e-5
Identity = 19/39 (48.72%), Postives = 24/39 (61.54%), Query Frame = 0

Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTP 41
            RRTY A  RIN Y+S PC +EV+L +KE+       D P
Sbjct:  127 RRTYRAHGRINPYMSSPCHVEVILTEKEEVVSKAVDDEP 165

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BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:R4GH31 "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 RefSeq:XP_003643392.2 Ensembl:ENSGALT00000045235 GeneID:100857334 KEGG:gga:100857334 Uniprot:R4GH31)

HSP 1 Score: 41.5874 bits (96), Expect = 5.854e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0

Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:   87 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQ 117

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BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:LOC607592 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 OrthoDB:EOG70GMHF TreeFam:TF300042 EMBL:AAEX03011013 OMA:NTCETAL Ensembl:ENSCAFT00000015649 Uniprot:J9P4F7)

HSP 1 Score: 41.9726 bits (97), Expect = 6.397e-5
Identity = 23/53 (43.40%), Postives = 32/53 (60.38%), Query Frame = 0

Query:    4 RTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVS---IKNQKL 53
            RTY A  RIN Y+S PC IE++L +KE        +  +K+K+S   +K QKL
Sbjct:  128 RTYRAHGRINPYMSSPCHIEMILTEKEPIVPKPEEEVAQKKKISQRKLKKQKL 180

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BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RPL17-C18orf32 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 Gene3D:3.90.470.10 SUPFAM:SSF54843 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 OrthoDB:EOG70GMHF TreeFam:TF300042 EMBL:AAEX03007599 Ensembl:ENSCAFT00000005201 OMA:NTPRETA Uniprot:J9NUV8)

HSP 1 Score: 41.9726 bits (97), Expect = 6.801e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0

Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:  134 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQ 164

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BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592785796|gb|GAXK01168772.1| (TSA: Calanus finmarchicus comp52_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 45.4394 bits (106), Expect = 1.472e-6
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 0

Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAF 33
            M RRTY A  RIN Y+S PC IE+ LV+KE+AF
Sbjct:  156 MRRRTYRAHGRINPYMSSPCHIEICLVEKEQAF 254

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BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592851707|gb|GAXK01105837.1| (TSA: Calanus finmarchicus comp3760062_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 44.669 bits (104), Expect = 2.811e-6
Identity = 21/41 (51.22%), Postives = 25/41 (60.98%), Query Frame = 0

Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTP 41
            M RRTY A  RIN Y+S PC +EV+L +KE     V  D P
Sbjct:  100 MRRRTYRAHGRINPYMSTPCHLEVILSEKEDVVSKVKDDEP 222

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BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592849740|gb|GAXK01107804.1| (TSA: Calanus finmarchicus comp3992595_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.9726 bits (97), Expect = 1.735e-5
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = 0

Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKE 30
            RRTY A  RIN+Y+S PC +EVVL +KE
Sbjct:  389 RRTYRAHGRINAYMSNPCHVEVVLSEKE 472

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BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592873162|gb|GAXK01084400.1| (TSA: Calanus finmarchicus comp5236245_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 1.304e-4
Identity = 20/58 (34.48%), Postives = 32/58 (55.17%), Query Frame = 0

Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQMNNLSA 60
            RRTY A  RIN Y+S PC +E++L +K +       +   ++K+  + Q+   N  SA
Sbjct:   53 RRTYRAHGRINPYMSSPCHVELILSQKAEPVAKAEEEG--QKKIGRRRQQRLKNGASA 220

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BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592814455|gb|GAXK01140113.1| (TSA: Calanus finmarchicus comp8780814_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.1206 bits (87), Expect = 3.190e-4
Identity = 15/28 (53.57%), Postives = 21/28 (75.00%), Query Frame = 0

Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKE 30
            RRTY A  RIN Y+S PC +E++L +K+
Sbjct:  136 RRTYRAHGRINPYMSSPCHVELILSQKQ 219

[Close]

BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592935984|gb|GAXK01022569.1| (TSA: Calanus finmarchicus comp7731594_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.870e-3
Identity = 14/28 (50.00%), Postives = 19/28 (67.86%), Query Frame = 0

Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKE 30
            RRTY A  RI  Y++ PC IE++L  +E
Sbjct:  261 RRTYRAHGRIGPYMASPCHIELILTPRE 344

[Close]

BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592886996|gb|GAXK01071379.1| (TSA: Calanus finmarchicus comp7339657_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 5.333e-3
Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 0

Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKK 29
            RRTY A  RIN Y++ PC IE+++  K
Sbjct:  146 RRTYRAHGRINPYMASPCHIELIMETK 226

[Close]

BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592757562|gb|GAXK01196851.1| (TSA: Calanus finmarchicus comp5309723_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 8.066e-2
Identity = 15/29 (51.72%), Postives = 19/29 (65.52%), Query Frame = 0

Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKK 29
            M RRTY A  RIN+Y+  P  I +V V+K
Sbjct:  382 MRRRTYRAHGRINAYMRNPTHINLVCVEK 468

[Close]

BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592862549|gb|GAXK01095013.1| (TSA: Calanus finmarchicus comp2108352_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 3.697e-1
Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = 0

Query:    3 RRTYLALRRINSYLSYPCQIEVVL 26
            RRTY A  RI+ + S PC +E++ 
Sbjct:  190 RRTYRAHGRISRFASNPCHVELIC 261

[Close]

BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592874593|gb|GAXK01082969.1| (TSA: Calanus finmarchicus comp656107_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.365e+0
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 0

Query:   41 PEKEKVSIKNQKLQMNNLSAHDE 63
            PE  K  +KNQK Q  +LSA+ E
Sbjct:   72 PESYKYLLKNQKFQTQSLSANPE 140

[Close]

BLAST of EMLSAG00000000262 vs. L. salmonis peptides
Match: EMLSAP00000000262 (pep:novel supercontig:LSalAtl2s:LSalAtl2s103:1234959:1237071:-1 gene:EMLSAG00000000262 transcript:EMLSAT00000000262 description:"snap_masked-LSalAtl2s103-processed-gene-12.0")

HSP 1 Score: 138.658 bits (348), Expect = 2.880e-44
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0

Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQMNNLSAHDEDNEI 67
            MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQMNNLSAHDEDNEI
Sbjct:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQMNNLSAHDEDNEI 67

[Close]

BLAST of EMLSAG00000000262 vs. L. salmonis peptides
Match: EMLSAP00000006484 (pep:novel supercontig:LSalAtl2s:LSalAtl2s354:78083:78928:-1 gene:EMLSAG00000006484 transcript:EMLSAT00000006484 description:"augustus_masked-LSalAtl2s354-processed-gene-0.5")

HSP 1 Score: 65.0846 bits (157), Expect = 8.312e-15
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0

Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPE 42
            M RRTY A  RIN Y+S PC IEVVLV+KE+AF  VPSDTPE
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEVVLVEKEQAFSKVPSDTPE 166

[Close]

BLAST of EMLSAG00000000262 vs. nr
Match: gi|225714586|gb|ACO13139.1| (60S ribosomal protein L17 [Lepeophtheirus salmonis])

HSP 1 Score: 64.6994 bits (156), Expect = 2.264e-11
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0

Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPE 42
            M RRTY A  RIN Y+S PC IEVVLV+KE+AF  VPSDTPE
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEVVLVEKEQAFSKVPSDTPE 166

[Close]

BLAST of EMLSAG00000000262 vs. nr
Match: gi|225711442|gb|ACO11567.1| (60S ribosomal protein L17 [Caligus rogercresseyi])

HSP 1 Score: 59.3066 bits (142), Expect = 3.008e-9
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 0

Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPE 42
            M RRTY A  RIN Y+S PC IEVVL++KE++F  VP++TPE
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEVVLLEKEQSFSKVPTETPE 166

[Close]

BLAST of EMLSAG00000000262 vs. nr
Match: gi|225718404|gb|ACO15048.1| (60S ribosomal protein L17 [Caligus clemensi])

HSP 1 Score: 55.8398 bits (133), Expect = 6.220e-8
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 0

Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPE 42
            M RRTY A  RIN Y+S PC IEVVLV+KE+AF  V  + PE
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEVVLVEKEQAFSKVAPEAPE 166

[Close]

BLAST of EMLSAG00000000262 vs. nr
Match: gi|748384555|gb|KIH58838.1| (hypothetical protein ANCDUO_10947 [Ancylostoma duodenale])

HSP 1 Score: 50.8322 bits (120), Expect = 5.542e-7
Identity = 25/55 (45.45%), Postives = 32/55 (58.18%), Query Frame = 0

Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQM 55
            M RRTY A  RIN Y+S PC IEV+L +KE        D P  +K S + Q+ Q+
Sbjct:    1 MRRRTYRAHGRINPYMSSPCHIEVILTEKEDVVAKPSDDIPRAKKESKRKQRRQL 55

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BLAST of EMLSAG00000000262 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold505_size153196-snap-gene-0.21 (protein:Tk06001 transcript:maker-scaffold505_size153196-snap-gene-0.21-mRNA-1 annotation:"60s ribosomal protein l17")

HSP 1 Score: 44.2838 bits (103), Expect = 2.496e-7
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 0

Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAF 33
            M RRTY A  RIN Y+S PC IEV LV+KE+ F
Sbjct:  242 MRRRTYRAHGRINPYMSSPCHIEVCLVEKEQTF 274

The following BLAST results are available for this feature:

BLAST of EMLSAG00000000262 vs. GO
BLAST of EMLSAG00000000262 vs. C. finmarchicus
BLAST of EMLSAG00000000262 vs. L. salmonis peptides
BLAST of EMLSAG00000000262 vs. SwissProt
BLAST of EMLSAG00000000262 vs. Select Arthropod Genomes
BLAST of EMLSAG00000000262 vs. nr
BLAST of EMLSAG00000000262 vs. Tigriopus kingsejongenis genes

BLAST of EMLSAG00000000262 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 25


Match Name	E-value	Identity	Description
-	3.090e-6	45.45	symbol:rpl-17 species:6239 "Caenorhabditis elegans...	[more]
-	3.090e-6	45.45	symbol:rpl-17 "60S ribosomal protein L17" species:...	[more]
-	4.737e-6	44.90	symbol:RPL17 "60S ribosomal protein L17" species:9...	[more]
-	7.530e-6	44.68	symbol:RPL17 "60S ribosomal protein L17" species:9...	[more]
-	1.102e-5	48.72	symbol:RpL17 "60S ribosomal protein L17" species:7...	[more]
-	1.757e-5	48.72	symbol:RpL17 "Ribosomal protein L17" species:7227 ...	[more]
-	1.908e-5	48.72	symbol:RpL17 "60S ribosomal protein L17" species:4...	[more]
-	5.854e-5	58.06	symbol:R4GH31 "Uncharacterized protein" species:90...	[more]
-	6.397e-5	43.40	symbol:LOC607592 "Uncharacterized protein" species...	[more]
-	6.801e-5	58.06	symbol:RPL17-C18orf32 "Uncharacterized protein" sp...	[more]

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BLAST of EMLSAG00000000262 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 11


Match Name	E-value	Identity	Description
gi\|592785796\|gb\|GAXK01168772.1\|	1.472e-6	63.64	TSA: Calanus finmarchicus comp52_c0_seq1 transcrib...	[more]
gi\|592851707\|gb\|GAXK01105837.1\|	2.811e-6	51.22	TSA: Calanus finmarchicus comp3760062_c0_seq1 tran...	[more]
gi\|592849740\|gb\|GAXK01107804.1\|	1.735e-5	64.29	TSA: Calanus finmarchicus comp3992595_c0_seq1 tran...	[more]
gi\|592873162\|gb\|GAXK01084400.1\|	1.304e-4	34.48	TSA: Calanus finmarchicus comp5236245_c0_seq1 tran...	[more]
gi\|592814455\|gb\|GAXK01140113.1\|	3.190e-4	53.57	TSA: Calanus finmarchicus comp8780814_c0_seq1 tran...	[more]
gi\|592935984\|gb\|GAXK01022569.1\|	1.870e-3	50.00	TSA: Calanus finmarchicus comp7731594_c0_seq1 tran...	[more]
gi\|592886996\|gb\|GAXK01071379.1\|	5.333e-3	51.85	TSA: Calanus finmarchicus comp7339657_c0_seq1 tran...	[more]
gi\|592757562\|gb\|GAXK01196851.1\|	8.066e-2	51.72	TSA: Calanus finmarchicus comp5309723_c0_seq1 tran...	[more]
gi\|592862549\|gb\|GAXK01095013.1\|	3.697e-1	45.83	TSA: Calanus finmarchicus comp2108352_c0_seq1 tran...	[more]
gi\|592874593\|gb\|GAXK01082969.1\|	4.365e+0	52.17	TSA: Calanus finmarchicus comp656107_c0_seq1 trans...	[more]

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BLAST of EMLSAG00000000262 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2


Match Name	E-value	Identity	Description
EMLSAP00000000262	2.880e-44	100.00	pep:novel supercontig:LSalAtl2s:LSalAtl2s103:12349...	[more]
EMLSAP00000006484	8.312e-15	71.43	pep:novel supercontig:LSalAtl2s:LSalAtl2s354:78083...	[more]

BLAST of EMLSAG00000000262 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000000262 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000000262 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 4


Match Name	E-value	Identity	Description
gi\|225714586\|gb\|ACO13139.1\|	2.264e-11	71.43	60S ribosomal protein L17 [Lepeophtheirus salmonis...	[more]
gi\|225711442\|gb\|ACO11567.1\|	3.008e-9	61.90	60S ribosomal protein L17 [Caligus rogercresseyi]	[more]
gi\|225718404\|gb\|ACO15048.1\|	6.220e-8	61.90	60S ribosomal protein L17 [Caligus clemensi]	[more]
gi\|748384555\|gb\|KIH58838.1\|	5.542e-7	45.45	hypothetical protein ANCDUO_10947 [Ancylostoma duo...	[more]

BLAST of EMLSAG00000000262 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1


Match Name	E-value	Identity	Description
maker-scaffold505_size153196-snap-gene-0.21	2.496e-7	63.64	protein:Tk06001 transcript:maker-scaffold505_size1...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s103	supercontig	LSalAtl2s103:1234959..1237071 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016
Blast vs. GO	2014-04-02
TblastN vs C. finmarchicus TSA	2014-05-09
Blastp vs. self	2014-05-10
Blastp vs. SwissProt	2017-02-10
Blastp vs. Selected Arthropods	2017-02-20
Blastp vs. NR (2/2017)	2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins	2018-04-18

Properties


Property Name	Value
Logic name	ensemblgenomes
Description	snap_masked-LSalAtl2s103-processed-gene-12.0
Biotype	protein_coding
Evidence	IEA
Note	60S ribosomal protein L17 [Lepeophtheirus salmonis]

Cross References

External references for this gene


Database	Accession
Ensembl Metazoa (gene)	EMLSAG00000000262 (primary cross-reference)

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
EMLSAT00000000262	EMLSAT00000000262-696109	Lepeophtheirus salmonis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at LSalAtl2s103:1234959..1237071-

gene from alignment at LSalAtl2s103:1234959..1237071-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAG00000000262-683028 ID=EMLSAG00000000262-683028|Name=EMLSAG00000000262|organism=Lepeophtheirus salmonis|type=gene|length=2113bp|location=Sequence derived from alignment at LSalAtl2s103:1234959..1237071- (Lepeophtheirus salmonis)
ATGATACGTCGTACCTACCTTGCTCTCAGAAGAATCAATTCTTATTTGAG
CTATCCCTGCCAGATCGAAGTCGTTTTGGTTAAAAAGGAGAAAGCTTTCT
TCAATGTTCCCTCTGATACTCCCGAAAAGGAGAAGGTATCAATAAAGAAT
CAGAAGCTTCAAGTAAATACATAGATCGGAAGATATTACATAATCCTGAT
ACATTTTATTCTGTTAAATATATATCTAAAACGATTAAACAAATATCACT
ATCCTTACTTTGACACCAAGCTGGACTCAATAAAGCGGTTAACTGATGAT
TTATTTTTTAAGTCAATGCATAAATTTTCTCGATATTTTTTCTAAAAAGA
TTGTTCATTTTATTTTAGTTTTCATTGTGAATGAAACTTTGGAAACATTT
AATTGGCTTACTAAATAAGGTACCCTCTTTCCCCCCCCTTAATATCAACA
TATAGAATAATATAAAAACAAACAACTCTTGTTATACAAATTTATTCATC
AGACCAAGGACACCATAGATGGAGGGCAAATAAATCGATTGTGCTTGTGC
TTCTTAACACAGGAATGAGTTATCACGAGATCTCCTTCAATGTCCCCAAC
TCTAAGAGCATCATAACCCCTTTAATAAACTGAAAGACGAGAAAAAGAGG
CTTKAAAGGKAGCCAAAAGGTAAAAAGCCCAAAAAAAAACTCCAAAGTGG
TGCAGGGACAACTTGTCAAATTTCTATCCTGGCCTCTGTCTTCACCAGAT
TGGAATCTGTGCCATCGAGAGAAAAGATTGGAGCACCTCCCATGTGAATG
TGGATACCCTAAAGGCTGCTGTTGAGGGKTCTTGTACTTTATGAGAACAG
TAGATTATATGAGGACAGTTTTGTATCTAGATATTTGCTGCCTTCATATA
GTCCAAAAAAGGTAATATATGGCGACAGTAGATTATAGAAATACCTTAAC
TGGTTGGAACTCTTGATGTTGTCTCCATATAGTACACTATTCCCATAAAG
TCCGGCTTGAGTGAAAACAAAACTACAAACAAAGAATTATTGCGTGTTTT
GTTAATAAATATTTGTATCCAACATTTGACTTGAATAATGAAGTAGAAAA
TTAATATTTGTTTTTATTTTTGTTTTTTACAAATAAAATGGATTTTTAAT
CGAATTGAATTGTTTACTTAAATGCAATGCCTTTTTTTTTTTTTATCGTT
TTAAGTCTATTTGTATTCATCAAATGGCACTCTTAGACTTCATGTGTGAC
TATACATATGGCCAATCAACATTAAAGCAAGTTAGAAGGAGTTTTCTTCT
TGCCTGAGAAGATTTTCACAGTCGACAGATGACTCTTCAAGTAATGACGG
ACTTTTTTGCATCGCCATAAGGGCTTTATCTTGTCGGTGAGGAGATATTT
TGGAGTCCTGACAAAGCTCTTAAGGCCTATGGCATCATGAACTGATGATG
ATTTTGTTCATGTTGAACTTGTCAGCCAAACGCCGCATTGATGCTCTTTG
ATCTTCCTTAATGTTGGCCTCCAGGGACTTGAGAAATATTTCATCTCGCT
TCTAACCATTTCCTCCACTTCCTGTATTCCTTTTGATTCCTTTTCCATTC
TCCTTGGGCACTGTCCTCACAGTCACGCCGACAAAAATATTATTTTTGGA
TCAACATCCGCGTGGAGAAGATCCGAAACCCTTTGCCTTTCGGATTCTTG
TTAACTCATTTATCGTCAAATTTTGATCAAATCTAAACAATGCGTAATAA
AAAAAGCACATGGATCGAACCCCCCCCCCCCCCACGTTCTTGAGACGTTG
CCTGAACACTTAAGTAGGGCATGAAAATTCATTTGATTGATGTTGCAAAT
TTCCATTTCGCACTCTGTTATGATTTTGTACTAAGTAACAATTAAATACA
ATGTTTTAAACCTAAAATAAATATATTTAGATTGAATAATATTTGACCAT
TTTTTAATATAGGCCAATAAGTAATAAATATTTTTAATATGGCATATTTT
ACTTTTAATAATACCTATAATTTCAGATTTTGTATTAAAAATAATAATAA
TATATTTTTGCAGTTTTAAAGATGAACAACTTGAGTGCACATGATGAGGA
TAATGAAATATAA

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