EMLSAG00000000262, EMLSAG00000000262-683028 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000262
Unique NameEMLSAG00000000262-683028
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:rpl-17 species:6239 "Caenorhabditis elegans" [GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode larval development" evidence=IMP] [GO:0007413 "axonal fasciculation" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 EMBL:FO081800 Gene3D:3.90.470.10 SUPFAM:SSF54843 eggNOG:COG0091 HOGENOM:HOG000205045 KO:K02880 OMA:MHIRKAN PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 OrthoDB:EOG70GMHF HAMAP:MF_01331_A RefSeq:NP_740781.1 RefSeq:NP_740782.1 UniGene:Cel.9029 ProteinModelPortal:Q9BL19 SMR:Q9BL19 BioGrid:37191 DIP:DIP-26651N MINT:MINT-1111583 PaxDb:Q9BL19 PRIDE:Q9BL19 EnsemblMetazoa:Y48G8AL.8a.1 EnsemblMetazoa:Y48G8AL.8a.2 GeneID:171692 KEGG:cel:CELE_Y48G8AL.8 UCSC:Y48G8AL.8b CTD:171692 WormBase:Y48G8AL.8a WormBase:Y48G8AL.8b InParanoid:Q9BL19 NextBio:872327 PRO:PR:Q9BL19 Uniprot:Q9BL19)

HSP 1 Score: 45.4394 bits (106), Expect = 3.090e-6
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 0
Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSD--TPEKEKVSIKNQKLQM 55
            RRTY A  RIN Y+S PC IEV+L +KE    + P+D   P+ +K S + Q+ Q+
Sbjct:  129 RRTYRAHGRINPYMSSPCHIEVILAEKED-VVSKPTDDAAPKVKKESKRKQRRQL 182          
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:rpl-17 "60S ribosomal protein L17" species:6239 "Caenorhabditis elegans" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 EMBL:FO081800 Gene3D:3.90.470.10 SUPFAM:SSF54843 eggNOG:COG0091 HOGENOM:HOG000205045 KO:K02880 OMA:MHIRKAN PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 OrthoDB:EOG70GMHF HAMAP:MF_01331_A RefSeq:NP_740781.1 RefSeq:NP_740782.1 UniGene:Cel.9029 ProteinModelPortal:Q9BL19 SMR:Q9BL19 BioGrid:37191 DIP:DIP-26651N MINT:MINT-1111583 PaxDb:Q9BL19 PRIDE:Q9BL19 EnsemblMetazoa:Y48G8AL.8a.1 EnsemblMetazoa:Y48G8AL.8a.2 GeneID:171692 KEGG:cel:CELE_Y48G8AL.8 UCSC:Y48G8AL.8b CTD:171692 WormBase:Y48G8AL.8a WormBase:Y48G8AL.8b InParanoid:Q9BL19 NextBio:872327 PRO:PR:Q9BL19 Uniprot:Q9BL19)

HSP 1 Score: 45.4394 bits (106), Expect = 3.090e-6
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 0
Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSD--TPEKEKVSIKNQKLQM 55
            RRTY A  RIN Y+S PC IEV+L +KE    + P+D   P+ +K S + Q+ Q+
Sbjct:  129 RRTYRAHGRINPYMSSPCHIEVILAEKED-VVSKPTDDAAPKVKKESKRKQRRQL 182          
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RPL17 "60S ribosomal protein L17" species:9606 "Homo sapiens" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 HAMAP:MF_01331_A EMBL:AC100778 HGNC:HGNC:10307 ProteinModelPortal:J3KRX5 Ensembl:ENST00000583637 NextBio:35535710 ArrayExpress:J3KRX5 Uniprot:J3KRX5)

HSP 1 Score: 45.0542 bits (105), Expect = 4.737e-6
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIK 49
            M RRTY A  RIN Y+S PC IE++L +KE+       +  +K+K+S K
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQK 173          
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RPL17 "60S ribosomal protein L17" species:9606 "Homo sapiens" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 HAMAP:MF_01331_A EMBL:AC100778 HGNC:HGNC:10307 ProteinModelPortal:J3QQT2 Ensembl:ENST00000578532 NextBio:35536834 ArrayExpress:J3QQT2 Uniprot:J3QQT2)

HSP 1 Score: 44.2838 bits (103), Expect = 7.530e-6
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVS 47
            M RRTY A  RIN Y+S PC IE++L +KE+       +  +K+K+S
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKIS 171          
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RpL17 "60S ribosomal protein L17" species:7245 "Drosophila yakuba" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575 "cellular_component" evidence=ND] [GO:0008150 "biological_process" evidence=ND] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 EMBL:CM000162 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 eggNOG:COG0091 KO:K02880 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 OrthoDB:EOG70GMHF EMBL:AY231666 EMBL:AY232017 RefSeq:XP_002099933.1 ProteinModelPortal:Q6XJ13 SMR:Q6XJ13 EnsemblMetazoa:FBtr0262966 GeneID:6524064 KEGG:dya:Dyak_GE16448 FlyBase:FBgn0068331 Uniprot:Q6XJ13)

HSP 1 Score: 44.2838 bits (103), Expect = 1.102e-5
Identity = 19/39 (48.72%), Postives = 24/39 (61.54%), Query Frame = 0
Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTP 41
            RRTY A  RIN Y+S PC +EV+L +KE+       D P
Sbjct:  127 RRTYRAHGRINPYMSSPCHVEVILTEKEEVVSKATDDEP 165          
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RpL17 "Ribosomal protein L17" species:7227 "Drosophila melanogaster" [GO:0003735 "structural constituent of ribosome" evidence=ISS] [GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0007052 "mitotic spindle organization" evidence=IMP] [GO:0000022 "mitotic spindle elongation" evidence=IMP] [GO:0051298 "centrosome duplication" evidence=IMP] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 EMBL:AE014298 GO:GO:0003735 GO:GO:0051298 GO:GO:0000022 GO:GO:0015934 PDB:3J39 PDBsum:3J39 Gene3D:3.90.470.10 SUPFAM:SSF54843 eggNOG:COG0091 KO:K02880 OMA:MHIRKAN PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 CTD:6139 OrthoDB:EOG70GMHF EMBL:AY060845 RefSeq:NP_572346.1 RefSeq:NP_727118.1 RefSeq:NP_727119.1 RefSeq:NP_727120.1 UniGene:Dm.7261 ProteinModelPortal:Q9W3W8 SMR:Q9W3W8 BioGrid:58099 IntAct:Q9W3W8 MINT:MINT-330499 STRING:7227.FBpp0070942 PaxDb:Q9W3W8 PRIDE:Q9W3W8 EnsemblMetazoa:FBtr0070980 EnsemblMetazoa:FBtr0070981 EnsemblMetazoa:FBtr0070982 EnsemblMetazoa:FBtr0070983 GeneID:31613 KEGG:dme:Dmel_CG3203 FlyBase:FBgn0029897 InParanoid:Q9W3W8 PhylomeDB:Q9W3W8 ChiTaRS:RPL17 GenomeRNAi:31613 NextBio:774485 PRO:PR:Q9W3W8 Bgee:Q9W3W8 Uniprot:Q9W3W8)

HSP 1 Score: 43.5134 bits (101), Expect = 1.757e-5
Identity = 19/39 (48.72%), Postives = 24/39 (61.54%), Query Frame = 0
Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTP 41
            RRTY A  RIN Y+S PC +EV+L +KE+       D P
Sbjct:  127 RRTYRAHGRINPYMSSPCHVEVILTEKEELVSKATDDEP 165          
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RpL17 "60S ribosomal protein L17" species:46245 "Drosophila pseudoobscura pseudoobscura" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575 "cellular_component" evidence=ND] [GO:0008150 "biological_process" evidence=ND] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 EMBL:CH379063 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 eggNOG:COG0091 KO:K02880 OMA:MHIRKAN PANTHER:PTHR11593 TIGRFAMs:TIGR01038 OrthoDB:EOG70GMHF RefSeq:XP_001355571.1 ProteinModelPortal:Q29IM3 SMR:Q29IM3 STRING:7237.FBpp0273522 EnsemblMetazoa:FBtr0275084 GeneID:4815497 KEGG:dpo:Dpse_GA16622 FlyBase:FBgn0076637 InParanoid:Q29IM3 Uniprot:Q29IM3)

HSP 1 Score: 43.5134 bits (101), Expect = 1.908e-5
Identity = 19/39 (48.72%), Postives = 24/39 (61.54%), Query Frame = 0
Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTP 41
            RRTY A  RIN Y+S PC +EV+L +KE+       D P
Sbjct:  127 RRTYRAHGRINPYMSSPCHVEVILTEKEEVVSKAVDDEP 165          
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:R4GH31 "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 RefSeq:XP_003643392.2 Ensembl:ENSGALT00000045235 GeneID:100857334 KEGG:gga:100857334 Uniprot:R4GH31)

HSP 1 Score: 41.5874 bits (96), Expect = 5.854e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:   87 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQ 117          
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:LOC607592 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 OrthoDB:EOG70GMHF TreeFam:TF300042 EMBL:AAEX03011013 OMA:NTCETAL Ensembl:ENSCAFT00000015649 Uniprot:J9P4F7)

HSP 1 Score: 41.9726 bits (97), Expect = 6.397e-5
Identity = 23/53 (43.40%), Postives = 32/53 (60.38%), Query Frame = 0
Query:    4 RTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVS---IKNQKL 53
            RTY A  RIN Y+S PC IE++L +KE        +  +K+K+S   +K QKL
Sbjct:  128 RTYRAHGRINPYMSSPCHIEMILTEKEPIVPKPEEEVAQKKKISQRKLKKQKL 180          
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RPL17-C18orf32 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 Gene3D:3.90.470.10 SUPFAM:SSF54843 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 OrthoDB:EOG70GMHF TreeFam:TF300042 EMBL:AAEX03007599 Ensembl:ENSCAFT00000005201 OMA:NTPRETA Uniprot:J9NUV8)

HSP 1 Score: 41.9726 bits (97), Expect = 6.801e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:  134 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQ 164          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592785796|gb|GAXK01168772.1| (TSA: Calanus finmarchicus comp52_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 45.4394 bits (106), Expect = 1.472e-6
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAF 33
            M RRTY A  RIN Y+S PC IE+ LV+KE+AF
Sbjct:  156 MRRRTYRAHGRINPYMSSPCHIEICLVEKEQAF 254          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592851707|gb|GAXK01105837.1| (TSA: Calanus finmarchicus comp3760062_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 44.669 bits (104), Expect = 2.811e-6
Identity = 21/41 (51.22%), Postives = 25/41 (60.98%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTP 41
            M RRTY A  RIN Y+S PC +EV+L +KE     V  D P
Sbjct:  100 MRRRTYRAHGRINPYMSTPCHLEVILSEKEDVVSKVKDDEP 222          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592849740|gb|GAXK01107804.1| (TSA: Calanus finmarchicus comp3992595_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.9726 bits (97), Expect = 1.735e-5
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = 0
Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKE 30
            RRTY A  RIN+Y+S PC +EVVL +KE
Sbjct:  389 RRTYRAHGRINAYMSNPCHVEVVLSEKE 472          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592873162|gb|GAXK01084400.1| (TSA: Calanus finmarchicus comp5236245_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 1.304e-4
Identity = 20/58 (34.48%), Postives = 32/58 (55.17%), Query Frame = 0
Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQMNNLSA 60
            RRTY A  RIN Y+S PC +E++L +K +       +   ++K+  + Q+   N  SA
Sbjct:   53 RRTYRAHGRINPYMSSPCHVELILSQKAEPVAKAEEEG--QKKIGRRRQQRLKNGASA 220          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592814455|gb|GAXK01140113.1| (TSA: Calanus finmarchicus comp8780814_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.1206 bits (87), Expect = 3.190e-4
Identity = 15/28 (53.57%), Postives = 21/28 (75.00%), Query Frame = 0
Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKE 30
            RRTY A  RIN Y+S PC +E++L +K+
Sbjct:  136 RRTYRAHGRINPYMSSPCHVELILSQKQ 219          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592935984|gb|GAXK01022569.1| (TSA: Calanus finmarchicus comp7731594_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.870e-3
Identity = 14/28 (50.00%), Postives = 19/28 (67.86%), Query Frame = 0
Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKE 30
            RRTY A  RI  Y++ PC IE++L  +E
Sbjct:  261 RRTYRAHGRIGPYMASPCHIELILTPRE 344          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592886996|gb|GAXK01071379.1| (TSA: Calanus finmarchicus comp7339657_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 5.333e-3
Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 0
Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKK 29
            RRTY A  RIN Y++ PC IE+++  K
Sbjct:  146 RRTYRAHGRINPYMASPCHIELIMETK 226          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592757562|gb|GAXK01196851.1| (TSA: Calanus finmarchicus comp5309723_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 8.066e-2
Identity = 15/29 (51.72%), Postives = 19/29 (65.52%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKK 29
            M RRTY A  RIN+Y+  P  I +V V+K
Sbjct:  382 MRRRTYRAHGRINAYMRNPTHINLVCVEK 468          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592862549|gb|GAXK01095013.1| (TSA: Calanus finmarchicus comp2108352_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 3.697e-1
Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = 0
Query:    3 RRTYLALRRINSYLSYPCQIEVVL 26
            RRTY A  RI+ + S PC +E++ 
Sbjct:  190 RRTYRAHGRISRFASNPCHVELIC 261          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592874593|gb|GAXK01082969.1| (TSA: Calanus finmarchicus comp656107_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.365e+0
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 0
Query:   41 PEKEKVSIKNQKLQMNNLSAHDE 63
            PE  K  +KNQK Q  +LSA+ E
Sbjct:   72 PESYKYLLKNQKFQTQSLSANPE 140          
BLAST of EMLSAG00000000262 vs. L. salmonis peptides
Match: EMLSAP00000000262 (pep:novel supercontig:LSalAtl2s:LSalAtl2s103:1234959:1237071:-1 gene:EMLSAG00000000262 transcript:EMLSAT00000000262 description:"snap_masked-LSalAtl2s103-processed-gene-12.0")

HSP 1 Score: 138.658 bits (348), Expect = 2.880e-44
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQMNNLSAHDEDNEI 67
            MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQMNNLSAHDEDNEI
Sbjct:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQMNNLSAHDEDNEI 67          
BLAST of EMLSAG00000000262 vs. L. salmonis peptides
Match: EMLSAP00000006484 (pep:novel supercontig:LSalAtl2s:LSalAtl2s354:78083:78928:-1 gene:EMLSAG00000006484 transcript:EMLSAT00000006484 description:"augustus_masked-LSalAtl2s354-processed-gene-0.5")

HSP 1 Score: 65.0846 bits (157), Expect = 8.312e-15
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPE 42
            M RRTY A  RIN Y+S PC IEVVLV+KE+AF  VPSDTPE
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEVVLVEKEQAFSKVPSDTPE 166          
BLAST of EMLSAG00000000262 vs. nr
Match: gi|225714586|gb|ACO13139.1| (60S ribosomal protein L17 [Lepeophtheirus salmonis])

HSP 1 Score: 64.6994 bits (156), Expect = 2.264e-11
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPE 42
            M RRTY A  RIN Y+S PC IEVVLV+KE+AF  VPSDTPE
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEVVLVEKEQAFSKVPSDTPE 166          
BLAST of EMLSAG00000000262 vs. nr
Match: gi|225711442|gb|ACO11567.1| (60S ribosomal protein L17 [Caligus rogercresseyi])

HSP 1 Score: 59.3066 bits (142), Expect = 3.008e-9
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPE 42
            M RRTY A  RIN Y+S PC IEVVL++KE++F  VP++TPE
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEVVLLEKEQSFSKVPTETPE 166          
BLAST of EMLSAG00000000262 vs. nr
Match: gi|225718404|gb|ACO15048.1| (60S ribosomal protein L17 [Caligus clemensi])

HSP 1 Score: 55.8398 bits (133), Expect = 6.220e-8
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPE 42
            M RRTY A  RIN Y+S PC IEVVLV+KE+AF  V  + PE
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEVVLVEKEQAFSKVAPEAPE 166          
BLAST of EMLSAG00000000262 vs. nr
Match: gi|748384555|gb|KIH58838.1| (hypothetical protein ANCDUO_10947 [Ancylostoma duodenale])

HSP 1 Score: 50.8322 bits (120), Expect = 5.542e-7
Identity = 25/55 (45.45%), Postives = 32/55 (58.18%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQM 55
            M RRTY A  RIN Y+S PC IEV+L +KE        D P  +K S + Q+ Q+
Sbjct:    1 MRRRTYRAHGRINPYMSSPCHIEVILTEKEDVVAKPSDDIPRAKKESKRKQRRQL 55          
BLAST of EMLSAG00000000262 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold505_size153196-snap-gene-0.21 (protein:Tk06001 transcript:maker-scaffold505_size153196-snap-gene-0.21-mRNA-1 annotation:"60s ribosomal protein l17")

HSP 1 Score: 44.2838 bits (103), Expect = 2.496e-7
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAF 33
            M RRTY A  RIN Y+S PC IEV LV+KE+ F
Sbjct:  242 MRRRTYRAHGRINPYMSSPCHIEVCLVEKEQTF 274          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000262 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 25
Match NameE-valueIdentityDescription
-3.090e-645.45symbol:rpl-17 species:6239 "Caenorhabditis elegans... [more]
-3.090e-645.45symbol:rpl-17 "60S ribosomal protein L17" species:... [more]
-4.737e-644.90symbol:RPL17 "60S ribosomal protein L17" species:9... [more]
-7.530e-644.68symbol:RPL17 "60S ribosomal protein L17" species:9... [more]
-1.102e-548.72symbol:RpL17 "60S ribosomal protein L17" species:7... [more]
-1.757e-548.72symbol:RpL17 "Ribosomal protein L17" species:7227 ... [more]
-1.908e-548.72symbol:RpL17 "60S ribosomal protein L17" species:4... [more]
-5.854e-558.06symbol:R4GH31 "Uncharacterized protein" species:90... [more]
-6.397e-543.40symbol:LOC607592 "Uncharacterized protein" species... [more]
-6.801e-558.06symbol:RPL17-C18orf32 "Uncharacterized protein" sp... [more]

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BLAST of EMLSAG00000000262 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 11
Match NameE-valueIdentityDescription
gi|592785796|gb|GAXK01168772.1|1.472e-663.64TSA: Calanus finmarchicus comp52_c0_seq1 transcrib... [more]
gi|592851707|gb|GAXK01105837.1|2.811e-651.22TSA: Calanus finmarchicus comp3760062_c0_seq1 tran... [more]
gi|592849740|gb|GAXK01107804.1|1.735e-564.29TSA: Calanus finmarchicus comp3992595_c0_seq1 tran... [more]
gi|592873162|gb|GAXK01084400.1|1.304e-434.48TSA: Calanus finmarchicus comp5236245_c0_seq1 tran... [more]
gi|592814455|gb|GAXK01140113.1|3.190e-453.57TSA: Calanus finmarchicus comp8780814_c0_seq1 tran... [more]
gi|592935984|gb|GAXK01022569.1|1.870e-350.00TSA: Calanus finmarchicus comp7731594_c0_seq1 tran... [more]
gi|592886996|gb|GAXK01071379.1|5.333e-351.85TSA: Calanus finmarchicus comp7339657_c0_seq1 tran... [more]
gi|592757562|gb|GAXK01196851.1|8.066e-251.72TSA: Calanus finmarchicus comp5309723_c0_seq1 tran... [more]
gi|592862549|gb|GAXK01095013.1|3.697e-145.83TSA: Calanus finmarchicus comp2108352_c0_seq1 tran... [more]
gi|592874593|gb|GAXK01082969.1|4.365e+052.17TSA: Calanus finmarchicus comp656107_c0_seq1 trans... [more]

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BLAST of EMLSAG00000000262 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000002622.880e-44100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s103:12349... [more]
EMLSAP000000064848.312e-1571.43pep:novel supercontig:LSalAtl2s:LSalAtl2s354:78083... [more]
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BLAST of EMLSAG00000000262 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000262 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000262 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 4
Match NameE-valueIdentityDescription
gi|225714586|gb|ACO13139.1|2.264e-1171.4360S ribosomal protein L17 [Lepeophtheirus salmonis... [more]
gi|225711442|gb|ACO11567.1|3.008e-961.9060S ribosomal protein L17 [Caligus rogercresseyi][more]
gi|225718404|gb|ACO15048.1|6.220e-861.9060S ribosomal protein L17 [Caligus clemensi][more]
gi|748384555|gb|KIH58838.1|5.542e-745.45hypothetical protein ANCDUO_10947 [Ancylostoma duo... [more]
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BLAST of EMLSAG00000000262 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold505_size153196-snap-gene-0.212.496e-763.64protein:Tk06001 transcript:maker-scaffold505_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s103supercontigLSalAtl2s103:1234959..1237071 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s103-processed-gene-12.0
Biotypeprotein_coding
EvidenceIEA
Note60S ribosomal protein L17 [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000262 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000262EMLSAT00000000262-696109Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s103:1234959..1237071-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000262-683028 ID=EMLSAG00000000262-683028|Name=EMLSAG00000000262|organism=Lepeophtheirus salmonis|type=gene|length=2113bp|location=Sequence derived from alignment at LSalAtl2s103:1234959..1237071- (Lepeophtheirus salmonis)
ATGATACGTCGTACCTACCTTGCTCTCAGAAGAATCAATTCTTATTTGAG CTATCCCTGCCAGATCGAAGTCGTTTTGGTTAAAAAGGAGAAAGCTTTCT TCAATGTTCCCTCTGATACTCCCGAAAAGGAGAAGGTATCAATAAAGAAT CAGAAGCTTCAAGTAAATACATAGATCGGAAGATATTACATAATCCTGAT ACATTTTATTCTGTTAAATATATATCTAAAACGATTAAACAAATATCACT ATCCTTACTTTGACACCAAGCTGGACTCAATAAAGCGGTTAACTGATGAT TTATTTTTTAAGTCAATGCATAAATTTTCTCGATATTTTTTCTAAAAAGA TTGTTCATTTTATTTTAGTTTTCATTGTGAATGAAACTTTGGAAACATTT AATTGGCTTACTAAATAAGGTACCCTCTTTCCCCCCCCTTAATATCAACA TATAGAATAATATAAAAACAAACAACTCTTGTTATACAAATTTATTCATC AGACCAAGGACACCATAGATGGAGGGCAAATAAATCGATTGTGCTTGTGC TTCTTAACACAGGAATGAGTTATCACGAGATCTCCTTCAATGTCCCCAAC TCTAAGAGCATCATAACCCCTTTAATAAACTGAAAGACGAGAAAAAGAGG CTTKAAAGGKAGCCAAAAGGTAAAAAGCCCAAAAAAAAACTCCAAAGTGG TGCAGGGACAACTTGTCAAATTTCTATCCTGGCCTCTGTCTTCACCAGAT TGGAATCTGTGCCATCGAGAGAAAAGATTGGAGCACCTCCCATGTGAATG TGGATACCCTAAAGGCTGCTGTTGAGGGKTCTTGTACTTTATGAGAACAG TAGATTATATGAGGACAGTTTTGTATCTAGATATTTGCTGCCTTCATATA GTCCAAAAAAGGTAATATATGGCGACAGTAGATTATAGAAATACCTTAAC TGGTTGGAACTCTTGATGTTGTCTCCATATAGTACACTATTCCCATAAAG TCCGGCTTGAGTGAAAACAAAACTACAAACAAAGAATTATTGCGTGTTTT GTTAATAAATATTTGTATCCAACATTTGACTTGAATAATGAAGTAGAAAA TTAATATTTGTTTTTATTTTTGTTTTTTACAAATAAAATGGATTTTTAAT CGAATTGAATTGTTTACTTAAATGCAATGCCTTTTTTTTTTTTTATCGTT TTAAGTCTATTTGTATTCATCAAATGGCACTCTTAGACTTCATGTGTGAC TATACATATGGCCAATCAACATTAAAGCAAGTTAGAAGGAGTTTTCTTCT TGCCTGAGAAGATTTTCACAGTCGACAGATGACTCTTCAAGTAATGACGG ACTTTTTTGCATCGCCATAAGGGCTTTATCTTGTCGGTGAGGAGATATTT TGGAGTCCTGACAAAGCTCTTAAGGCCTATGGCATCATGAACTGATGATG ATTTTGTTCATGTTGAACTTGTCAGCCAAACGCCGCATTGATGCTCTTTG ATCTTCCTTAATGTTGGCCTCCAGGGACTTGAGAAATATTTCATCTCGCT TCTAACCATTTCCTCCACTTCCTGTATTCCTTTTGATTCCTTTTCCATTC TCCTTGGGCACTGTCCTCACAGTCACGCCGACAAAAATATTATTTTTGGA TCAACATCCGCGTGGAGAAGATCCGAAACCCTTTGCCTTTCGGATTCTTG TTAACTCATTTATCGTCAAATTTTGATCAAATCTAAACAATGCGTAATAA AAAAAGCACATGGATCGAACCCCCCCCCCCCCCACGTTCTTGAGACGTTG CCTGAACACTTAAGTAGGGCATGAAAATTCATTTGATTGATGTTGCAAAT TTCCATTTCGCACTCTGTTATGATTTTGTACTAAGTAACAATTAAATACA ATGTTTTAAACCTAAAATAAATATATTTAGATTGAATAATATTTGACCAT TTTTTAATATAGGCCAATAAGTAATAAATATTTTTAATATGGCATATTTT ACTTTTAATAATACCTATAATTTCAGATTTTGTATTAAAAATAATAATAA TATATTTTTGCAGTTTTAAAGATGAACAACTTGAGTGCACATGATGAGGA TAATGAAATATAA
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