EMLSAG00000000282, EMLSAG00000000282-683048 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000282
Unique NameEMLSAG00000000282-683048
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000282 vs. C. finmarchicus
Match: gi|592940531|gb|GAXK01018022.1| (TSA: Calanus finmarchicus comp32667_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 6.354e-1
Identity = 13/36 (36.11%), Postives = 23/36 (63.89%), Query Frame = 0 
Query:   77 RVDPCMISDLVIPKWMKLEDIPGKSCLGSSYVQFLL 112
            RV+  + ++L+IP W KL  + G +   +S++QFL 
Sbjct:    8 RVNSLVHAELMIPGWEKLITLEGGTTFLASFLQFLF 115
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BLAST of EMLSAG00000000282 vs. C. finmarchicus
Match: gi|592875689|gb|GAXK01081888.1| (TSA: Calanus finmarchicus comp4364593_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.997e+0
Identity = 13/35 (37.14%), Postives = 19/35 (54.29%), Query Frame = 0 
Query:   96 DIPGKSCLGSSYVQFLLCNYIFNHNNYSLLLISFW 130
             + GKSC G S+V+FL     F      L++ S+W
Sbjct:  248 TVSGKSCGGGSFVRFLFGVQ*FGGVGSGLMVYSYW 352
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BLAST of EMLSAG00000000282 vs. C. finmarchicus
Match: gi|592776820|gb|GAXK01177748.1| (TSA: Calanus finmarchicus comp5489192_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 6.267e+0
Identity = 14/30 (46.67%), Postives = 17/30 (56.67%), Query Frame = 0 
Query:   84 SDLVIPKWMKLEDIPGKSCLGSSYVQFLLC 113
              L++P WM      G SCLG S+V F LC
Sbjct:  241 GQLLLPIWMDWY*PGGGSCLGCSHVVFHLC 330
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BLAST of EMLSAG00000000282 vs. L. salmonis peptides
Match: EMLSAP00000000282 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1042:34410:35413:1 gene:EMLSAG00000000282 transcript:EMLSAT00000000282 description:"augustus_masked-LSalAtl2s1042-processed-gene-0.3")

HSP 1 Score: 252.292 bits (643), Expect = 5.060e-87
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 
Query:    1 MAVVILILVPILKIPMXLFSLIRSXRHSSPLSIVMSWTRMMLRIAVQGGEGLKAQSPMLLLFXHLLVILQPLIQKERVDPCMISDLVIPKWMKLEDIPGKSCLGSSYVQFLLCNYIFNHNNYSLLLISFW 130
            MAVVILILVPILKIPMXLFSLIRSXRHSSPLSIVMSWTRMMLRIAVQGGEGLKAQSPMLLLFXHLLVILQPLIQKERVDPCMISDLVIPKWMKLEDIPGKSCLGSSYVQFLLCNYIFNHNNYSLLLISFW
Sbjct:    1 MAVVILILVPILKIPMXLFSLIRSXRHSSPLSIVMSWTRMMLRIAVQGGEGLKAQSPMLLLFXHLLVILQPLIQKERVDPCMISDLVIPKWMKLEDIPGKSCLGSSYVQFLLCNYIFNHNNYSLLLISFW 130
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000282 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000282 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592940531|gb|GAXK01018022.1|6.354e-136.11TSA: Calanus finmarchicus comp32667_c1_seq4 transc... [more]
gi|592875689|gb|GAXK01081888.1|2.997e+037.14TSA: Calanus finmarchicus comp4364593_c0_seq1 tran... [more]
gi|592776820|gb|GAXK01177748.1|6.267e+046.67TSA: Calanus finmarchicus comp5489192_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000282 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000002825.060e-87100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1042:3441... [more]
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BLAST of EMLSAG00000000282 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000282 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000282 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000282 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1042supercontigLSalAtl2s1042:34410..35413 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s1042-processed-gene-0.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000282 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000282EMLSAT00000000282-696129Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1042:34410..35413+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000282-683048 ID=EMLSAG00000000282-683048|Name=EMLSAG00000000282|organism=Lepeophtheirus salmonis|type=gene|length=1004bp|location=Sequence derived from alignment at LSalAtl2s1042:34410..35413+ (Lepeophtheirus salmonis)
ATGTCTCATGGCAGTAGTAATACTCATCTTAGTTCCAATTTTGAAGATCC
CTATGKCACTCTTCTCTCTCATCCGAAGTCRCCGCCACTCATCTCCACTA
TCCATAGTCATGAGTTGGACACGGATGATGCTCAGGATAGCAGTCCAGGG
GGGAGTTGTGGTGGGMCTTCCTTCTCCTTTCTTTTAATTATACATATATT
AATTCTTTCAATTAATTATTCAGAATGTTTGACTAACACTATTCTTTATT
ATAGGAGGGCTTGAAAGCTCAAAGTCCAATGCTGCTGCTCTTCCKCCATC
TTCTGGTAATTCTACAACCGCTAATACAGAAGGAAAGGGTGGATCCTTGC
ATGATCTCCGATCTCGTGATTCCAAAATGGATGAAGCTCGAGGACATTCC
AGGTAAATCATGTCTTGGGTCATCTTATGTCCAGTTCTTACTTTGCAATT
ACATTTTTAATCATAATAATTATTCATTGTTATTAATATCATTTTGGTGA
AGGCTTCAAAGGATACAGAATATATTGCCTACAATTTAATTTGTACATAG
AGTTGAGAGCAATCAAAGGGGGGTATTTAACTATTGAAACTTATTTTAAC
TAGAGAAAGAAGGAAGTAGTATGGATTACTTCCGGAAGTGGAAGAGTCAC
AGTCAATGGTGGATTAAAGTGGGGATTTATTGTTTTTAAATCATAATATG
TTATTTGATTTTCCGTTTTCTATGACTTCTTAGGGATCTGATCTCCTACT
ACTTAGAAATAATGCCATATGTATTAAATATTCATTGCAAAAGCGATACC
TACATACTGTAGCTACTAATAGTAGAGGTACATACCTCCTACTTTATTGC
AAAATATCGAATCTACCGGAAACACAGACTGAGTCAGGTAGTAGTCATCG
CAACAGCAAGGCGGCAGTGTATTCCTACAACCTACTCTGTTCTAAGTCAC
ACACAAAAATACAATTTATTTTACATACATAGGCTACATACAGTTATGCA
AAAG
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