EMLSAG00000000288, EMLSAG00000000288-683054 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000288
Unique NameEMLSAG00000000288-683054
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Match: gi|592943652|gb|GAXK01014901.1| (TSA: Calanus finmarchicus comp9189_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.233e+0
Identity = 18/59 (30.51%), Postives = 30/59 (50.85%), Query Frame = 0 
Query:   39 INAEIKFEIDKYKASR-LIKNENNPLEWWKINQSSFLHMAFLVKKYLCASP-SSVESER 95
            +  ++  E+ KY   R  +   +NP +WW+ N + F  +A   K  +C  P +S  SER
Sbjct: 1923 LKEKLTMELSKYLLLRGTLDTSDNPCDWWRNNHTIFPLLARYWKA-VCPFPATSTSSER 2096
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Match: gi|592752874|gb|GAXK01201539.1| (TSA: Calanus finmarchicus comp4505367_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 2.483e+0
Identity = 16/53 (30.19%), Postives = 28/53 (52.83%), Query Frame = 0 
Query:   43 IKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            +K E+ +Y++  +     N L WW+ ++     ++ L KK L    SS +SER
Sbjct:  179 VKREMMRYESFSIPSKNVNILHWWRDHEKVLPLLSKLAKKVLTVPASSSKSER 337
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Match: gi|592765800|gb|GAXK01188768.1| (TSA: Calanus finmarchicus comp327525_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 2.542e+0
Identity = 15/50 (30.00%), Postives = 28/50 (56.00%), Query Frame = 0 
Query:   46 EIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            E+ +Y++  L     + L+WW+ +++    ++ L KK L    SS +SER
Sbjct:  514 ELRRYESFSLAPKTVDVLQWWRSHENVLPILSKLAKKVLTVPASSSKSER 663
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Match: gi|592949864|gb|GAXK01008689.1| (TSA: Calanus finmarchicus comp3499524_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.417e+0
Identity = 20/62 (32.26%), Postives = 31/62 (50.00%), Query Frame = 0 
Query:   34 REFEKINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            RE  KI  E+    DK + +     E + L WWK N+ +  ++A   ++ L    SS +SER
Sbjct:   20 REESKIRKEMSL-FDKLEVA---PKEVDVLNWWKSNEKTLPNLAKFARRILAIPVSSGKSER 193
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Match: gi|592910080|gb|GAXK01048295.1| (TSA: Calanus finmarchicus comp515604_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.890e+0
Identity = 17/79 (21.52%), Postives = 39/79 (49.37%), Query Frame = 0 
Query:   17 DEKENQTSNQMKKTSSTREFEKINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            +EK    +N+ ++++    F    + ++ E+  Y+A    +   + L WW+++Q     +A +V+       +S +SER
Sbjct: 1946 NEKAKTVANKGRRSAV---FSTPQSALQKEMQSYEALPGAEQGVDQLNWWRLHQEQLPLLASIVRVVFAVQAASSKSER 2173
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Match: gi|592873201|gb|GAXK01084361.1| (TSA: Calanus finmarchicus comp7987699_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 8.429e+0
Identity = 14/51 (27.45%), Postives = 25/51 (49.02%), Query Frame = 0 
Query:   46 EIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESERQ 96
            E+D Y++  +   ++  L WWK + S  +       K++ A P+S  S  Q
Sbjct:   36 ELDLYRSLPICTEKDGVLCWWK-DHSEVMPRLATFAKHILAVPASTSSSEQ 185
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Match: gi|592847422|gb|GAXK01110122.1| (TSA: Calanus finmarchicus comp563112_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 9.700e+0
Identity = 19/47 (40.43%), Postives = 25/47 (53.19%), Query Frame = 0 
Query:   18 EKENQTSNQMKKTSSTREFEKINAEIKFEIDKYK--ASRLIKNENNP 62
            E EN+ SN     S  REF + N+ +K EID  +    RL+  EN P
Sbjct: 1131 EDENEISN-----SKLREFMEENSRLKLEIDNAEILTGRLLAVENCP 1256
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BLAST of EMLSAG00000000288 vs. L. salmonis peptides
Match: EMLSAP00000000288 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1042:72989:73461:1 gene:EMLSAG00000000288 transcript:EMLSAT00000000288 description:"snap_masked-LSalAtl2s1042-processed-gene-0.20")

HSP 1 Score: 198.364 bits (503), Expect = 1.000e-66
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 
Query:    1 MTDITTNKIKEKYSQRDEKENQTSNQMKKTSSTREFEKINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESERQKK 98
            MTDITTNKIKEKYSQRDEKENQTSNQMKKTSSTREFEKINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESERQKK
Sbjct:    1 MTDITTNKIKEKYSQRDEKENQTSNQMKKTSSTREFEKINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESERQKK 98
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BLAST of EMLSAG00000000288 vs. L. salmonis peptides
Match: EMLSAP00000006992 (pep:novel supercontig:LSalAtl2s:LSalAtl2s397:540170:543663:1 gene:EMLSAG00000006992 transcript:EMLSAT00000006992 description:"snap_masked-LSalAtl2s397-processed-gene-5.7")

HSP 1 Score: 71.633 bits (174), Expect = 3.192e-17
Identity = 34/50 (68.00%), Postives = 45/50 (90.00%), Query Frame = 0 
Query:    6 TNKIKEKYSQRDEKENQTSNQMKKTSSTREFEKINAEIKFEIDKYKASRL 55
             N+IKE YSQ+DEKENQTSNQMKK+ ST+EFEKINA+IKFE+D+ ++ ++
Sbjct:   62 ANEIKENYSQKDEKENQTSNQMKKSYSTQEFEKINADIKFEMDQIQSLKI 111
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BLAST of EMLSAG00000000288 vs. L. salmonis peptides
Match: EMLSAP00000002743 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1590:12813:13187:1 gene:EMLSAG00000002743 transcript:EMLSAT00000002743 description:"snap_masked-LSalAtl2s1590-processed-gene-0.12")

HSP 1 Score: 50.0618 bits (118), Expect = 1.968e-9
Identity = 25/40 (62.50%), Postives = 28/40 (70.00%), Query Frame = 0 
Query:   55 LIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESE 94
            +IK ENNPLE  KI+QSSF    F  KKYLCA   SV+SE
Sbjct:    1 MIKQENNPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSE 40
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BLAST of EMLSAG00000000288 vs. L. salmonis peptides
Match: EMLSAP00000006762 (pep:novel supercontig:LSalAtl2s:LSalAtl2s378:647777:650272:1 gene:EMLSAG00000006762 transcript:EMLSAT00000006762 description:"augustus-LSalAtl2s378-processed-gene-6.1")

HSP 1 Score: 50.447 bits (119), Expect = 1.417e-8
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 0 
Query:   30 TSSTREFEKINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            TS++   +  NA I+ E+  Y  S  I  E NPL WW+I + +F  ++ + +KYLC   +S  SER
Sbjct:  526 TSASMTIDPTNA-IESELSVYMQSSTIDTEENPLLWWRIQKINFPRLSIMARKYLCVQATSSPSER 590
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BLAST of EMLSAG00000000288 vs. nr
Match: gi|675864866|ref|XP_009017993.1| (hypothetical protein HELRODRAFT_79655 [Helobdella robusta] >gi|555700824|gb|ESO04057.1| hypothetical protein HELRODRAFT_79655 [Helobdella robusta])

HSP 1 Score: 53.5286 bits (127), Expect = 3.407e-7
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 0 
Query:   37 EKINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            +++   I+ E+DKY    L+    NPL WWK+N   F  +A + + YL A P+SV SER
Sbjct:   14 QQVAETIESEVDKYLLEPLLPRTENPLLWWKMNHKRFPSLAAVARVYLSAPPTSVPSER 72
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BLAST of EMLSAG00000000288 vs. nr
Match: gi|939312182|ref|XP_014269988.1| (PREDICTED: zinc finger BED domain-containing protein 1-like [Maylandia zebra])

HSP 1 Score: 54.299 bits (129), Expect = 3.460e-7
Identity = 22/58 (37.93%), Postives = 35/58 (60.34%), Query Frame = 0 
Query:   38 KINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            +++  I FE+  Y  +  +  E +PL WWK++Q+ F  ++ L KKYLC   +S  SER
Sbjct:   44 QLDQAIAFELQAYLQAGTLDTEEDPLGWWKLSQNLFPRLSILAKKYLCIPATSASSER 101
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BLAST of EMLSAG00000000288 vs. nr
Match: gi|928037617|ref|XP_013867469.1| (PREDICTED: zinc finger BED domain-containing protein 1-like [Austrofundulus limnaeus])

HSP 1 Score: 54.299 bits (129), Expect = 4.381e-7
Identity = 23/59 (38.98%), Postives = 37/59 (62.71%), Query Frame = 0 
Query:   37 EKINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            E+I   +  E++ Y     I+ +NNPL +W++NQ+ F  +A    K+LCA  +SV+SER
Sbjct:   33 EQITPGVIIEMESYLCETPIERKNNPLHYWRVNQARFPTLAATAAKFLCAPCTSVKSER 91
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000288 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 17
Match NameE-valueIdentityDescription
gi|592943652|gb|GAXK01014901.1|2.233e+030.51TSA: Calanus finmarchicus comp9189_c1_seq1 transcr... [more]
gi|592752874|gb|GAXK01201539.1|2.483e+030.19TSA: Calanus finmarchicus comp4505367_c0_seq1 tran... [more]
gi|592765800|gb|GAXK01188768.1|2.542e+030.00TSA: Calanus finmarchicus comp327525_c0_seq1 trans... [more]
gi|592949864|gb|GAXK01008689.1|3.417e+032.26TSA: Calanus finmarchicus comp3499524_c0_seq1 tran... [more]
gi|592910080|gb|GAXK01048295.1|3.890e+021.52TSA: Calanus finmarchicus comp515604_c0_seq1 trans... [more]
gi|592873201|gb|GAXK01084361.1|8.429e+027.45TSA: Calanus finmarchicus comp7987699_c0_seq1 tran... [more]
gi|592847422|gb|GAXK01110122.1|9.700e+040.43TSA: Calanus finmarchicus comp563112_c0_seq2 trans... [more]

Pages

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BLAST of EMLSAG00000000288 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000002881.000e-66100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1042:7298... [more]
EMLSAP000000069923.192e-1768.00pep:novel supercontig:LSalAtl2s:LSalAtl2s397:54017... [more]
EMLSAP000000027431.968e-962.50pep:novel supercontig:LSalAtl2s:LSalAtl2s1590:1281... [more]
EMLSAP000000067621.417e-837.88pep:novel supercontig:LSalAtl2s:LSalAtl2s378:64777... [more]
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BLAST of EMLSAG00000000288 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000288 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000288 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 3
Match NameE-valueIdentityDescription
gi|675864866|ref|XP_009017993.1|3.407e-740.68hypothetical protein HELRODRAFT_79655 [Helobdella ... [more]
gi|939312182|ref|XP_014269988.1|3.460e-737.93PREDICTED: zinc finger BED domain-containing prote... [more]
gi|928037617|ref|XP_013867469.1|4.381e-738.98PREDICTED: zinc finger BED domain-containing prote... [more]
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BLAST of EMLSAG00000000288 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1042supercontigLSalAtl2s1042:72989..73461 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1042-processed-gene-0.20
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000288 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000288EMLSAT00000000288-696135Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1042:72989..73461+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000288-683054 ID=EMLSAG00000000288-683054|Name=EMLSAG00000000288|organism=Lepeophtheirus salmonis|type=gene|length=473bp|location=Sequence derived from alignment at LSalAtl2s1042:72989..73461+ (Lepeophtheirus salmonis)
ATGACAGATATAACAACCAATAGTGTGACGACATTATTCGGCAGTGGATG
GKSCAAMATGGTTTWTYYTCCMGGAAWAARGATCTTTATATTGGGCAAAT
AGATATTTCTGTAAGCTCAATAACTTCCAATCACTCTACTTATGATGACA
GCAATAAAGAGGGGAATTTAAATATTACCTTCTCTTCATGCTTCGCAGAA
ATTAAAGAAAAGTATTCTCAAAGAGATGAAAAAGAAAATCAGACTTCCAA
TCAAATGAAAAAAACTTCTTCAACTCGAGAGTTTGAGAAAATCAATGCAG
AAATAAAGTTTGAAATTGACAAATACAAAGCATCAAGATTGATCAAAAAT
GAAAATAATCCTCTAGAGTGGTGGAAAATTAATCAATCAAGTTTCCTACA
CATGGCCTTCCTAGTAAAAAAGTATCTCTGCGCATCACCTTCTTCAGTGG
AGAGTGAAAGGCAAAAGAAATAG
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