EMLSAG00000000288, EMLSAG00000000288-683054 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000288
Unique NameEMLSAG00000000288-683054
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Match: gi|592919619|gb|GAXK01038756.1| (TSA: Calanus finmarchicus comp4818162_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.5874 bits (96), Expect = 2.317e-5
Identity = 20/54 (37.04%), Postives = 33/54 (61.11%), Query Frame = 0 
Query:   43 IKFEIDKYKASRLIKNENNPL-EWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            +K E+D Y     +K +++PL E+WK   S++  ++ L +KYLC   +S  SER
Sbjct:   82 VKKELDNYLDEPKLKEDSDPLLEFWKQKASNYPRLSILARKYLCVQATSTPSER 243
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Match: gi|592839002|gb|GAXK01118542.1| (TSA: Calanus finmarchicus comp5970500_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 3.407e-5
Identity = 20/53 (37.74%), Postives = 31/53 (58.49%), Query Frame = 0 
Query:   43 IKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            IK EI  Y+A   I  E + L WW+  ++ +  +A L +KYLC   +S ++ER
Sbjct:   91 IKQEIKSYRAETEISREEDILSWWRDRKAKYPKLARLARKYLCVPATSTQAER 249
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Match: gi|592945465|gb|GAXK01013088.1| (TSA: Calanus finmarchicus comp2491288_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 39.2762 bits (90), Expect = 8.901e-4
Identity = 22/71 (30.99%), Postives = 39/71 (54.93%), Query Frame = 0 
Query:   26 QMKKTSSTR-EFEKINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
             M K    R +F +   +I+ E+D+Y++  +   + N L+WWK +++    +A L K+ L    SS +SER
Sbjct: 1547 HMAKIQKARTQFGQPRNKIRLEMDRYESFSIPGKDVNILQWWKSHEAVLPLLASLAKRILTIPASSSKSER 1759
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Match: gi|592924342|gb|GAXK01034073.1| (TSA: Calanus finmarchicus comp3606267_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 3.962e-2
Identity = 18/68 (26.47%), Postives = 32/68 (47.06%), Query Frame = 0 
Query:   28 KKTSSTREFEKINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            +K   +  F+     ++ E+ +Y+A        + L WWK NQ  F  +A+L +       +S +SER
Sbjct:  737 RKAGRSAVFDAPETALEKEMKRYEALPGADLGVDQLAWWKTNQDQFPLLAYLARVVFAVQAASSKSER 940
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Match: gi|592759871|gb|GAXK01194542.1| (TSA: Calanus finmarchicus comp5147365_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 5.255e-2
Identity = 18/53 (33.96%), Postives = 30/53 (56.60%), Query Frame = 0 
Query:   43 IKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            IK E++KY+   L   + + L WWK +++    +A + K+ L    SS +SER
Sbjct:  148 IKIEMEKYELFSLQSKDCDVLSWWKQHENVLPLLAKIAKRVLAIPASSAKSER 306
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Match: gi|592884520|gb|GAXK01073855.1| (TSA: Calanus finmarchicus comp4795922_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 5.527e-2
Identity = 20/57 (35.09%), Postives = 31/57 (54.39%), Query Frame = 0 
Query:   39 INAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            +   IK E+ +Y++  L   + N L+WWK ++     +A L KK L    SS +SER
Sbjct:  118 LTPPIKREMIRYESFSLPPKDVNILKWWKDHEKILPLLAKLAKKVLTIPASSSKSER 288
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Match: gi|592941804|gb|GAXK01016749.1| (TSA: Calanus finmarchicus comp2817258_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 6.028e-2
Identity = 15/55 (27.27%), Postives = 32/55 (58.18%), Query Frame = 0 
Query:   41 AEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            ++++ EI+KY+       + + L WWK++++    ++ L ++ L    SS +SER
Sbjct: 1584 SKVRMEIEKYETFSTPGKDVDILLWWKVHEAVLPLLSKLARRVLAVPSSSAKSER 1748
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Match: gi|592898349|gb|GAXK01060026.1| (TSA: Calanus finmarchicus comp4749793_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 1.949e-1
Identity = 21/62 (33.87%), Postives = 32/62 (51.61%), Query Frame = 0 
Query:   34 REFEKINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            RE  K+ AE+    DK +   +   E N L WWK ++ +  ++A   +K L    SS +SER
Sbjct:  640 REVSKVRAEMAL-FDKLE---IAPKEANVLSWWKDHEQTLPNLAQFARKVLAIPVSSGKSER 813
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Match: gi|592920023|gb|GAXK01038352.1| (TSA: Calanus finmarchicus comp4793801_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 4.633e-1
Identity = 12/33 (36.36%), Postives = 20/33 (60.61%), Query Frame = 0 
Query:   63 LEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            LEWWK +Q+ F  ++++ +       SS +SER
Sbjct:  333 LEWWKTHQAQFPLLSYMARVVFAVPASSSKSER 431
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Match: gi|592883628|gb|GAXK01074747.1| (TSA: Calanus finmarchicus comp3869350_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 2.166e+0
Identity = 12/33 (36.36%), Postives = 20/33 (60.61%), Query Frame = 0 
Query:   63 LEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            L+WW+I+Q  F  ++ LV+       +S +SER
Sbjct:   63 LDWWRIHQEQFPLLSHLVRVVFSVQAASSKSER 161
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BLAST of EMLSAG00000000288 vs. L. salmonis peptides
Match: EMLSAP00000000288 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1042:72989:73461:1 gene:EMLSAG00000000288 transcript:EMLSAT00000000288 description:"snap_masked-LSalAtl2s1042-processed-gene-0.20")

HSP 1 Score: 198.364 bits (503), Expect = 1.000e-66
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 
Query:    1 MTDITTNKIKEKYSQRDEKENQTSNQMKKTSSTREFEKINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESERQKK 98
            MTDITTNKIKEKYSQRDEKENQTSNQMKKTSSTREFEKINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESERQKK
Sbjct:    1 MTDITTNKIKEKYSQRDEKENQTSNQMKKTSSTREFEKINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESERQKK 98
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BLAST of EMLSAG00000000288 vs. L. salmonis peptides
Match: EMLSAP00000006992 (pep:novel supercontig:LSalAtl2s:LSalAtl2s397:540170:543663:1 gene:EMLSAG00000006992 transcript:EMLSAT00000006992 description:"snap_masked-LSalAtl2s397-processed-gene-5.7")

HSP 1 Score: 71.633 bits (174), Expect = 3.192e-17
Identity = 34/50 (68.00%), Postives = 45/50 (90.00%), Query Frame = 0 
Query:    6 TNKIKEKYSQRDEKENQTSNQMKKTSSTREFEKINAEIKFEIDKYKASRL 55
             N+IKE YSQ+DEKENQTSNQMKK+ ST+EFEKINA+IKFE+D+ ++ ++
Sbjct:   62 ANEIKENYSQKDEKENQTSNQMKKSYSTQEFEKINADIKFEMDQIQSLKI 111
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BLAST of EMLSAG00000000288 vs. L. salmonis peptides
Match: EMLSAP00000002743 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1590:12813:13187:1 gene:EMLSAG00000002743 transcript:EMLSAT00000002743 description:"snap_masked-LSalAtl2s1590-processed-gene-0.12")

HSP 1 Score: 50.0618 bits (118), Expect = 1.968e-9
Identity = 25/40 (62.50%), Postives = 28/40 (70.00%), Query Frame = 0 
Query:   55 LIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESE 94
            +IK ENNPLE  KI+QSSF    F  KKYLCA   SV+SE
Sbjct:    1 MIKQENNPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSE 40
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BLAST of EMLSAG00000000288 vs. L. salmonis peptides
Match: EMLSAP00000006762 (pep:novel supercontig:LSalAtl2s:LSalAtl2s378:647777:650272:1 gene:EMLSAG00000006762 transcript:EMLSAT00000006762 description:"augustus-LSalAtl2s378-processed-gene-6.1")

HSP 1 Score: 50.447 bits (119), Expect = 1.417e-8
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 0 
Query:   30 TSSTREFEKINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            TS++   +  NA I+ E+  Y  S  I  E NPL WW+I + +F  ++ + +KYLC   +S  SER
Sbjct:  526 TSASMTIDPTNA-IESELSVYMQSSTIDTEENPLLWWRIQKINFPRLSIMARKYLCVQATSSPSER 590
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BLAST of EMLSAG00000000288 vs. nr
Match: gi|675864866|ref|XP_009017993.1| (hypothetical protein HELRODRAFT_79655 [Helobdella robusta] >gi|555700824|gb|ESO04057.1| hypothetical protein HELRODRAFT_79655 [Helobdella robusta])

HSP 1 Score: 53.5286 bits (127), Expect = 3.407e-7
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 0 
Query:   37 EKINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            +++   I+ E+DKY    L+    NPL WWK+N   F  +A + + YL A P+SV SER
Sbjct:   14 QQVAETIESEVDKYLLEPLLPRTENPLLWWKMNHKRFPSLAAVARVYLSAPPTSVPSER 72
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BLAST of EMLSAG00000000288 vs. nr
Match: gi|939312182|ref|XP_014269988.1| (PREDICTED: zinc finger BED domain-containing protein 1-like [Maylandia zebra])

HSP 1 Score: 54.299 bits (129), Expect = 3.460e-7
Identity = 22/58 (37.93%), Postives = 35/58 (60.34%), Query Frame = 0 
Query:   38 KINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            +++  I FE+  Y  +  +  E +PL WWK++Q+ F  ++ L KKYLC   +S  SER
Sbjct:   44 QLDQAIAFELQAYLQAGTLDTEEDPLGWWKLSQNLFPRLSILAKKYLCIPATSASSER 101
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BLAST of EMLSAG00000000288 vs. nr
Match: gi|928037617|ref|XP_013867469.1| (PREDICTED: zinc finger BED domain-containing protein 1-like [Austrofundulus limnaeus])

HSP 1 Score: 54.299 bits (129), Expect = 4.381e-7
Identity = 23/59 (38.98%), Postives = 37/59 (62.71%), Query Frame = 0 
Query:   37 EKINAEIKFEIDKYKASRLIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESER 95
            E+I   +  E++ Y     I+ +NNPL +W++NQ+ F  +A    K+LCA  +SV+SER
Sbjct:   33 EQITPGVIIEMESYLCETPIERKNNPLHYWRVNQARFPTLAATAAKFLCAPCTSVKSER 91
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000288 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000288 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 17
Match NameE-valueIdentityDescription
gi|592919619|gb|GAXK01038756.1|2.317e-537.04TSA: Calanus finmarchicus comp4818162_c0_seq1 tran... [more]
gi|592839002|gb|GAXK01118542.1|3.407e-537.74TSA: Calanus finmarchicus comp5970500_c0_seq1 tran... [more]
gi|592945465|gb|GAXK01013088.1|8.901e-430.99TSA: Calanus finmarchicus comp2491288_c0_seq1 tran... [more]
gi|592924342|gb|GAXK01034073.1|3.962e-226.47TSA: Calanus finmarchicus comp3606267_c0_seq1 tran... [more]
gi|592759871|gb|GAXK01194542.1|5.255e-233.96TSA: Calanus finmarchicus comp5147365_c0_seq1 tran... [more]
gi|592884520|gb|GAXK01073855.1|5.527e-235.09TSA: Calanus finmarchicus comp4795922_c0_seq1 tran... [more]
gi|592941804|gb|GAXK01016749.1|6.028e-227.27TSA: Calanus finmarchicus comp2817258_c0_seq1 tran... [more]
gi|592898349|gb|GAXK01060026.1|1.949e-133.87TSA: Calanus finmarchicus comp4749793_c0_seq1 tran... [more]
gi|592920023|gb|GAXK01038352.1|4.633e-136.36TSA: Calanus finmarchicus comp4793801_c0_seq1 tran... [more]
gi|592883628|gb|GAXK01074747.1|2.166e+036.36TSA: Calanus finmarchicus comp3869350_c0_seq1 tran... [more]

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BLAST of EMLSAG00000000288 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000002881.000e-66100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1042:7298... [more]
EMLSAP000000069923.192e-1768.00pep:novel supercontig:LSalAtl2s:LSalAtl2s397:54017... [more]
EMLSAP000000027431.968e-962.50pep:novel supercontig:LSalAtl2s:LSalAtl2s1590:1281... [more]
EMLSAP000000067621.417e-837.88pep:novel supercontig:LSalAtl2s:LSalAtl2s378:64777... [more]
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BLAST of EMLSAG00000000288 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000288 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000288 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 3
Match NameE-valueIdentityDescription
gi|675864866|ref|XP_009017993.1|3.407e-740.68hypothetical protein HELRODRAFT_79655 [Helobdella ... [more]
gi|939312182|ref|XP_014269988.1|3.460e-737.93PREDICTED: zinc finger BED domain-containing prote... [more]
gi|928037617|ref|XP_013867469.1|4.381e-738.98PREDICTED: zinc finger BED domain-containing prote... [more]
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BLAST of EMLSAG00000000288 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1042supercontigLSalAtl2s1042:72989..73461 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1042-processed-gene-0.20
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000288 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000288EMLSAT00000000288-696135Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1042:72989..73461+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000288-683054 ID=EMLSAG00000000288-683054|Name=EMLSAG00000000288|organism=Lepeophtheirus salmonis|type=gene|length=473bp|location=Sequence derived from alignment at LSalAtl2s1042:72989..73461+ (Lepeophtheirus salmonis)
ATGACAGATATAACAACCAATAGTGTGACGACATTATTCGGCAGTGGATG
GKSCAAMATGGTTTWTYYTCCMGGAAWAARGATCTTTATATTGGGCAAAT
AGATATTTCTGTAAGCTCAATAACTTCCAATCACTCTACTTATGATGACA
GCAATAAAGAGGGGAATTTAAATATTACCTTCTCTTCATGCTTCGCAGAA
ATTAAAGAAAAGTATTCTCAAAGAGATGAAAAAGAAAATCAGACTTCCAA
TCAAATGAAAAAAACTTCTTCAACTCGAGAGTTTGAGAAAATCAATGCAG
AAATAAAGTTTGAAATTGACAAATACAAAGCATCAAGATTGATCAAAAAT
GAAAATAATCCTCTAGAGTGGTGGAAAATTAATCAATCAAGTTTCCTACA
CATGGCCTTCCTAGTAAAAAAGTATCTCTGCGCATCACCTTCTTCAGTGG
AGAGTGAAAGGCAAAAGAAATAG
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