EMLSAG00000000313, EMLSAG00000000313-683079 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000313
Unique NameEMLSAG00000000313-683079
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000313 vs. C. finmarchicus
Match: gi|592917681|gb|GAXK01040694.1| (TSA: Calanus finmarchicus comp419332_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 2.803e-1
Identity = 15/49 (30.61%), Postives = 28/49 (57.14%), Query Frame = 0 
Query:   49 FWPCSKSIRDDYEDDISLEDITSYLHPGAHEYVDEDLEELNASILQKTQ 97
            F+ C KSI ++   +   ED+   L P A E++ ED ++L ++  + T+
Sbjct:  237 FYQCFKSIHEEKAKNEQHEDVQDILFPDAEEFIKEDFDDLMSTSAETTK 383
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BLAST of EMLSAG00000000313 vs. C. finmarchicus
Match: gi|592938382|gb|GAXK01020171.1| (TSA: Calanus finmarchicus comp12318_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 1.062e+0
Identity = 21/64 (32.81%), Postives = 29/64 (45.31%), Query Frame = 0 
Query:   48 HFWPCSKSIRDDYEDDI-SLEDITSYLHPGAHEYVDEDLEELNASILQKTQSLYILQDKTSTPD 110
            H W CS  I       + +  +  SYLHPG+H +         A +LQK  S+ I    + TPD
Sbjct: 1245 HLWFCSLQIGFGAAGQLGTASEGPSYLHPGSHVFP-------FAPMLQKKHSV*IAFPVSQTPD 1415
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BLAST of EMLSAG00000000313 vs. C. finmarchicus
Match: gi|592800188|gb|GAXK01154380.1| (TSA: Calanus finmarchicus comp2407621_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 9.338e+0
Identity = 17/55 (30.91%), Postives = 32/55 (58.18%), Query Frame = 0 
Query:   53 SKSIRDDYEDDISLEDITSYLHPGAHEYVD-------EDLEELNASILQKTQSLY 100
            +++IRD+ +DD  +E + +    G+ EY++       E+L E NAS+ ++  SL 
Sbjct:   72 NEAIRDESDDDRQVEQVVNVNSHGSKEYLELKYAKKIEELVEKNASMEKERDSLM 236
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BLAST of EMLSAG00000000313 vs. L. salmonis peptides
Match: EMLSAP00000000313 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1046:42189:42921:1 gene:EMLSAG00000000313 transcript:EMLSAT00000000313 description:"maker-LSalAtl2s1046-augustus-gene-0.10")

HSP 1 Score: 294.278 bits (752), Expect = 3.998e-103
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 
Query:    1 MDIVKVQNNYIGPTEEDTDDEDSMINSSSDDSILRTRATCFLSSLVPHFWPCSKSIRDDYEDDISLEDITSYLHPGAHEYVDEDLEELNASILQKTQSLYILQDKTSTPDKLFTGVLIASXAIAILVLFIYQNFGSGNLGKRHQ 144
            MDIVKVQNNYIGPTEEDTDDEDSMINSSSDDSILRTRATCFLSSLVPHFWPCSKSIRDDYEDDISLEDITSYLHPGAHEYVDEDLEELNASILQKTQSLYILQDKTSTPDKLFTGVLIASXAIAILVLFIYQNFGSGNLGKRHQ
Sbjct:    1 MDIVKVQNNYIGPTEEDTDDEDSMINSSSDDSILRTRATCFLSSLVPHFWPCSKSIRDDYEDDISLEDITSYLHPGAHEYVDEDLEELNASILQKTQSLYILQDKTSTPDKLFTGVLIASXAIAILVLFIYQNFGSGNLGKRHQ 144
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BLAST of EMLSAG00000000313 vs. L. salmonis peptides
Match: EMLSAP00000010947 (pep:novel supercontig:LSalAtl2s:LSalAtl2s733:22531:26494:-1 gene:EMLSAG00000010947 transcript:EMLSAT00000010947 description:"maker-LSalAtl2s733-augustus-gene-0.3")

HSP 1 Score: 114.005 bits (284), Expect = 1.561e-32
Identity = 67/124 (54.03%), Postives = 87/124 (70.16%), Query Frame = 0 
Query:   20 DEDSMINSSSDDSILRTRATCFLSSLVPHFWPCSKSIRDDYEDDISLEDITSYLHPGAHEYVDEDLEELNASILQKTQSLYILQDKTSTPDKLFTGVLIASXAIAILVLFIYQNFGSGNLGKRH 143
            D+D  IN   D    +++   F+S ++    P SK+   + ED +SLED+TSYLHPGA EY++EDL  +N SIL+KT   YIL DKTSTPDK+FTGVLI S AIAI++LF+YQNFG G L + H
Sbjct:   13 DDDGAINMKFD--FTKSKYDRFIS-MISSVLPLSKNPEIEIEDTLSLEDLTSYLHPGAQEYINEDLGGINRSILEKTPRWYILPDKTSTPDKIFTGVLIISTAIAIIILFVYQNFGPGLLKRTH 133
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000313 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000313 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592917681|gb|GAXK01040694.1|2.803e-130.61TSA: Calanus finmarchicus comp419332_c2_seq1 trans... [more]
gi|592938382|gb|GAXK01020171.1|1.062e+032.81TSA: Calanus finmarchicus comp12318_c0_seq1 transc... [more]
gi|592800188|gb|GAXK01154380.1|9.338e+030.91TSA: Calanus finmarchicus comp2407621_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000313 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000003133.998e-103100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1046:4218... [more]
EMLSAP000000109471.561e-3254.03pep:novel supercontig:LSalAtl2s:LSalAtl2s733:22531... [more]
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BLAST of EMLSAG00000000313 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000313 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000313 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000313 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1046supercontigLSalAtl2s1046:42189..42921 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1046-augustus-gene-0.10
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000313 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000313EMLSAT00000000313-696160Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1046:42189..42921+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000313-683079 ID=EMLSAG00000000313-683079|Name=EMLSAG00000000313|organism=Lepeophtheirus salmonis|type=gene|length=733bp|location=Sequence derived from alignment at LSalAtl2s1046:42189..42921+ (Lepeophtheirus salmonis)
AAAATGTCTACCTTGGTTATGTAGATTGCCAACTGAATTTTTTATTGTTA
TTATACACGCACGCACCGGGAGAGAGCTTTTATTTACGCCCCCACCTATT
ACATCATTCCACACAATAATGAATAATGTTTTTTATTTTTCAAATAATTT
TATAATATCCTTTGACTAAACTTCAGGNAACGTGCGCTTCAGTAATGTGG
AATCAATGGATATCGTCAAGGTACAAAATAACTATATTGGTCCAACAGAA
GAGGATACGGACGATGAGGATTCGATGATAAATAGTTCCTCAGATGATTC
CATCCTAAGTAAGTCCTTGACTTCATATTATAATCCTCATCAATTTCTCT
TAATAATGTCTAGGAACAAGAGCGACATGTTTTCTCTCATCTCTAGTCCC
TCATTTCTGGCCCTGCTCCAAATCTATAAGAGATGACTACGAGGATGACA
TTTCTCTGGAGGATATCACATCTTATCTCCATCCAGGAGCTCATGAATAC
GTAGATGAGGATTTAGAGGAACTCAACGCCTCAATCCTACAGAAAACTCA
GAGTCTATACATTCTTCAAGATAAAACATCCACCCCAGACAAACTCTTTA
CTGGAGTTCTCATTGCCTCAKCAGCCATTGCTATTCTTGTACTTTTCATT
TATCAAAACTTTGGTTCAGGGAACCTTGGAAAAAGACATCAGTGAAGTGA
AGAGGTTTTCTTTTTTTTTTTTTTAGATTCAAA
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