EMLSAG00000000342, EMLSAG00000000342-683108 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000342 vs. GO
Match: - (symbol:fam207a "family with sequence similarity 207, member A" species:7955 "Danio rerio" [GO:0008150 "biological_process" evidence=ND] [GO:0005575 "cellular_component" evidence=ND] [GO:0003674 "molecular_function" evidence=ND] ZFIN:ZDB-GENE-060825-113 GeneTree:ENSGT00390000015709 HOVERGEN:HBG051241 OMA:PTYRASP OrthoDB:EOG7JX35Z TreeFam:TF336348 EMBL:BX548072 EMBL:CR847870 EMBL:CU633905 EMBL:BC122127 RefSeq:NP_001038831.1 UniGene:Dr.12509 Ensembl:ENSDART00000105776 GeneID:797099 KEGG:dre:797099 InParanoid:Q1LWH6 NextBio:20932859 PRO:PR:Q1LWH6 Uniprot:Q1LWH6) HSP 1 Score: 48.1358 bits (113), Expect = 2.683e-5 Identity = 35/121 (28.93%), Postives = 57/121 (47.11%), Query Frame = 0 Query: 122 RKEFLLNKLSEGAKKMKADRATSFRRKRAVIGDLDPMKDTLEAIDKVLEKDDSRRNRESKKKLKGKRGT------LKQKKRQNEFIKNASFF-EAVKNHPEYAKNPFSTICTHIENKVAAE 235 R+E LNK+S + + A RR V+GD+ P+ D L + ++L S+R R L K+ +K +++ SFF EA+KN P + NP + I H+ ++ E Sbjct: 122 RRERWLNKISVIKQDREQQAAAVRRRATPVVGDMRPLADALPELQQLLPSAQSQRRRSRNTALVKKKAETTDFARMKPAQKRKHLETEVSFFSEALKN-PSFKINPLAAIGDHLRKRLKQE 241
BLAST of EMLSAG00000000342 vs. C. finmarchicus
Match: gi|592792552|gb|GAXK01162016.1| (TSA: Calanus finmarchicus comp35809_c0_seq1 transcribed RNA sequence) HSP 1 Score: 43.5134 bits (101), Expect = 2.695e-4 Identity = 13/36 (36.11%), Postives = 22/36 (61.11%), Query Frame = 0 Query: 199 EFIKNASFFEAVKNHPEYAKNPFSTICTHIENKVAA 234 +F+K+ F +A HP+Y NP T+ TH++N + Sbjct: 64 QFMKDMEFLKAASQHPDYVANPIKTVTTHLQNSIGV 171
BLAST of EMLSAG00000000342 vs. C. finmarchicus
Match: gi|592906428|gb|GAXK01051947.1| (TSA: Calanus finmarchicus comp29516_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 8.824e+0 Identity = 14/36 (38.89%), Postives = 20/36 (55.56%), Query Frame = 0 Query: 214 PEYAKNPFSTIC-------THIENKVAAEHLEKVNN 242 PEY F+T+C HIE+K AA+ ++KV Sbjct: 1655 PEYVSAEFTTLCNDVINIHPHIESKTAADEIKKVTG 1762
BLAST of EMLSAG00000000342 vs. L. salmonis peptides
Match: EMLSAP00000000342 (pep:novel supercontig:LSalAtl2s:LSalAtl2s104:670440:671368:-1 gene:EMLSAG00000000342 transcript:EMLSAT00000000342 description:"maker-LSalAtl2s104-snap-gene-6.29") HSP 1 Score: 499.59 bits (1285), Expect = 1.038e-180 Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0 Query: 1 MKNQLKQMNLYESKGFDSNNLMYYLFSATMGRLNKKLTLTKKANVASSTKDTKLSMSRIKNMTSLDLITLKKSSKIPQESTDILMLSARKLPEFTIQHNIKKEKPGVSLSRKMKKSDKMKVRKEFLLNKLSEGAKKMKADRATSFRRKRAVIGDLDPMKDTLEAIDKVLEKDDSRRNRESKKKLKGKRGTLKQKKRQNEFIKNASFFEAVKNHPEYAKNPFSTICTHIENKVAAEHLEKVNNCGNEG 247 MKNQLKQMNLYESKGFDSNNLMYYLFSATMGRLNKKLTLTKKANVASSTKDTKLSMSRIKNMTSLDLITLKKSSKIPQESTDILMLSARKLPEFTIQHNIKKEKPGVSLSRKMKKSDKMKVRKEFLLNKLSEGAKKMKADRATSFRRKRAVIGDLDPMKDTLEAIDKVLEKDDSRRNRESKKKLKGKRGTLKQKKRQNEFIKNASFFEAVKNHPEYAKNPFSTICTHIENKVAAEHLEKVNNCGNEG Sbjct: 1 MKNQLKQMNLYESKGFDSNNLMYYLFSATMGRLNKKLTLTKKANVASSTKDTKLSMSRIKNMTSLDLITLKKSSKIPQESTDILMLSARKLPEFTIQHNIKKEKPGVSLSRKMKKSDKMKVRKEFLLNKLSEGAKKMKADRATSFRRKRAVIGDLDPMKDTLEAIDKVLEKDDSRRNRESKKKLKGKRGTLKQKKRQNEFIKNASFFEAVKNHPEYAKNPFSTICTHIENKVAAEHLEKVNNCGNEG 247
BLAST of EMLSAG00000000342 vs. Select Arthropod Genomes
Match: EDO63940.1 (AGAP006619-PA [Anopheles gambiae str. PEST]) HSP 1 Score: 53.9138 bits (128), Expect = 7.954e-8 Identity = 40/133 (30.08%), Postives = 70/133 (52.63%), Query Frame = 0 Query: 107 VSLSRKMKKSDKMKVRKEFLLNKLSEGAKKMKADRATSFRRKRAVIGDLDPMKDTLEAIDKVLEKDDS---------RRNRESKKKLKGKRGTLKQKKRQNEFIKNASFFEAVKNHPEYAKNPFSTICTHIEN 230 +++SR + K +K + RKE +L K+ + K D+ R + AV GD+ P+ D L ++D + E + + +R+++ K K +R T + K+R+ EF+K S + V N + K+P I HI N Sbjct: 98 LAISR-LSKKEKKQFRKEEMLKKVQLTKQAFKQDKERKKREQTAVTGDMRPLLDALPSLDSLFEVKTAATVMKTGVPKYDRKAEPKTKKERRTQRLKQRKKEFLKRCSTIKRVLNDTTFKKDPKKMIADHIRN 229
BLAST of EMLSAG00000000342 vs. nr
Match: gi|260786381|ref|XP_002588236.1| (hypothetical protein BRAFLDRAFT_86681 [Branchiostoma floridae] >gi|229273396|gb|EEN44247.1| hypothetical protein BRAFLDRAFT_86681 [Branchiostoma floridae]) HSP 1 Score: 69.707 bits (169), Expect = 7.236e-11 Identity = 42/124 (33.87%), Postives = 67/124 (54.03%), Query Frame = 0 Query: 112 KMKKSDKMKVRKEFLLNKLSEGAKKMKADRATSFRRKRAVIGDLDPMKDTLEAIDKVLEKDDSRRNRESKKKLKGKRGTLKQKKRQNEFIKNASFFEAVKNHPEYAKNPFSTICTHIENKVAAE 235 ++ K DK K R + L KL + + T R++ AV+GD+ P+KD L + LE+ ++K + K GTLK K+R+ + S F+ + HP+Y NP STI H++NK++ E Sbjct: 87 RVSKKDKRKSRHDAFLQKLEAAHTAKRKAKETKKRQQTAVVGDMQPLKDALPQLTAFLEQQQGGTAAAGQEKQE-KEGTLKPKERKRIEQEELSRFQQILQHPQYRHNPVSTIMEHLKNKLSKE 209
BLAST of EMLSAG00000000342 vs. nr
Match: gi|957846668|ref|XP_014673807.1| (PREDICTED: protein FAM207A-like [Priapulus caudatus]) HSP 1 Score: 68.5514 bits (166), Expect = 2.362e-10 Identity = 43/130 (33.08%), Postives = 71/130 (54.62%), Query Frame = 0 Query: 110 SRKMKKSDKMKVRKEFLLNKLSEGAKKMKADRATSFRRKR--AVIGDLDPMKDTLEAIDKVLEKDDSRRNRESKKKLKGKRGTLKQKKRQNEFIKNASFFEAVKNHPEYAKNPFSTICTHIENKVAAEHL 237 S +MKK DK K R + L K+ GA ++ + RR+ ++GDL P++D L +D +L K+ R E ++ + T K++Q + +++ F+ V NHPEY KNP I H++NK+ + L Sbjct: 94 SVQMKKKDKRKERHDAWLQKV--GAITQAKEKQKTARRRANLPIVGDLKPLEDALPTLDLLL-KESGRGKMERNEEPIKVKWTRSVKQKQKQMMEDMKTFQQVLNHPEYQKNPLGVISLHLKNKIQEQTL 220
BLAST of EMLSAG00000000342 vs. nr
Match: gi|1126165060|ref|XP_019614294.1| (PREDICTED: protein FAM207A-like [Branchiostoma belcheri]) HSP 1 Score: 67.3958 bits (163), Expect = 4.308e-10 Identity = 41/125 (32.80%), Postives = 67/125 (53.60%), Query Frame = 0 Query: 112 KMKKSDKMKVRKEFLLNKLSEGAKKMKADRATSFRRKRAVIGDLDPMKDTLEAIDKVLEKDDSRRNRESKKKLKGKRGTLKQKKRQNEFIKNASFFEAVKNHPEYAKNPFSTICTHIENKVAAEH 236 ++ K DK K+R + L KL + + T R++ AV+GD+ P+KD L + LE+ + ++ K K+GTLK K+R + S F+ + HP+Y + P STI H+ NK++ E Sbjct: 87 RISKKDKRKMRHDVFLQKLEAAHTAKRKAKETKRRQQTAVVGDMQPLKDALPQLTAFLEQQQG--GAAAAEEKKEKQGTLKPKERNRIEQEELSRFQQILQHPQYRQRPVSTIMEHLRNKLSKEQ 209
BLAST of EMLSAG00000000342 vs. nr
Match: gi|762151771|ref|XP_011413878.1| (PREDICTED: ribosome biogenesis protein slx9-like isoform X2 [Crassostrea gigas] >gi|762151773|ref|XP_011413879.1| PREDICTED: ribosome biogenesis protein slx9-like isoform X2 [Crassostrea gigas]) HSP 1 Score: 62.003 bits (149), Expect = 3.594e-8 Identity = 36/112 (32.14%), Postives = 60/112 (53.57%), Query Frame = 0 Query: 124 EFLLNKLSEGAKKMKADRATSFRRKRAVIGDLDPMKDTLEAIDKVLEKDDSRRNRESKKKLKGKRGTLKQKKRQNEFIKNASFFEAVKNHPEYAKNPFSTICTHIENKVAAE 235 E L+ KL KA + ++ V+GD+ + + L +D +L+ D+ ++ +K+K R K+KKRQ + +K+ F V HP YA+NP TI H++NK+ E Sbjct: 94 ELLVQKLDAVEAAKKAAKEKKKKQSTPVVGDIGLLGEALPTLDMLLKSDEHKKKESNKEK---PRSIPKEKKRQKQMMKDIELFRQVYTHPSYAENPRGTIHEHLQNKLKQE 202
BLAST of EMLSAG00000000342 vs. nr
Match: gi|762151769|ref|XP_011413877.1| (PREDICTED: ribosome biogenesis protein slx9-like isoform X1 [Crassostrea gigas]) HSP 1 Score: 62.003 bits (149), Expect = 3.651e-8 Identity = 36/112 (32.14%), Postives = 60/112 (53.57%), Query Frame = 0 Query: 124 EFLLNKLSEGAKKMKADRATSFRRKRAVIGDLDPMKDTLEAIDKVLEKDDSRRNRESKKKLKGKRGTLKQKKRQNEFIKNASFFEAVKNHPEYAKNPFSTICTHIENKVAAE 235 E L+ KL KA + ++ V+GD+ + + L +D +L+ D+ ++ +K+K R K+KKRQ + +K+ F V HP YA+NP TI H++NK+ E Sbjct: 98 ELLVQKLDAVEAAKKAAKEKKKKQSTPVVGDIGLLGEALPTLDMLLKSDEHKKKESNKEK---PRSIPKEKKRQKQMMKDIELFRQVYTHPSYAENPRGTIHEHLQNKLKQE 206 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000342 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 1
BLAST of EMLSAG00000000342 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 2
BLAST of EMLSAG00000000342 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000342 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000342 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 1
BLAST of EMLSAG00000000342 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 5
BLAST of EMLSAG00000000342 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s104:670440..671368- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000342-683108 ID=EMLSAG00000000342-683108|Name=EMLSAG00000000342|organism=Lepeophtheirus salmonis|type=gene|length=929bp|location=Sequence derived from alignment at LSalAtl2s104:670440..671368- (Lepeophtheirus salmonis)back to top Add to Basket
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