EMLSAG00000000342, EMLSAG00000000342-683108 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000342
Unique NameEMLSAG00000000342-683108
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000342 vs. GO
Match: - (symbol:fam207a "family with sequence similarity 207, member A" species:7955 "Danio rerio" [GO:0008150 "biological_process" evidence=ND] [GO:0005575 "cellular_component" evidence=ND] [GO:0003674 "molecular_function" evidence=ND] ZFIN:ZDB-GENE-060825-113 GeneTree:ENSGT00390000015709 HOVERGEN:HBG051241 OMA:PTYRASP OrthoDB:EOG7JX35Z TreeFam:TF336348 EMBL:BX548072 EMBL:CR847870 EMBL:CU633905 EMBL:BC122127 RefSeq:NP_001038831.1 UniGene:Dr.12509 Ensembl:ENSDART00000105776 GeneID:797099 KEGG:dre:797099 InParanoid:Q1LWH6 NextBio:20932859 PRO:PR:Q1LWH6 Uniprot:Q1LWH6)

HSP 1 Score: 48.1358 bits (113), Expect = 2.683e-5
Identity = 35/121 (28.93%), Postives = 57/121 (47.11%), Query Frame = 0
Query:  122 RKEFLLNKLSEGAKKMKADRATSFRRKRAVIGDLDPMKDTLEAIDKVLEKDDSRRNRESKKKLKGKRGT------LKQKKRQNEFIKNASFF-EAVKNHPEYAKNPFSTICTHIENKVAAE 235
            R+E  LNK+S   +  +   A   RR   V+GD+ P+ D L  + ++L    S+R R     L  K+        +K  +++       SFF EA+KN P +  NP + I  H+  ++  E
Sbjct:  122 RRERWLNKISVIKQDREQQAAAVRRRATPVVGDMRPLADALPELQQLLPSAQSQRRRSRNTALVKKKAETTDFARMKPAQKRKHLETEVSFFSEALKN-PSFKINPLAAIGDHLRKRLKQE 241          
BLAST of EMLSAG00000000342 vs. C. finmarchicus
Match: gi|592792552|gb|GAXK01162016.1| (TSA: Calanus finmarchicus comp35809_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 43.5134 bits (101), Expect = 2.695e-4
Identity = 13/36 (36.11%), Postives = 22/36 (61.11%), Query Frame = 0
Query:  199 EFIKNASFFEAVKNHPEYAKNPFSTICTHIENKVAA 234
            +F+K+  F +A   HP+Y  NP  T+ TH++N +  
Sbjct:   64 QFMKDMEFLKAASQHPDYVANPIKTVTTHLQNSIGV 171          
BLAST of EMLSAG00000000342 vs. C. finmarchicus
Match: gi|592906428|gb|GAXK01051947.1| (TSA: Calanus finmarchicus comp29516_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 8.824e+0
Identity = 14/36 (38.89%), Postives = 20/36 (55.56%), Query Frame = 0
Query:  214 PEYAKNPFSTIC-------THIENKVAAEHLEKVNN 242
            PEY    F+T+C        HIE+K AA+ ++KV  
Sbjct: 1655 PEYVSAEFTTLCNDVINIHPHIESKTAADEIKKVTG 1762          
BLAST of EMLSAG00000000342 vs. L. salmonis peptides
Match: EMLSAP00000000342 (pep:novel supercontig:LSalAtl2s:LSalAtl2s104:670440:671368:-1 gene:EMLSAG00000000342 transcript:EMLSAT00000000342 description:"maker-LSalAtl2s104-snap-gene-6.29")

HSP 1 Score: 499.59 bits (1285), Expect = 1.038e-180
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0
Query:    1 MKNQLKQMNLYESKGFDSNNLMYYLFSATMGRLNKKLTLTKKANVASSTKDTKLSMSRIKNMTSLDLITLKKSSKIPQESTDILMLSARKLPEFTIQHNIKKEKPGVSLSRKMKKSDKMKVRKEFLLNKLSEGAKKMKADRATSFRRKRAVIGDLDPMKDTLEAIDKVLEKDDSRRNRESKKKLKGKRGTLKQKKRQNEFIKNASFFEAVKNHPEYAKNPFSTICTHIENKVAAEHLEKVNNCGNEG 247
            MKNQLKQMNLYESKGFDSNNLMYYLFSATMGRLNKKLTLTKKANVASSTKDTKLSMSRIKNMTSLDLITLKKSSKIPQESTDILMLSARKLPEFTIQHNIKKEKPGVSLSRKMKKSDKMKVRKEFLLNKLSEGAKKMKADRATSFRRKRAVIGDLDPMKDTLEAIDKVLEKDDSRRNRESKKKLKGKRGTLKQKKRQNEFIKNASFFEAVKNHPEYAKNPFSTICTHIENKVAAEHLEKVNNCGNEG
Sbjct:    1 MKNQLKQMNLYESKGFDSNNLMYYLFSATMGRLNKKLTLTKKANVASSTKDTKLSMSRIKNMTSLDLITLKKSSKIPQESTDILMLSARKLPEFTIQHNIKKEKPGVSLSRKMKKSDKMKVRKEFLLNKLSEGAKKMKADRATSFRRKRAVIGDLDPMKDTLEAIDKVLEKDDSRRNRESKKKLKGKRGTLKQKKRQNEFIKNASFFEAVKNHPEYAKNPFSTICTHIENKVAAEHLEKVNNCGNEG 247          
BLAST of EMLSAG00000000342 vs. Select Arthropod Genomes
Match: EDO63940.1 (AGAP006619-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 53.9138 bits (128), Expect = 7.954e-8
Identity = 40/133 (30.08%), Postives = 70/133 (52.63%), Query Frame = 0
Query:  107 VSLSRKMKKSDKMKVRKEFLLNKLSEGAKKMKADRATSFRRKRAVIGDLDPMKDTLEAIDKVLEKDDS---------RRNRESKKKLKGKRGTLKQKKRQNEFIKNASFFEAVKNHPEYAKNPFSTICTHIEN 230
            +++SR + K +K + RKE +L K+    +  K D+    R + AV GD+ P+ D L ++D + E   +         + +R+++ K K +R T + K+R+ EF+K  S  + V N   + K+P   I  HI N
Sbjct:   98 LAISR-LSKKEKKQFRKEEMLKKVQLTKQAFKQDKERKKREQTAVTGDMRPLLDALPSLDSLFEVKTAATVMKTGVPKYDRKAEPKTKKERRTQRLKQRKKEFLKRCSTIKRVLNDTTFKKDPKKMIADHIRN 229          
BLAST of EMLSAG00000000342 vs. nr
Match: gi|260786381|ref|XP_002588236.1| (hypothetical protein BRAFLDRAFT_86681 [Branchiostoma floridae] >gi|229273396|gb|EEN44247.1| hypothetical protein BRAFLDRAFT_86681 [Branchiostoma floridae])

HSP 1 Score: 69.707 bits (169), Expect = 7.236e-11
Identity = 42/124 (33.87%), Postives = 67/124 (54.03%), Query Frame = 0
Query:  112 KMKKSDKMKVRKEFLLNKLSEGAKKMKADRATSFRRKRAVIGDLDPMKDTLEAIDKVLEKDDSRRNRESKKKLKGKRGTLKQKKRQNEFIKNASFFEAVKNHPEYAKNPFSTICTHIENKVAAE 235
            ++ K DK K R +  L KL       +  + T  R++ AV+GD+ P+KD L  +   LE+         ++K + K GTLK K+R+    +  S F+ +  HP+Y  NP STI  H++NK++ E
Sbjct:   87 RVSKKDKRKSRHDAFLQKLEAAHTAKRKAKETKKRQQTAVVGDMQPLKDALPQLTAFLEQQQGGTAAAGQEKQE-KEGTLKPKERKRIEQEELSRFQQILQHPQYRHNPVSTIMEHLKNKLSKE 209          
BLAST of EMLSAG00000000342 vs. nr
Match: gi|957846668|ref|XP_014673807.1| (PREDICTED: protein FAM207A-like [Priapulus caudatus])

HSP 1 Score: 68.5514 bits (166), Expect = 2.362e-10
Identity = 43/130 (33.08%), Postives = 71/130 (54.62%), Query Frame = 0
Query:  110 SRKMKKSDKMKVRKEFLLNKLSEGAKKMKADRATSFRRKR--AVIGDLDPMKDTLEAIDKVLEKDDSRRNRESKKKLKGKRGTLKQKKRQNEFIKNASFFEAVKNHPEYAKNPFSTICTHIENKVAAEHL 237
            S +MKK DK K R +  L K+  GA     ++  + RR+    ++GDL P++D L  +D +L K+  R   E  ++    + T   K++Q + +++   F+ V NHPEY KNP   I  H++NK+  + L
Sbjct:   94 SVQMKKKDKRKERHDAWLQKV--GAITQAKEKQKTARRRANLPIVGDLKPLEDALPTLDLLL-KESGRGKMERNEEPIKVKWTRSVKQKQKQMMEDMKTFQQVLNHPEYQKNPLGVISLHLKNKIQEQTL 220          
BLAST of EMLSAG00000000342 vs. nr
Match: gi|1126165060|ref|XP_019614294.1| (PREDICTED: protein FAM207A-like [Branchiostoma belcheri])

HSP 1 Score: 67.3958 bits (163), Expect = 4.308e-10
Identity = 41/125 (32.80%), Postives = 67/125 (53.60%), Query Frame = 0
Query:  112 KMKKSDKMKVRKEFLLNKLSEGAKKMKADRATSFRRKRAVIGDLDPMKDTLEAIDKVLEKDDSRRNRESKKKLKGKRGTLKQKKRQNEFIKNASFFEAVKNHPEYAKNPFSTICTHIENKVAAEH 236
            ++ K DK K+R +  L KL       +  + T  R++ AV+GD+ P+KD L  +   LE+        + ++ K K+GTLK K+R     +  S F+ +  HP+Y + P STI  H+ NK++ E 
Sbjct:   87 RISKKDKRKMRHDVFLQKLEAAHTAKRKAKETKRRQQTAVVGDMQPLKDALPQLTAFLEQQQG--GAAAAEEKKEKQGTLKPKERNRIEQEELSRFQQILQHPQYRQRPVSTIMEHLRNKLSKEQ 209          
BLAST of EMLSAG00000000342 vs. nr
Match: gi|762151771|ref|XP_011413878.1| (PREDICTED: ribosome biogenesis protein slx9-like isoform X2 [Crassostrea gigas] >gi|762151773|ref|XP_011413879.1| PREDICTED: ribosome biogenesis protein slx9-like isoform X2 [Crassostrea gigas])

HSP 1 Score: 62.003 bits (149), Expect = 3.594e-8
Identity = 36/112 (32.14%), Postives = 60/112 (53.57%), Query Frame = 0
Query:  124 EFLLNKLSEGAKKMKADRATSFRRKRAVIGDLDPMKDTLEAIDKVLEKDDSRRNRESKKKLKGKRGTLKQKKRQNEFIKNASFFEAVKNHPEYAKNPFSTICTHIENKVAAE 235
            E L+ KL       KA +    ++   V+GD+  + + L  +D +L+ D+ ++   +K+K    R   K+KKRQ + +K+   F  V  HP YA+NP  TI  H++NK+  E
Sbjct:   94 ELLVQKLDAVEAAKKAAKEKKKKQSTPVVGDIGLLGEALPTLDMLLKSDEHKKKESNKEK---PRSIPKEKKRQKQMMKDIELFRQVYTHPSYAENPRGTIHEHLQNKLKQE 202          
BLAST of EMLSAG00000000342 vs. nr
Match: gi|762151769|ref|XP_011413877.1| (PREDICTED: ribosome biogenesis protein slx9-like isoform X1 [Crassostrea gigas])

HSP 1 Score: 62.003 bits (149), Expect = 3.651e-8
Identity = 36/112 (32.14%), Postives = 60/112 (53.57%), Query Frame = 0
Query:  124 EFLLNKLSEGAKKMKADRATSFRRKRAVIGDLDPMKDTLEAIDKVLEKDDSRRNRESKKKLKGKRGTLKQKKRQNEFIKNASFFEAVKNHPEYAKNPFSTICTHIENKVAAE 235
            E L+ KL       KA +    ++   V+GD+  + + L  +D +L+ D+ ++   +K+K    R   K+KKRQ + +K+   F  V  HP YA+NP  TI  H++NK+  E
Sbjct:   98 ELLVQKLDAVEAAKKAAKEKKKKQSTPVVGDIGLLGEALPTLDMLLKSDEHKKKESNKEK---PRSIPKEKKRQKQMMKDIELFRQVYTHPSYAENPRGTIHEHLQNKLKQE 206          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000342 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-2.683e-528.93symbol:fam207a "family with sequence similarity 20... [more]
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BLAST of EMLSAG00000000342 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592792552|gb|GAXK01162016.1|2.695e-436.11TSA: Calanus finmarchicus comp35809_c0_seq1 transc... [more]
gi|592906428|gb|GAXK01051947.1|8.824e+038.89TSA: Calanus finmarchicus comp29516_c0_seq1 transc... [more]
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BLAST of EMLSAG00000000342 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000003421.038e-180100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s104:67044... [more]
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BLAST of EMLSAG00000000342 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000342 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 1
Match NameE-valueIdentityDescription
EDO63940.17.954e-830.08AGAP006619-PA [Anopheles gambiae str. PEST][more]
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BLAST of EMLSAG00000000342 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 5
Match NameE-valueIdentityDescription
gi|260786381|ref|XP_002588236.1|7.236e-1133.87hypothetical protein BRAFLDRAFT_86681 [Branchiosto... [more]
gi|957846668|ref|XP_014673807.1|2.362e-1033.08PREDICTED: protein FAM207A-like [Priapulus caudatu... [more]
gi|1126165060|ref|XP_019614294.1|4.308e-1032.80PREDICTED: protein FAM207A-like [Branchiostoma bel... [more]
gi|762151771|ref|XP_011413878.1|3.594e-832.14PREDICTED: ribosome biogenesis protein slx9-like i... [more]
gi|762151769|ref|XP_011413877.1|3.651e-832.14PREDICTED: ribosome biogenesis protein slx9-like i... [more]
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BLAST of EMLSAG00000000342 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s104supercontigLSalAtl2s104:670440..671368 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s104-snap-gene-6.29
Biotypeprotein_coding
EvidenceIEA
Notehypothetical protein BRAFLDRAFT_86681 [Branchiostoma floridae]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000342 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000342EMLSAT00000000342-696189Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s104:670440..671368-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000342-683108 ID=EMLSAG00000000342-683108|Name=EMLSAG00000000342|organism=Lepeophtheirus salmonis|type=gene|length=929bp|location=Sequence derived from alignment at LSalAtl2s104:670440..671368- (Lepeophtheirus salmonis)
ATGAAGAATCAGCTAAAGCAAATGAATCTATATGAGTAAAAGCATCAAGA ACCATGATAATTTTAATCTACTGATTGCATTTGTTTCACCACTAGATATT AATATAGATTTCTCTATAGGTTTCATAATATTTTATTTGAATATAGTTTG TATAATATAATTTTTATAATATTTTTTTTTTTAAATAGAAGTAAGGTTAA ATGTTGATAATCAGAATTATTTTTTAGGGATTTGATTCTAATAACTTGAT GTATTACTTGTTTTCAGCTACGATGGGTCGTCTCAATAAAAAGCTAACCC TAACTAAAAAGGCCAATGTCGCCTCATCTACTAAAGACACTAAGTTAAGT ATGTCTCGAATCAAGAACATGACATCTTTAGATCTGATCACCTTAAAAAA GTCTTCTAAAATTCCTCAAGAGAGTACAGACATTTTAATGCTTAGTGCTA GGAAATTGCCTGAGTTCACTATTCAACATAATATCAAAAAAGAGAAACCT GGTGTCTCCTTATCCCGGAAGATGAAAAAATCTGATAAGATGAAGGTTCG AAAAGAATTCTTACTAAATAAACTATCAGAAGGTGCCAAAAAAATGAAGG CAGACCGTGCTACTTCGTTTAGGAGGAAAAGAGCTGTTATAGGAGATTTG GACCCAATGAAAGACACCTTGGAAGCTATTGACAAAGTGTTGGAGAAGGA TGACTCCCGACGAAATCGAGAGTCAAAAAAGAAGCTCAAGGGGAAAAGAG GTACCTTAAAGCAGAAAAAGAGACAAAATGAATTTATTAAAAATGCTAGT TTCTTCGAGGCCGTCAAAAATCATCCAGAGTATGCTAAGAATCCGTTTTC AACTATATGCACTCATATAGAGAATAAAGTTGCTGCAGAACACTTGGAAA AAGTTAATAACTGCGGTAATGAAGGATAA
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