EMLSAG00000000396, EMLSAG00000000396-683162 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000396
Unique NameEMLSAG00000000396-683162
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000396 vs. L. salmonis peptides
Match: EMLSAP00000000396 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1063:105826:106746:-1 gene:EMLSAG00000000396 transcript:EMLSAT00000000396 description:"maker-LSalAtl2s1063-augustus-gene-0.40")

HSP 1 Score: 574.704 bits (1480), Expect = 0.000e+0
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0 
Query:    1 MDDHRPMLRRSLRRCRFFLDEILEHARLRRNLSEKELISMFRHSESVQKIIQASEKNPDLNYNLSIVFSENEIQSMRNSFKTLYLTLLNNLRLGESVLANVLKVTSKISHSVPCEDVFNENINCVRPLLIHLLEDHQHRKKVKAILLRNGIISLSGIESKMFVESGAFLTLIAALVHTKDQFFSKSFLSLPLTFLELEMALLFIQQSVELFVQAAQSHESLMIFVVKLTDKLLECRRNDVIHLLVDIFETASLNVSESLLGYLSKYKLDELQHEIYQILNQKLNYNN 287
            MDDHRPMLRRSLRRCRFFLDEILEHARLRRNLSEKELISMFRHSESVQKIIQASEKNPDLNYNLSIVFSENEIQSMRNSFKTLYLTLLNNLRLGESVLANVLKVTSKISHSVPCEDVFNENINCVRPLLIHLLEDHQHRKKVKAILLRNGIISLSGIESKMFVESGAFLTLIAALVHTKDQFFSKSFLSLPLTFLELEMALLFIQQSVELFVQAAQSHESLMIFVVKLTDKLLECRRNDVIHLLVDIFETASLNVSESLLGYLSKYKLDELQHEIYQILNQKLNYNN
Sbjct:    1 MDDHRPMLRRSLRRCRFFLDEILEHARLRRNLSEKELISMFRHSESVQKIIQASEKNPDLNYNLSIVFSENEIQSMRNSFKTLYLTLLNNLRLGESVLANVLKVTSKISHSVPCEDVFNENINCVRPLLIHLLEDHQHRKKVKAILLRNGIISLSGIESKMFVESGAFLTLIAALVHTKDQFFSKSFLSLPLTFLELEMALLFIQQSVELFVQAAQSHESLMIFVVKLTDKLLECRRNDVIHLLVDIFETASLNVSESLLGYLSKYKLDELQHEIYQILNQKLNYNN 287
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000396 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000396 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000396 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000003960.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1063:1058... [more]
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BLAST of EMLSAG00000000396 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000396 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000396 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000396 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1063supercontigLSalAtl2s1063:105826..106746 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1063-augustus-gene-0.40
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000396 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000396EMLSAT00000000396-696243Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1063:105826..106746-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000396-683162 ID=EMLSAG00000000396-683162|Name=EMLSAG00000000396|organism=Lepeophtheirus salmonis|type=gene|length=921bp|location=Sequence derived from alignment at LSalAtl2s1063:105826..106746- (Lepeophtheirus salmonis)
ATGGACGATCATAGGCCCATGCTCCGAAGATCACTTAGGAGATGTCGTTT
CTTTCTAGATGAGATCCTTGAGCATGCAAGACTACGAAGAAATTTATCTG
AGAAAGAGCTTATCTCCATGTTTAGACACTCTGAATCCGTTCAAAAAATC
ATACAAGCATCTGAAAAAGTAGCGATTTCCGCCCTTGATTCTAACATCTA
AATTCCTTATATCCTTCATTTGCAGAACCCTGATTTAAATTATAATCTTA
GCATTGTATTCAGTGAGAATGAGATACAGAGTATGAGGAATTCATTCAAG
ACGCTTTATCTTACTTTATTGAACAATTTGCGCCTTGGGGAGTCCGTTCT
GGCCAATGTTCTCAAGGTGACCTCTAAAATATCCCATTCTGTCCCTTGTG
AAGACGTCTTCAATGAGAATATCAATTGTGTCCGTCCCTTATTGATTCAT
CTCTTAGAGGATCATCAGCATAGAAAAAAAGTGAAGGCAATTTTGTTAAG
AAACGGGATTATTTCTCTGAGCGGCATTGAATCTAAAATGTTCGTCGAAT
CAGGAGCCTTTTTGACACTTATAGCTGCCCTTGTCCATACAAAGGATCAA
TTTTTTTCTAAAAGCTTTTTGAGTCTTCCCTTAACGTTTCTGGAATTGGA
AATGGCTCTACTGTTCATTCAGCAAAGTGTGGAACTCTTTGTCCAAGCCG
CTCAAAGCCACGAATCCCTCATGATATTTGTGGTGAAACTCACAGACAAG
TTGCTAGAGTGTAGAAGAAATGATGTGATTCATTTATTGGTGGATATTTT
TGAGACAGCATCATTGAATGTATCTGAAAGTTTATTGGGATATCTGAGCA
AATACAAGTTGGATGAACTACAGCATGAAATTTACCAAATACTAAATCAA
AAGTTGAATTATAATAATTAA
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