EMLSAG00000000426, EMLSAG00000000426-683192 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000426
Unique NameEMLSAG00000000426-683192
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: female reproduction, shorter eggstrings
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
Z F214 426 female
  1. PreAdult2
  2. Adult
 Many bad and short eggstrings. Check hatching numbers
female reproduction, shorter eggstrings 		27.08.2015 - 13:44
01.10.2015 - 00:00
Homology
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BLAST of EMLSAG00000000426 vs. L. salmonis peptides
Match: EMLSAP00000000426 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1068:102698:104348:-1 gene:EMLSAG00000000426 transcript:EMLSAT00000000426 description:"maker-LSalAtl2s1068-augustus-gene-1.19")

HSP 1 Score: 641.343 bits (1653), Expect = 0.000e+0
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 0 
Query:    1 MNEDYITVEVLGSDYENQWDLLAGVYKFRVSTFLKSLVFESKEKRVTIDRSLIKDYGIRSINKRKYYFFCLGSRSPFGKGEIILNSFDFDLDEFNNYALSLHANKSLSLKRSVSRKNGRIKSRTSSESDVTKQVSNLSKLFSKLFKSKKDRKKKLLKDRDSLTSKEDYSVVDEYSEILPSGYSGQTYLCTSEDLSDSESMGLVXPSPDFXTKSCKSFKKNNPKNHLKWHEQNEIYSEYAPSYLIPVEHETKHEVLVKETGDVYTLPMTKKKPRTLPKKSKIRLSKGSNIVDYYNEDSSAHLYYNCDNDLIEEEMCDNES 319
            MNEDYITVEVLGSDYENQWDLLAGVYKFRVSTFLKSLVFESKEKRVTIDRSLIKDYGIRSINKRKYYFFCLGSRSPFGKGEIILNSFDFDLDEFNNYALSLHANKSLSLKRSVSRKNGRIKSRTSSESDVTKQVSNLSKLFSKLFKSKKDRKKKLLKDRDSLTSKEDYSVVDEYSEILPSGYSGQTYLCTSEDLSDSESMGLVXPSPDFXTKSCKSFKKNNPKNHLKWHEQNEIYSEYAPSYLIPVEHETKHEVLVKETGDVYTLPMTKKKPRTLPKKSKIRLSKGSNIVDYYNEDSSAHLYYNCDNDLIEEEMCDNES
Sbjct:    1 MNEDYITVEVLGSDYENQWDLLAGVYKFRVSTFLKSLVFESKEKRVTIDRSLIKDYGIRSINKRKYYFFCLGSRSPFGKGEIILNSFDFDLDEFNNYALSLHANKSLSLKRSVSRKNGRIKSRTSSESDVTKQVSNLSKLFSKLFKSKKDRKKKLLKDRDSLTSKEDYSVVDEYSEILPSGYSGQTYLCTSEDLSDSESMGLVXPSPDFXTKSCKSFKKNNPKNHLKWHEQNEIYSEYAPSYLIPVEHETKHEVLVKETGDVYTLPMTKKKPRTLPKKSKIRLSKGSNIVDYYNEDSSAHLYYNCDNDLIEEEMCDNES 319
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000426 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000426 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000426 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000004260.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1068:1026... [more]
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BLAST of EMLSAG00000000426 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000426 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000426 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000426 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1068supercontigLSalAtl2s1068:102698..104348 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1068-augustus-gene-1.19
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000426 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000426EMLSAT00000000426-696273Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1068:102698..104348-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000426-683192 ID=EMLSAG00000000426-683192|Name=EMLSAG00000000426|organism=Lepeophtheirus salmonis|type=gene|length=1651bp|location=Sequence derived from alignment at LSalAtl2s1068:102698..104348- (Lepeophtheirus salmonis)
ATGAATGAAGACTACATTACAGTGGAAGTGTTAGGCTCAGACTATGAGAA
TCAGTGGGATTTGCTTGCAGGAGTGTATAAATTTAGGGTTTCCACCTTTT
TAAAAAGTCTTGTATTTGAATCCAAAGAAAAAAGAGTGACCATTGATCGT
TCTCTAATAAAAGACTATGGAATCAGATCAATCAATAAGTATATGAAATA
AAACTGAGCAACCTAACTAGTCTACTATAATAAACAAATTGTTATTTTCT
CAGGCGAAAATATTATTTCTTCTGCCTTGGGAGTAGGAGCCCCTTTGGTA
AGGGGGAAATTATCCTTAATAGTTTTGATTTTGATTTGGATGAATTTAAC
AATTATGTTCGTACACACATTAAGACAACTTCAAAAGTAAGTCGTTCTAT
CTTTTCCACATATATTGTATTTATATTATGTCTTGTACAAGTTGTTATAA
TTTATACGTCTTATTACGCTTTATTTAATTACATCATCACTCATTTTAAT
TACCAACTACCTGGATTTATCCATTTGGTTGTTTTTTATTTACGAATAAT
AAAATAACTAAGGGGCTTTGATTCTAATAATGTGACACAGAATACTACTA
AGTAATATTCATAAAAAAGATCAAAAATTACAGCATTAATATATCGAGCA
TCCATGGAATATTCAATTATTGCATTATCCTCACCACAAGTCCAATTTTC
TTTTACAAATTGAAATTAGAACTTGCACAAAATCGTAACTTGTACATTAK
ATATAAATACGAAACGGGGGGGGGGGTGAAATGATTATAATAATTTTCTT
AATTAACAAGTAGAATAATGATAATTTGCAGGCTCTATCACTCCNACATA
TAAATACAAACGGGGGGGGGGTGAATGATTATAATAATTTTYTTAATTAA
CAAGWAGAAWAATNATAATTTGCAGGCTCTATCACTCCATGCTAACAAAA
GTTTAAGCTTAAAACGATCAGTTTCTCGAAAAAATGGAAGAATTAAGTCA
AGAACAAGTTCAGAATCTGATGTTACCAAACAAGTTTCCAATTTATCCAA
ACTGTTTTCAAAATTGTTTAAGAGCAAAAAAGATAGGAAGAAAAAATTGT
TGAAGGATAGGTAATAGTACTGAGAGTTAAAATACCCATGGAAATGTTGT
GTTTTCTATAACTTTAGGGATTCGTTGACATCTAAAGAGGATTACTCAGT
TGTTGATGAATATTCGGAAATCTTACCAAGTGGCTATAGTGGTCAAACTT
ATCTCTGCACTTCTGAAGATTTATCGGATAGTGAATCTATGGGKCTTGTA
TTKCCTTCTCCYGATTTTWAGACAAAATCCTGCAAATCCTTTAAAAAAAA
TAATCCTAAAAACCATCTCAAATGGCATGAACAGAATGAAATTTACTCCG
AGTACGCTCCAAGTTATTTGATTCCTGTTGAGCATGAAACAAAACATGAA
GTTCTTGTAAAAGAAACAGGAGATGTCTACACCCTACCAATGACAAAGAA
AAAGCCAAGAACTTTGCCTAAAAAAAGTAAAATCAGGCTCAGTAAAGGCT
CRAACATCGTCGATTATTATAATGAAGATTCAAGTGCGCATCTATACTAT
AATTGTGATAATGATTTGATTGAGGAAGAAATGTGTGATAATGAATCATA
G
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