EMLSAG00000000504, EMLSAG00000000504-683270 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000504
Unique NameEMLSAG00000000504-683270
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
AC F230 504 female
  1. Adult
 -Missing-
-Missing- 		14.12.2015 - 14:23
25.01.2016 - 14:23
Homology
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BLAST of EMLSAG00000000504 vs. C. finmarchicus
Match: gi|592938468|gb|GAXK01020085.1| (TSA: Calanus finmarchicus comp12522_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 5.986e-1
Identity = 11/32 (34.38%), Postives = 17/32 (53.12%), Query Frame = 0 
Query:    4 PMVGTTQSGQVKKRCFGRRPRPRPSANLSVKD 35
             M+ +T  GQ+ +RCF  R      A + V+D
Sbjct:  119 EMINSTADGQITRRCFWNRINRSTCAYVCVQD 214
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BLAST of EMLSAG00000000504 vs. C. finmarchicus
Match: gi|592902111|gb|GAXK01056264.1| (TSA: Calanus finmarchicus comp429340_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 1.909e+0
Identity = 13/28 (46.43%), Postives = 17/28 (60.71%), Query Frame = 0 
Query:    3 NPMVGTTQSGQVKKRCFGRRPRPRPSAN 30
            N MVG  + G+ KK   G+R RPR + N
Sbjct:  589 NHMVGQRKRGRPKKIVNGKRGRPRKNVN 672
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BLAST of EMLSAG00000000504 vs. L. salmonis peptides
Match: EMLSAP00000000504 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1079:74856:75141:-1 gene:EMLSAG00000000504 transcript:EMLSAT00000000504 description:"maker-LSalAtl2s1079-augustus-gene-0.24")

HSP 1 Score: 149.828 bits (377), Expect = 2.001e-48
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 
Query:    1 MGNPMVGTTQSGQVKKRCFGRRPRPRPSANLSVKDLMDLIKMIMELAKKKGAEKRNIVSSPTMTHVKVLSESD 73
            MGNPMVGTTQSGQVKKRCFGRRPRPRPSANLSVKDLMDLIKMIMELAKKKGAEKRNIVSSPTMTHVKVLSESD
Sbjct:    1 MGNPMVGTTQSGQVKKRCFGRRPRPRPSANLSVKDLMDLIKMIMELAKKKGAEKRNIVSSPTMTHVKVLSESD 73
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000504 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000504 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592938468|gb|GAXK01020085.1|5.986e-134.38TSA: Calanus finmarchicus comp12522_c1_seq3 transc... [more]
gi|592902111|gb|GAXK01056264.1|1.909e+046.43TSA: Calanus finmarchicus comp429340_c1_seq3 trans... [more]
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BLAST of EMLSAG00000000504 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000005042.001e-48100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1079:7485... [more]
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BLAST of EMLSAG00000000504 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000504 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000504 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000504 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1079supercontigLSalAtl2s1079:74856..75141 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1079-augustus-gene-0.24
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000504 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000504EMLSAT00000000504-696351Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1079:74856..75141-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000504-683270 ID=EMLSAG00000000504-683270|Name=EMLSAG00000000504|organism=Lepeophtheirus salmonis|type=gene|length=286bp|location=Sequence derived from alignment at LSalAtl2s1079:74856..75141- (Lepeophtheirus salmonis)
ATGGGGAATCCAATGGTCGGAGTATGTTTAAGCTTATTGTTGTAAATAAA
TCTTTAATGTGTTTTTTTTTCATCTTTATTTGTAGACAACGCAATCTGGA
CAAGTGAAAAAGAGATGTTTCGGACGTAGACCAAGACCAAGACCATCAGC
AAATCTTAGTGTTAAGGACTTGATGGATTTAATAAAAATGATTATGGAAC
TTGCAAAAAAGAAAGGTGCTGAGAAAAGAAATATTGTTTCAAGTCCAACT
ATGACTCATGTTAAAGTACTCTCCGAGAGTGATTAA
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