EMLSAG00000000509, EMLSAG00000000509-683275 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000509 vs. GO
Match: - (symbol:atf5a "activating transcription factor 5a" species:7955 "Danio rerio" [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=IEA] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] InterPro:IPR004827 Pfam:PF00170 PROSITE:PS00036 PROSITE:PS50217 SMART:SM00338 ZFIN:ZDB-GENE-060526-205 GO:GO:0043565 GO:GO:0003700 GeneTree:ENSGT00530000063801 TreeFam:TF316136 eggNOG:NOG273999 OrthoDB:EOG7KWSHF EMBL:BX294389 EMBL:BC163255 EMBL:BC163282 RefSeq:NP_001122203.1 UniGene:Dr.114932 STRING:7955.ENSDARP00000089057 Ensembl:ENSDART00000098285 GeneID:566223 KEGG:dre:566223 CTD:566223 HOGENOM:HOG000205114 HOVERGEN:HBG095307 InParanoid:A2BFU3 OMA:NDIQVPS NextBio:20888088 PRO:PR:A2BFU3 Uniprot:A2BFU3) HSP 1 Score: 43.8986 bits (102), Expect = 1.125e-4 Identity = 22/60 (36.67%), Postives = 39/60 (65.00%), Query Frame = 0 Query: 46 ERRKIKKWQNIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLLQNKVSNLKKIL 105 ER++ K+ QN AA RYR RK+ E+++ Q+ LE N++L DK + ++ ++ +K +L Sbjct: 435 ERKQKKRDQNKTAAHRYRQRKRAELDSLEEQLHGLEGRNRELRDKAESVEREIQYVKDLL 494
BLAST of EMLSAG00000000509 vs. GO
Match: - (symbol:atf4b2 "activating transcription factor 4b2" species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=IEA] InterPro:IPR004827 Pfam:PF00170 PROSITE:PS00036 PROSITE:PS50217 SMART:SM00338 ZFIN:ZDB-GENE-070928-23 GO:GO:0043565 GO:GO:0003700 eggNOG:NOG325856 HOGENOM:HOG000004844 HOVERGEN:HBG004301 GeneTree:ENSGT00530000063801 TreeFam:TF316136 EMBL:CR812472 EMBL:BC151935 RefSeq:NP_001096662.1 UniGene:Dr.104781 STRING:7955.ENSDARP00000055608 Ensembl:ENSDART00000055609 GeneID:556410 KEGG:dre:556410 CTD:556410 OMA:WGPSSPM OrthoDB:EOG7F7W9Z NextBio:20881471 Uniprot:A7MBV8) HSP 1 Score: 41.5874 bits (96), Expect = 4.788e-4 Identity = 19/55 (34.55%), Postives = 35/55 (63.64%), Query Frame = 0 Query: 54 QNIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLLQNKVSNLKKILSRL 108 QN AA RYR +K+ E ET +++ +LE N++L +K + L ++ LK+++ + Sbjct: 360 QNKTAATRYRQKKRAEQETLLSECAVLEERNQELAEKAESLTKEIQYLKELMEEV 414
BLAST of EMLSAG00000000509 vs. C. finmarchicus
Match: gi|592785813|gb|GAXK01168755.1| (TSA: Calanus finmarchicus comp1141_c1_seq1 transcribed RNA sequence) HSP 1 Score: 45.0542 bits (105), Expect = 1.344e-5 Identity = 23/65 (35.38%), Postives = 40/65 (61.54%), Query Frame = 0 Query: 46 ERRKIKKWQNIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLLQNKVSNLKKILSRLGL 110 E+++ KK QN AA RYR++KK E + ++++L N L DK+ ++ + LKK+++ GL Sbjct: 449 EKKERKKAQNRTAAFRYREKKKSEQDIIDDELELLSTKNNVLKDKLTEMETEFKYLKKLMTEAGL 643
BLAST of EMLSAG00000000509 vs. C. finmarchicus
Match: gi|592785815|gb|GAXK01168753.1| (TSA: Calanus finmarchicus comp1141_c0_seq1 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 7.321e-4 Identity = 23/65 (35.38%), Postives = 40/65 (61.54%), Query Frame = 0 Query: 46 ERRKIKKWQNIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLLQNKVSNLKKILSRLGL 110 E+++ KK QN AA RYR++KK E + ++++L N L DK+ ++ + LKK+++ GL Sbjct: 1175 EKKERKKAQNRTAAFRYREKKKSEQDIIDDELELLSTKNNVLKDKLTEMETEFKYLKKLMTEAGL 1369
BLAST of EMLSAG00000000509 vs. C. finmarchicus
Match: gi|592779449|gb|GAXK01175119.1| (TSA: Calanus finmarchicus comp4500908_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 1.175e-1 Identity = 18/40 (45.00%), Postives = 27/40 (67.50%), Query Frame = 0 Query: 55 NIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLL 94 NIE +R YR KK E + ++T+++ LEA NKQL + + L Sbjct: 240 NIERSRNYRVEKKYEEKQALTELEELEARNKQLQENEEKL 359
BLAST of EMLSAG00000000509 vs. C. finmarchicus
Match: gi|592849950|gb|GAXK01107594.1| (TSA: Calanus finmarchicus comp37463_c0_seq4 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 1.638e-1 Identity = 19/57 (33.33%), Postives = 34/57 (59.65%), Query Frame = 0 Query: 52 KWQNIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLLQNKVSNLKKILSRL 108 KW+N++ R YR K ++ T+++ILEA N L + D L+ +V+ +K + +L Sbjct: 227 KWKNVKRCRDYRKNKTNKVTVEKTELEILEAHNLDLKIEEDTLKERVTRMKGMYIKL 397
BLAST of EMLSAG00000000509 vs. C. finmarchicus
Match: gi|592849951|gb|GAXK01107593.1| (TSA: Calanus finmarchicus comp37463_c0_seq3 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 1.643e-1 Identity = 19/57 (33.33%), Postives = 34/57 (59.65%), Query Frame = 0 Query: 52 KWQNIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLLQNKVSNLKKILSRL 108 KW+N++ R YR K ++ T+++ILEA N L + D L+ +V+ +K + +L Sbjct: 227 KWKNVKRCRDYRKNKTNKVTVEKTELEILEAHNLDLKIEEDTLKERVTRMKGMYIKL 397
BLAST of EMLSAG00000000509 vs. C. finmarchicus
Match: gi|592849952|gb|GAXK01107592.1| (TSA: Calanus finmarchicus comp37463_c0_seq2 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 1.647e-1 Identity = 19/57 (33.33%), Postives = 34/57 (59.65%), Query Frame = 0 Query: 52 KWQNIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLLQNKVSNLKKILSRL 108 KW+N++ R YR K ++ T+++ILEA N L + D L+ +V+ +K + +L Sbjct: 227 KWKNVKRCRDYRKNKTNKVTVEKTELEILEAHNLDLKIEEDTLKERVTRMKGMYIKL 397
BLAST of EMLSAG00000000509 vs. C. finmarchicus
Match: gi|592849953|gb|GAXK01107591.1| (TSA: Calanus finmarchicus comp37463_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 1.651e-1 Identity = 19/57 (33.33%), Postives = 34/57 (59.65%), Query Frame = 0 Query: 52 KWQNIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLLQNKVSNLKKILSRL 108 KW+N++ R YR K ++ T+++ILEA N L + D L+ +V+ +K + +L Sbjct: 227 KWKNVKRCRDYRKNKTNKVTVEKTELEILEAHNLDLKIEEDTLKERVTRMKGMYIKL 397
BLAST of EMLSAG00000000509 vs. C. finmarchicus
Match: gi|592945217|gb|GAXK01013336.1| (TSA: Calanus finmarchicus comp8798_c2_seq35 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 8.701e-1 Identity = 15/49 (30.61%), Postives = 30/49 (61.22%), Query Frame = 0 Query: 54 QNIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLLQNKVSNLK 102 +N A + YRDRKK + E + ++K LE N+ L K+ +++ + +++ Sbjct: 2390 KNNLACKFYRDRKKTKQEIADEELKTLEQKNELLNMKVRQMESIIKDIR 2536
BLAST of EMLSAG00000000509 vs. C. finmarchicus
Match: gi|592945218|gb|GAXK01013335.1| (TSA: Calanus finmarchicus comp8798_c2_seq34 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 8.703e-1 Identity = 15/49 (30.61%), Postives = 30/49 (61.22%), Query Frame = 0 Query: 54 QNIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLLQNKVSNLK 102 +N A + YRDRKK + E + ++K LE N+ L K+ +++ + +++ Sbjct: 2408 KNNLACKFYRDRKKTKQEIADEELKTLEQKNELLNMKVRQMESIIKDIR 2554
BLAST of EMLSAG00000000509 vs. C. finmarchicus
Match: gi|592945219|gb|GAXK01013334.1| (TSA: Calanus finmarchicus comp8798_c2_seq33 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 8.704e-1 Identity = 15/49 (30.61%), Postives = 30/49 (61.22%), Query Frame = 0 Query: 54 QNIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLLQNKVSNLK 102 +N A + YRDRKK + E + ++K LE N+ L K+ +++ + +++ Sbjct: 2411 KNNLACKFYRDRKKTKQEIADEELKTLEQKNELLNMKVRQMESIIKDIR 2557
BLAST of EMLSAG00000000509 vs. L. salmonis peptides
Match: EMLSAP00000000509 (pep:novel supercontig:LSalAtl2s:LSalAtl2s107:551831:553780:-1 gene:EMLSAG00000000509 transcript:EMLSAT00000000509 description:"maker-LSalAtl2s107-snap-gene-5.20") HSP 1 Score: 222.631 bits (566), Expect = 6.568e-76 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 Query: 1 MLGPGGPNLDSHRHHHLILSPSQLKSPPSPPLPLLLPKRGKRTLQERRKIKKWQNIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLLQNKVSNLKKILSRLGLLT 112 MLGPGGPNLDSHRHHHLILSPSQLKSPPSPPLPLLLPKRGKRTLQERRKIKKWQNIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLLQNKVSNLKKILSRLGLLT Sbjct: 1 MLGPGGPNLDSHRHHHLILSPSQLKSPPSPPLPLLLPKRGKRTLQERRKIKKWQNIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLLQNKVSNLKKILSRLGLLT 112
BLAST of EMLSAG00000000509 vs. L. salmonis peptides
Match: EMLSAP00000012360 (pep:novel supercontig:LSalAtl2s:LSalAtl2s903:209876:211074:-1 gene:EMLSAG00000012360 transcript:EMLSAT00000012360 description:"maker-LSalAtl2s903-augustus-gene-1.52") HSP 1 Score: 58.9214 bits (141), Expect = 1.291e-11 Identity = 32/97 (32.99%), Postives = 59/97 (60.82%), Query Frame = 0 Query: 29 SPPLPLLLPKRGKRT--------------LQERRKIKKWQNIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLLQNKVSNLKKILSRLGLL 111 SPP + PK+ K T ++++++ KKWQN+EAARRYRD+K+ ++ + K L+ N L +K+ ++N++S +KK+++ LG++ Sbjct: 214 SPPSSVTSPKQHKYTNRKENTKGGRQKLAIKDKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTELGMI 310
BLAST of EMLSAG00000000509 vs. L. salmonis peptides
Match: EMLSAP00000013057 (pep:novel supercontig:LSalAtl2s:LSalAtl2s9:635444:635917:1 gene:EMLSAG00000013057 transcript:EMLSAT00000013057 description:"snap_masked-LSalAtl2s9-processed-gene-6.7") HSP 1 Score: 43.5134 bits (101), Expect = 9.210e-7 Identity = 31/94 (32.98%), Postives = 55/94 (58.51%), Query Frame = 0 Query: 20 SPSQLKSPPSPPLPLLLPKR--GKRTLQERRKIKKWQNIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLLQNKVSNLKKILSRLGLL 111 SP+ P+ LP+L K G+R E R+ ++ N+ A R+ R++ K+ + +VKIL N++L K++LLQ ++S L+ + S +G+L Sbjct: 38 SPNSNLGSPNSLLPILKKKTAIGERCSDEYRRRRERNNV-AVRKSREKAKIRTRETEERVKILARENERLQKKVELLQEELSVLRSLFSNVGVL 130
BLAST of EMLSAG00000000509 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold263_size232787-snap-gene-1.27 (protein:Tk11207 transcript:maker-scaffold263_size232787-snap-gene-1.27-mRNA-1 annotation:"PREDICTED: uncharacterized protein LOC100905060 isoform 1") HSP 1 Score: 50.447 bits (119), Expect = 9.100e-9 Identity = 28/72 (38.89%), Postives = 45/72 (62.50%), Query Frame = 0 Query: 40 GKRTLQERRKIKKWQNIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLLQNKVSNLKKILSRLGLL 111 + ++++++ KK QN+EAARRYRD+KK+E T L N+ L +M L+ +V LKK++ LGL+ Sbjct: 294 AQYNVKDKKERKKLQNVEAARRYRDKKKVEQITIEDVEGDLMKTNESLKSQMSDLEGEVKTLKKLMLELGLI 365 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000509 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 2
BLAST of EMLSAG00000000509 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
Pagesback to top
BLAST of EMLSAG00000000509 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000000509 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000509 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000509 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000509 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s107:551831..553780- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000509-683275 ID=EMLSAG00000000509-683275|Name=EMLSAG00000000509|organism=Lepeophtheirus salmonis|type=gene|length=1950bp|location=Sequence derived from alignment at LSalAtl2s107:551831..553780- (Lepeophtheirus salmonis)back to top Add to Basket
|