EMLSAG00000000527, EMLSAG00000000527-683293 (gene) Lepeophtheirus salmonis

Overview


Name	EMLSAG00000000527
Unique Name	EMLSAG00000000527-683293
Type	gene
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: female reproduction, egg string deformation
Gallery Image	Title	Gene or target symbol	Sex/Stage	Phenotype	Date
	Z F198	527	female PreAdult2 Adult	slightly wavy ES-check hatching female reproduction, egg string deformation	27.08.2015 - 13:44 01.10.2015 - 00:00

Homology

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BLAST of EMLSAG00000000527 vs. GO
Match: - (symbol:Sqstm1 "sequestosome 1" species:10090 "Mus musculus" [GO:0000407 "pre-autophagosomal structure" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO] [GO:0001934 "positive regulation of protein phosphorylation" evidence=ISO] [GO:0002376 "immune system process" evidence=IEA] [GO:0003712 "transcription cofactor activity" evidence=TAS] [GO:0005080 "protein kinase C binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005764 "lysosome" evidence=IEA] [GO:0005768 "endosome" evidence=IEA] [GO:0005776 "autophagic vacuole" evidence=ISO] [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0006914 "autophagy" evidence=ISO] [GO:0006915 "apoptotic process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016235 "aggresome" evidence=IDA] [GO:0019901 "protein kinase binding" evidence=ISO] [GO:0030154 "cell differentiation" evidence=IEA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0042169 "SH2 domain binding" evidence=ISO] [GO:0042802 "identical protein binding" evidence=ISO;IDA] [GO:0042803 "protein homodimerization activity" evidence=ISO] [GO:0043122 "regulation of I-kappaB kinase/NF-kappaB signaling" evidence=ISO] [GO:0043130 "ubiquitin binding" evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA] [GO:0051291 "protein heterooligomerization" evidence=ISO] [GO:0070062 "extracellular vesicular exosome" evidence=ISO] [GO:0070530 "K63-linked polyubiquitin binding" evidence=IDA] [GO:2001141 "regulation of RNA biosynthetic process" evidence=TAS] InterPro:IPR000270 InterPro:IPR000433 InterPro:IPR009060 Pfam:PF00564 Pfam:PF00569 PROSITE:PS01357 PROSITE:PS50135 SMART:SM00291 SMART:SM00666 MGI:MGI:107931 GO:GO:0005783 GO:GO:0005634 GO:GO:0051291 GO:GO:0005080 GO:GO:0030154 GO:GO:0006915 GO:GO:0008270 GO:GO:0005776 GO:GO:0031410 GO:GO:0005764 GO:GO:0000932 GO:GO:0005770 GO:GO:0042802 InterPro:IPR015940 SMART:SM00165 SUPFAM:SSF46934 GO:GO:0042169 GO:GO:0003712 GO:GO:0016235 GO:GO:0001934 GO:GO:0016236 GO:GO:0000407 GO:GO:0002376 PROSITE:PS50030 GO:GO:0043122 EMBL:AL627187 UniGene:Mm.40828 GO:GO:0070530 PDB:3ADE PDB:3WDZ PDBsum:3ADE PDBsum:3WDZ PDB:2ZJD PDBsum:2ZJD eggNOG:NOG278569 OrthoDB:EOG74R1RT CTD:8878 HOVERGEN:HBG052750 KO:K14381 OMA:SVCPNYD TreeFam:TF328470 ChiTaRS:SQSTM1 EMBL:U40930 EMBL:U57413 EMBL:AK028898 EMBL:BC006019 PIR:JC4978 RefSeq:NP_035148.1 RefSeq:XP_006532513.1 PDB:2RRU PDB:3B0F PDBsum:2RRU PDBsum:3B0F ProteinModelPortal:Q64337 SMR:Q64337 BioGrid:201982 IntAct:Q64337 MINT:MINT-1728610 STRING:10090.ENSMUSP00000099835 PhosphoSite:Q64337 PaxDb:Q64337 PRIDE:Q64337 Ensembl:ENSMUST00000015981 Ensembl:ENSMUST00000102774 GeneID:18412 KEGG:mmu:18412 UCSC:uc007irw.1 UCSC:uc007irx.1 GeneTree:ENSGT00390000002781 HOGENOM:HOG000154407 InParanoid:Q64337 EvolutionaryTrace:Q64337 NextBio:294036 PRO:PR:Q64337 ArrayExpress:Q64337 Bgee:Q64337 CleanEx:MM_SQSTM1 Genevestigator:Q64337 Uniprot:Q64337)

HSP 1 Score: 44.669 bits (104), Expect = 8.053e-4
Identity = 19/39 (48.72%), Postives = 27/39 (69.23%), Query Frame = 0

Query:  289 KVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDIL 327
            ++ +SL QM +MGFSD+ GWLT+LL  +  DI   LD +
Sbjct:  395 RLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 433

[Close]

BLAST of EMLSAG00000000527 vs. GO
Match: - (symbol:Sqstm1 "Sequestosome-1" species:10116 "Rattus norvegicus" [GO:0000407 "pre-autophagosomal structure" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS] [GO:0002376 "immune system process" evidence=IEA] [GO:0005080 "protein kinase C binding" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005764 "lysosome" evidence=IEA] [GO:0005770 "late endosome" evidence=IEA] [GO:0005776 "autophagic vacuole" evidence=ISS] [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0006914 "autophagy" evidence=ISS] [GO:0006915 "apoptotic process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016235 "aggresome" evidence=IEA] [GO:0016236 "macroautophagy" evidence=ISS] [GO:0030154 "cell differentiation" evidence=IEA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0042169 "SH2 domain binding" evidence=ISS] [GO:0043122 "regulation of I-kappaB kinase/NF-kappaB signaling" evidence=ISS] [GO:0043130 "ubiquitin binding" evidence=ISS] [GO:0070530 "K63-linked polyubiquitin binding" evidence=IEA] InterPro:IPR000270 InterPro:IPR000433 InterPro:IPR009060 Pfam:PF00564 Pfam:PF00569 PROSITE:PS01357 PROSITE:PS50135 SMART:SM00291 SMART:SM00666 RGD:69287 GO:GO:0005783 GO:GO:0005634 GO:GO:0051291 GO:GO:0005080 GO:GO:0042803 GO:GO:0030154 GO:GO:0006915 GO:GO:0008270 GO:GO:0005776 GO:GO:0031410 GO:GO:0005764 GO:GO:0000932 GO:GO:0005770 InterPro:IPR015940 SMART:SM00165 SUPFAM:SSF46934 GO:GO:0042169 GO:GO:0016235 GO:GO:0001934 GO:GO:0016236 GO:GO:0043130 GO:GO:0000407 GO:GO:0002376 PROSITE:PS50030 GO:GO:0043122 PDB:2K6Q PDBsum:2K6Q eggNOG:NOG278569 OrthoDB:EOG74R1RT CTD:8878 HOVERGEN:HBG052750 KO:K14381 OMA:SVCPNYD GeneTree:ENSGT00390000002781 HOGENOM:HOG000154407 EMBL:Y08355 EMBL:AF439403 EMBL:BC061575 RefSeq:NP_787037.2 RefSeq:NP_853528.1 RefSeq:XP_006246275.1 UniGene:Rn.107103 PDB:2KKC PDB:2KTR PDBsum:2KKC PDBsum:2KTR ProteinModelPortal:O08623 SMR:O08623 BioGrid:250206 IntAct:O08623 STRING:10116.ENSRNOP00000056021 PhosphoSite:O08623 PaxDb:O08623 PRIDE:O08623 Ensembl:ENSRNOT00000004308 Ensembl:ENSRNOT00000059255 GeneID:113894 KEGG:rno:113894 UCSC:RGD:69287 EvolutionaryTrace:O08623 NextBio:617968 PRO:PR:O08623 ArrayExpress:O08623 Genevestigator:O08623 Uniprot:O08623)

HSP 1 Score: 44.669 bits (104), Expect = 8.097e-4
Identity = 19/39 (48.72%), Postives = 27/39 (69.23%), Query Frame = 0

Query:  289 KVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDIL 327
            ++ +SL QM +MGFSD+ GWLT+LL  +  DI   LD +
Sbjct:  392 RLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 430

[Close]

BLAST of EMLSAG00000000527 vs. GO
Match: - (symbol:Sqstm1 "sequestosome 1" species:10116 "Rattus norvegicus" [GO:0000407 "pre-autophagosomal structure" evidence=IEA;ISO] [GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO;ISS] [GO:0001934 "positive regulation of protein phosphorylation" evidence=IDA] [GO:0002376 "immune system process" evidence=IEA] [GO:0005080 "protein kinase C binding" evidence=ISO;ISS;IPI] [GO:0005515 "protein binding" evidence=IPI] [GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0005764 "lysosome" evidence=IEA] [GO:0005770 "late endosome" evidence=IEA] [GO:0005776 "autophagic vacuole" evidence=ISO;ISS] [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0006914 "autophagy" evidence=ISO;ISS] [GO:0006915 "apoptotic process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016235 "aggresome" evidence=IEA;ISO] [GO:0016236 "macroautophagy" evidence=ISS] [GO:0019901 "protein kinase binding" evidence=ISO] [GO:0030154 "cell differentiation" evidence=IEA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0042169 "SH2 domain binding" evidence=ISO;ISS] [GO:0042802 "identical protein binding" evidence=ISO] [GO:0042803 "protein homodimerization activity" evidence=IDA] [GO:0043122 "regulation of I-kappaB kinase/NF-kappaB signaling" evidence=ISO;ISS] [GO:0043130 "ubiquitin binding" evidence=ISO;ISS] [GO:0051291 "protein heterooligomerization" evidence=IPI] [GO:0070062 "extracellular vesicular exosome" evidence=ISO] [GO:0070530 "K63-linked polyubiquitin binding" evidence=IEA;ISO] InterPro:IPR000270 InterPro:IPR000433 InterPro:IPR009060 Pfam:PF00564 Pfam:PF00569 PROSITE:PS01357 PROSITE:PS50135 SMART:SM00291 SMART:SM00666 RGD:69287 GO:GO:0005783 GO:GO:0005634 GO:GO:0051291 GO:GO:0005080 GO:GO:0042803 GO:GO:0030154 GO:GO:0006915 GO:GO:0008270 GO:GO:0005776 GO:GO:0031410 GO:GO:0005764 GO:GO:0000932 GO:GO:0005770 InterPro:IPR015940 SMART:SM00165 SUPFAM:SSF46934 GO:GO:0042169 GO:GO:0016235 GO:GO:0001934 GO:GO:0016236 GO:GO:0043130 GO:GO:0000407 GO:GO:0002376 PROSITE:PS50030 GO:GO:0043122 PDB:2K6Q PDBsum:2K6Q eggNOG:NOG278569 OrthoDB:EOG74R1RT CTD:8878 HOVERGEN:HBG052750 KO:K14381 OMA:SVCPNYD GeneTree:ENSGT00390000002781 HOGENOM:HOG000154407 EMBL:Y08355 EMBL:AF439403 EMBL:BC061575 RefSeq:NP_787037.2 RefSeq:NP_853528.1 RefSeq:XP_006246275.1 UniGene:Rn.107103 PDB:2KKC PDB:2KTR PDBsum:2KKC PDBsum:2KTR ProteinModelPortal:O08623 SMR:O08623 BioGrid:250206 IntAct:O08623 STRING:10116.ENSRNOP00000056021 PhosphoSite:O08623 PaxDb:O08623 PRIDE:O08623 Ensembl:ENSRNOT00000004308 Ensembl:ENSRNOT00000059255 GeneID:113894 KEGG:rno:113894 UCSC:RGD:69287 EvolutionaryTrace:O08623 NextBio:617968 PRO:PR:O08623 ArrayExpress:O08623 Genevestigator:O08623 Uniprot:O08623)

HSP 1 Score: 44.669 bits (104), Expect = 8.097e-4
Identity = 19/39 (48.72%), Postives = 27/39 (69.23%), Query Frame = 0

Query:  289 KVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDIL 327
            ++ +SL QM +MGFSD+ GWLT+LL  +  DI   LD +
Sbjct:  392 RLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 430

[Close]

BLAST of EMLSAG00000000527 vs. C. finmarchicus
Match: gi|592848782|gb|GAXK01108762.1| (TSA: Calanus finmarchicus comp297393_c2_seq6 transcribed RNA sequence)

HSP 1 Score: 71.2478 bits (173), Expect = 2.373e-14
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 0

Query:  289 KVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDILTPVNK 332
            +++D+L+ M  MGF+DDDGWLTQLL M+ GDI +VLDILTPV K
Sbjct:  146 RIADALDNMVGMGFTDDDGWLTQLLVMKHGDISQVLDILTPVKK 277

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BLAST of EMLSAG00000000527 vs. C. finmarchicus
Match: gi|592858806|gb|GAXK01098756.1| (TSA: Calanus finmarchicus comp276039_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 65.4698 bits (158), Expect = 3.115e-12
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 0

Query:  268 LNESSVYSLKYNQSPYLTTTQKVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDILTPVNK 332
            LN+S     +    P      +++++L+QM AMGFSD+DGWLT+LL  + GDI +VLDIL+PV+K
Sbjct:   89 LNQSCSKQPRITPVPKRHYNPRIANALDQMIAMGFSDNDGWLTELLVRKHGDILQVLDILSPVSK 283

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BLAST of EMLSAG00000000527 vs. C. finmarchicus
Match: gi|592858808|gb|GAXK01098754.1| (TSA: Calanus finmarchicus comp276039_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 66.2402 bits (160), Expect = 3.569e-11
Identity = 27/44 (61.36%), Postives = 39/44 (88.64%), Query Frame = 0

Query:  289 KVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDILTPVNK 332
            +++++L+QM AMGFSD+DGWLT+LL  + GDI +VLDIL+PV+K
Sbjct:   89 RIANALDQMIAMGFSDNDGWLTELLVRKHGDILQVLDILSPVSK 220

[Close]

BLAST of EMLSAG00000000527 vs. C. finmarchicus
Match: gi|592848783|gb|GAXK01108761.1| (TSA: Calanus finmarchicus comp297393_c2_seq5 transcribed RNA sequence)

HSP 1 Score: 55.8398 bits (133), Expect = 7.713e-9
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 0

Query:  289 KVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKV 323
            +++D+L+ M  MGF+DDDGWLTQLL M+ GDI +V
Sbjct:  199 RIADALDNMVGMGFTDDDGWLTQLLVMKHGDISQV 303

[Close]

BLAST of EMLSAG00000000527 vs. C. finmarchicus
Match: gi|592785037|gb|GAXK01169531.1| (TSA: Calanus finmarchicus comp627_c1_seq7 transcribed RNA sequence)

HSP 1 Score: 56.225 bits (134), Expect = 4.877e-8
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0

Query:  289 KVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDILTPVNK 332
            K+  +L+ M  MGFS++ GW+T LL  + GDI KVLDIL PV K
Sbjct:  674 KIQVALQAMMNMGFSNEGGWMTSLLEAKNGDIGKVLDILQPVRK 805

[Close]

BLAST of EMLSAG00000000527 vs. C. finmarchicus
Match: gi|592785039|gb|GAXK01169529.1| (TSA: Calanus finmarchicus comp627_c1_seq5 transcribed RNA sequence)

HSP 1 Score: 56.225 bits (134), Expect = 5.202e-8
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0

Query:  289 KVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDILTPVNK 332
            K+  +L+ M  MGFS++ GW+T LL  + GDI KVLDIL PV K
Sbjct:  876 KIQVALQAMMNMGFSNEGGWMTSLLEAKNGDIGKVLDILQPVRK 1007

[Close]

BLAST of EMLSAG00000000527 vs. C. finmarchicus
Match: gi|592785038|gb|GAXK01169530.1| (TSA: Calanus finmarchicus comp627_c1_seq6 transcribed RNA sequence)

HSP 1 Score: 56.225 bits (134), Expect = 5.743e-8
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0

Query:  289 KVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDILTPVNK 332
            K+  +L+ M  MGFS++ GW+T LL  + GDI KVLDIL PV K
Sbjct:  852 KIQVALQAMMNMGFSNEGGWMTSLLEAKNGDIGKVLDILQPVRK 983

[Close]

BLAST of EMLSAG00000000527 vs. C. finmarchicus
Match: gi|592785043|gb|GAXK01169525.1| (TSA: Calanus finmarchicus comp627_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 56.225 bits (134), Expect = 7.066e-8
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0

Query:  289 KVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDILTPVNK 332
            K+  +L+ M  MGFS++ GW+T LL  + GDI KVLDIL PV K
Sbjct: 1634 KIQVALQAMMNMGFSNEGGWMTSLLEAKNGDIGKVLDILQPVRK 1765

[Close]

BLAST of EMLSAG00000000527 vs. C. finmarchicus
Match: gi|592785042|gb|GAXK01169526.1| (TSA: Calanus finmarchicus comp627_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 56.225 bits (134), Expect = 7.886e-8
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0

Query:  289 KVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDILTPVNK 332
            K+  +L+ M  MGFS++ GW+T LL  + GDI KVLDIL PV K
Sbjct: 1610 KIQVALQAMMNMGFSNEGGWMTSLLEAKNGDIGKVLDILQPVRK 1741

[Close]

BLAST of EMLSAG00000000527 vs. C. finmarchicus
Match: gi|592785049|gb|GAXK01169519.1| (TSA: Calanus finmarchicus comp627_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 55.8398 bits (133), Expect = 8.471e-8
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0

Query:  289 KVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDILTPVNK 332
            K+  +L+ M  MGFS++ GW+T LL  + GDI KVLDIL PV K
Sbjct:   28 KIQVALQAMMNMGFSNEGGWMTSLLEAKNGDIGKVLDILQPVRK 159

[Close]

BLAST of EMLSAG00000000527 vs. L. salmonis peptides
Match: EMLSAP00000000527 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1081:72973:76122:1 gene:EMLSAG00000000527 transcript:EMLSAT00000000527 description:"snap_masked-LSalAtl2s1081-processed-gene-0.28")

HSP 1 Score: 667.537 bits (1721), Expect = 0.000e+0
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0

Query:    1 MNQTQSMISLHPLSSPPPQSSSTLLPQLGTIPSSLSPESLSKTHEEFDLIDSTSAPLTVKQLSLSEESLNSEPKAKSLSPAKEQEAFNPSETPYRGVLQAPVTVLLKDEFQVHEAREANSEEIVGSLRGLRKEIDKLLIDEEDRKSTPESSSSKCTLAKMDSSGNDSTCPYDLIKVLSFEESGEEFPSDKLELKPCSEEDSEPRETPALDNGNVIDQEDKDKPNHGKPESSSYSMIPLEEETQKVLHKPTKTSYDYVPAYCPRTRNLLNESSVYSLKYNQSPYLTTTQKVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDILTPVNK 332
            MNQTQSMISLHPLSSPPPQSSSTLLPQLGTIPSSLSPESLSKTHEEFDLIDSTSAPLTVKQLSLSEESLNSEPKAKSLSPAKEQEAFNPSETPYRGVLQAPVTVLLKDEFQVHEAREANSEEIVGSLRGLRKEIDKLLIDEEDRKSTPESSSSKCTLAKMDSSGNDSTCPYDLIKVLSFEESGEEFPSDKLELKPCSEEDSEPRETPALDNGNVIDQEDKDKPNHGKPESSSYSMIPLEEETQKVLHKPTKTSYDYVPAYCPRTRNLLNESSVYSLKYNQSPYLTTTQKVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDILTPVNK
Sbjct:    1 MNQTQSMISLHPLSSPPPQSSSTLLPQLGTIPSSLSPESLSKTHEEFDLIDSTSAPLTVKQLSLSEESLNSEPKAKSLSPAKEQEAFNPSETPYRGVLQAPVTVLLKDEFQVHEAREANSEEIVGSLRGLRKEIDKLLIDEEDRKSTPESSSSKCTLAKMDSSGNDSTCPYDLIKVLSFEESGEEFPSDKLELKPCSEEDSEPRETPALDNGNVIDQEDKDKPNHGKPESSSYSMIPLEEETQKVLHKPTKTSYDYVPAYCPRTRNLLNESSVYSLKYNQSPYLTTTQKVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDILTPVNK 332

[Close]

BLAST of EMLSAG00000000527 vs. Select Arthropod Genomes
Match: EEB15519.1 (Sequestosome-1, putative [Pediculus humanus corporis])

HSP 1 Score: 52.7582 bits (125), Expect = 8.490e-7
Identity = 21/45 (46.67%), Postives = 31/45 (68.89%), Query Frame = 0

Query:  285 TTTQKVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDILTP 329
            T++  + + LE+M  MGF ++ GWLT LL  + GDID+VL +L P
Sbjct:  394 TSSSHIEEMLEKMLEMGFDNEGGWLTHLLKAKNGDIDQVLKVLAP 438

[Close]

BLAST of EMLSAG00000000527 vs. nr
Match: gi|919012273|ref|XP_013390593.1| (PREDICTED: sequestosome-1-like [Lingula anatina])

HSP 1 Score: 63.1586 bits (152), Expect = 1.713e-7
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 0

Query:  289 KVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDILTPVN 331
            KV+D+L QMK MGFSDD GWLT LL  + GDI KVLD L P N
Sbjct:  440 KVADALVQMKQMGFSDDGGWLTHLLESKNGDIGKVLDALKPQN 482

[Close]

BLAST of EMLSAG00000000527 vs. nr
Match: gi|919032935|ref|XP_013400141.1| (PREDICTED: sequestosome-1-like [Lingula anatina])

HSP 1 Score: 61.2326 bits (147), Expect = 8.859e-7
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 0

Query:  289 KVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDILTPVN 331
            KV+D+L +MK MGFSD+DGWLT+LL  + GDI KVLD L P N
Sbjct:  440 KVADALVKMKQMGFSDEDGWLTRLLESKNGDIVKVLDALKPQN 482

[Close]

BLAST of EMLSAG00000000527 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold988_size73003-snap-gene-0.15 (protein:Tk02479 transcript:maker-scaffold988_size73003-snap-gene-0.15-mRNA-1 annotation:"sequestosome-1 isoform x1")

HSP 1 Score: 80.4925 bits (197), Expect = 7.686e-17
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 0

Query:  282 PYLTTTQKVSDSLEQMKAMGFSDDDGWLTQLLTMERGDIDKVLDILTPVNK 332
            P  T + KVSD+ +QM +MGFSDDDGWLTQLLTM+RG+ID+VLDIL PV K
Sbjct:  593 PGTTVSSKVSDARDQMLSMGFSDDDGWLTQLLTMKRGNIDEVLDILAPVAK 643

The following BLAST results are available for this feature:

BLAST of EMLSAG00000000527 vs. GO
BLAST of EMLSAG00000000527 vs. C. finmarchicus
BLAST of EMLSAG00000000527 vs. L. salmonis peptides
BLAST of EMLSAG00000000527 vs. SwissProt
BLAST of EMLSAG00000000527 vs. Select Arthropod Genomes
BLAST of EMLSAG00000000527 vs. nr
BLAST of EMLSAG00000000527 vs. Tigriopus kingsejongenis genes

BLAST of EMLSAG00000000527 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 3


Match Name	E-value	Identity	Description
-	8.053e-4	48.72	symbol:Sqstm1 "sequestosome 1" species:10090 "Mus ...	[more]
-	8.097e-4	48.72	symbol:Sqstm1 "Sequestosome-1" species:10116 "Ratt...	[more]
-	8.097e-4	48.72	symbol:Sqstm1 "sequestosome 1" species:10116 "Ratt...	[more]

BLAST of EMLSAG00000000527 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|592848782\|gb\|GAXK01108762.1\|	2.373e-14	65.91	TSA: Calanus finmarchicus comp297393_c2_seq6 trans...	[more]
gi\|592858806\|gb\|GAXK01098756.1\|	3.115e-12	47.69	TSA: Calanus finmarchicus comp276039_c0_seq3 trans...	[more]
gi\|592858808\|gb\|GAXK01098754.1\|	3.569e-11	61.36	TSA: Calanus finmarchicus comp276039_c0_seq1 trans...	[more]
gi\|592848783\|gb\|GAXK01108761.1\|	7.713e-9	60.00	TSA: Calanus finmarchicus comp297393_c2_seq5 trans...	[more]
gi\|592785037\|gb\|GAXK01169531.1\|	4.877e-8	54.55	TSA: Calanus finmarchicus comp627_c1_seq7 transcri...	[more]
gi\|592785039\|gb\|GAXK01169529.1\|	5.202e-8	54.55	TSA: Calanus finmarchicus comp627_c1_seq5 transcri...	[more]
gi\|592785038\|gb\|GAXK01169530.1\|	5.743e-8	54.55	TSA: Calanus finmarchicus comp627_c1_seq6 transcri...	[more]
gi\|592785043\|gb\|GAXK01169525.1\|	7.066e-8	54.55	TSA: Calanus finmarchicus comp627_c1_seq1 transcri...	[more]
gi\|592785042\|gb\|GAXK01169526.1\|	7.886e-8	54.55	TSA: Calanus finmarchicus comp627_c1_seq2 transcri...	[more]
gi\|592785049\|gb\|GAXK01169519.1\|	8.471e-8	54.55	TSA: Calanus finmarchicus comp627_c0_seq7 transcri...	[more]

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BLAST of EMLSAG00000000527 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1


Match Name	E-value	Identity	Description
EMLSAP00000000527	0.000e+0	100.00	pep:novel supercontig:LSalAtl2s:LSalAtl2s1081:7297...	[more]

BLAST of EMLSAG00000000527 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000000527 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 1


Match Name	E-value	Identity	Description
EEB15519.1	8.490e-7	46.67	Sequestosome-1, putative [Pediculus humanus corpor...	[more]

BLAST of EMLSAG00000000527 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 2


Match Name	E-value	Identity	Description
gi\|919012273\|ref\|XP_013390593.1\|	1.713e-7	67.44	PREDICTED: sequestosome-1-like [Lingula anatina]	[more]
gi\|919032935\|ref\|XP_013400141.1\|	8.859e-7	65.12	PREDICTED: sequestosome-1-like [Lingula anatina]	[more]

BLAST of EMLSAG00000000527 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1


Match Name	E-value	Identity	Description
maker-scaffold988_size73003-snap-gene-0.15	7.686e-17	70.59	protein:Tk02479 transcript:maker-scaffold988_size7...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s1081	supercontig	LSalAtl2s1081:72973..76122 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016
Blast vs. GO	2014-04-02
TblastN vs C. finmarchicus TSA	2014-05-09
Blastp vs. self	2014-05-10
Blastp vs. SwissProt	2017-02-10
Blastp vs. Selected Arthropods	2017-02-20
Blastp vs. NR (2/2017)	2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins	2018-04-18

Properties


Property Name	Value
Logic name	ensemblgenomes
Description	snap_masked-LSalAtl2s1081-processed-gene-0.28
Biotype	protein_coding
Evidence	IEA
Note	Hypothetical protein

Cross References

External references for this gene


Database	Accession
Ensembl Metazoa (gene)	EMLSAG00000000527 (primary cross-reference)

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
EMLSAT00000000527	EMLSAT00000000527-696374	Lepeophtheirus salmonis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at LSalAtl2s1081:72973..76122+

gene from alignment at LSalAtl2s1081:72973..76122+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAG00000000527-683293 ID=EMLSAG00000000527-683293|Name=EMLSAG00000000527|organism=Lepeophtheirus salmonis|type=gene|length=3150bp|location=Sequence derived from alignment at LSalAtl2s1081:72973..76122+ (Lepeophtheirus salmonis)
ATAAATTTTACTTTACAGTTCATCGTATTCATTGAGAGGTTTTTTTGTTT
TTGTTCAATAAAAAGAGTGCTTTGTAAAGAAAAGGGTGTGGCATTAAGAA
CATGCAGGCCTCAGGCCCCAAAGCTCTGGTTATTAAACTTATTTTTGAAT
ACCAAGGAGAGCGTTCTAATAGTCCAAAAATAAGAAAGCTTGTGCTAGAA
GAAGGAGAGACGCCGACTCTGGGCTTCTTATGTGAATCTTTTTCTTTAAA
AAGCTCGCAAACATTTTATTACTACGATGATGACGGGGATCAAATAACTA
TATCCAATGATCGAGAGCTTCTGACAGCCATCAAGGAAAAGGTAATATTT
CTACCTAGAAAGGTCCTTAATCGTTTTTTATAACCTCTATACTTTAATTT
AGAAGTCCTCTGATACACTAAGGCTCTATACAGGAACAGAGCTTATTCCA
GGAGATATTCCGAGTAAAAGGAACCATGAGAAAGATATTTTTGAAGAGAT
TTGTACCAATTGTCAGAACCGAATCGGTCGATTCTCTTATAAATGTGTTA
TTTGTAGCGGTGTGGATTTATGTGGTCGGTATGATAAATAATAAATTAAT
CCCTTAACTACAGCAATATCCCGAGCAGTACGGATATTTAATTCCGCATA
CATAGATACGAGTGCGGTCTGAAAAGTTTCCGACCTCAACCTAAAGATTG
CAGTAAATAAAAGTGTTCGTTTGAGGCAGTGATGGTCCCATCTCTCTAAC
CCGTCCTGTCTGTAACTTTGCTGGGAGAAGTGTGTAGAGTAACAAGGAGA
CTATGTTAAAAAATACGAATTTTGTCCACAAAACCACTCACATCAACTCA
ATCAAACGATTGTTATATAACAACACCGCGTCCAAAATGTCCGAAACTTT
GGTGAGTAACTGTCTACAGATTTTAGACAGATGGCACTAGCTTTTATATA
CGAGTGCTGCCATCTTCATGTTGAGGTTGGAAACTTTTNNNNNNNNNNNT
TTCGTGCTTTATTAAATGCACCATCTAATGAAAGGCAAAAGGATGAGGAT
AATGCAATTTTTTTTTGTCTTAAAATGCCAGGAATATTCGATTATTTCTT
ATATACTATGGCTATTTGCGGATTAAACCGGGTATTTCTATGTATACAAA
ATTATTTTCTCAGATGACGACATCACATATATANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAACTATGAGCTATCTTTTTTNGCTGCCATCTTCATGTTGAGGT
TGGAAACTTTTCAGATATTCTTTTTCGTGCTTTATTAAATGCACCATCTA
ATGAAAGGCAAAAGGATGAGGATAATGCAATTTTTTTTTGTCTTAAAATG
CCAGGAATATTCGATTATTTCTTATATACTATGGCTATTTGCGGATTAAA
CCGGGTATTTCTATGTATACAAAATTATTTTCTCAGATGACGACATCACA
TATATAACCTGTTACTAATGTGACAAAATTCTAATGACGACGACGACGTC
ATAATATGAATATGTTAATATTAGTTCTATTGCAGGTGTGAAGCCTTCGG
AGTGCACTCGACTCATGATATAATACGATTATCAAATGAGAAGACGTATC
CATCCCAGTTCTTCATGCGGTTGCATAGGTGTGTAAGGTGTTATCGTCTT
AGTAATTATTTGTATTACTTTTATGTGAATGTACGTACACGTTGAATCAA
GTCTTGATGACATAATCAAAGCTCCATAGCTACATGTACAATGTTATAAA
TTTAAAATGAAAAAAATTAGCCTTAATAGTGCGTAAAAATAACTTTGTTC
AAGTTTTTGAGTTGACGTAGTTTAAATTCCTTTGATTCAAGTCGAAAAAA
CAATAAGTATTAGAGAGTATAATGCATTTTATTGAAATAAATAATATATT
TGCTTCTCCTGACTACAGATTATATGATAAAATGAATCAAACACAGTCCA
TGATTTCTCTCCATCCTCTTTCCTCKCCKCCGCCACAGTCATCATCTACA
CTTCTACCACAACTTGGAACCATTCCTTCCTCCTTATCACCAGAGTCCTT
ATCAAAAACTCACGAAGAATTTGATTTAATTGATTCCACTTCCGCTCCTC
TAACCGTCAAACAACTTTCCCTCTCTGAGGAATCCTTGAACTCTGAGCCC
AAAGCAAAATCTTTATCCCCAGCAAAAGAACAAGAGGCATTTAATCCCTC
TGAGACTCCATATCGAGGTGTACTTCAAGCTCCAGTGACGGTATTATTGA
AGGATGAGTTTCAAGTGCACGAGGCAAGAGAAGCAAACTCGGAGGAAATC
GTTGGATCACTTCGGGGATTGCGTAAAGAAATTGATAAATTACTCATTGA
TGAGGAGGATAGAAAGTCTACTCCGGAGTCGAGCTCTTCTAAATGCACAC
TTGCGAAAATGGATTCTTCAGGAAACGATTCCACTTGTCCATATGATTTA
ATTAAAGTTCTTAGTTTTGAAGAGTCAGGCGAGGAGTTTCCATCGGATAA
ATTAGAATTAAAGCCTTGTTCCGAAGAAGATTCTGAGCCGAGAGAAACTC
CTGCTTTAGATAATGGTAATGTTATTGATCAAGAAGACAAAGACAAACCC
AATCATGGGAAACCCGAATCCTCCTCCTATTCCATGATTCCCCTTGAAGA
AGAAACACAAAAGGTTTTGCACAAACCAACGAAAACATCATATGATTATG
TACCTGCTTACTGCCCACGAACTCGAAATTTACTCAACGAGTCGAGTGTT
TATTCACTCAAATACAATCAAAGTCCCTATTTGACAACAACACAAAAGGT
ATCGGACTCTTTGGAACAAATGAAGGCGATGGGATTTTCTGACGACGATG
GTTGGTTGACTCAACTACTCACAATGGAGCGGGGAGATATTGATAAAGTA
TTAGACATTTTAACTCCTGTCAATAAGTGATTAATCATTATGTACAAACA
TAAAAAAAGAGTGATTAGCGATGAGTCATTCACAACTATTAACTTATTAA
TTTATAAAACTATTTAATTTGAAAAATATAATGTATTTTGAATACAGCTG

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