EMLSAG00000000543, EMLSAG00000000543-683309 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000543
Unique NameEMLSAG00000000543-683309
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000543 vs. C. finmarchicus
Match: gi|592885522|gb|GAXK01072853.1| (TSA: Calanus finmarchicus comp431532_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 1.806e+0
Identity = 9/20 (45.00%), Postives = 15/20 (75.00%), Query Frame = 0 
Query:   50 HCSCIVYFILPLVVYLEKKP 69
            HCSCI+  +LP ++Y ++ P
Sbjct:  887 HCSCILVTMLPTLLYNQRHP 946
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BLAST of EMLSAG00000000543 vs. C. finmarchicus
Match: gi|592885513|gb|GAXK01072862.1| (TSA: Calanus finmarchicus comp431532_c1_seq10 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.084e+0
Identity = 9/20 (45.00%), Postives = 15/20 (75.00%), Query Frame = 0 
Query:   50 HCSCIVYFILPLVVYLEKKP 69
            HCSCI+  +LP ++Y ++ P
Sbjct:  544 HCSCILVTMLPTLLYNQRHP 603
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BLAST of EMLSAG00000000543 vs. C. finmarchicus
Match: gi|592885519|gb|GAXK01072856.1| (TSA: Calanus finmarchicus comp431532_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.225e+0
Identity = 9/20 (45.00%), Postives = 15/20 (75.00%), Query Frame = 0 
Query:   50 HCSCIVYFILPLVVYLEKKP 69
            HCSCI+  +LP ++Y ++ P
Sbjct:  887 HCSCILVTMLPTLLYNQRHP 946
[Close]
BLAST of EMLSAG00000000543 vs. C. finmarchicus
Match: gi|592889187|gb|GAXK01069188.1| (TSA: Calanus finmarchicus comp972762_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.882e+0
Identity = 15/50 (30.00%), Postives = 20/50 (40.00%), Query Frame = 0 
Query:    4 CNDNPGKKKLFNVMYLMVHAVCNKWEIMDVSSYSIMGHKFICSSGVHCSC 53
            C  +PG  +   VM   V  VCN W +   +S +      I  S   C C
Sbjct:  229 CRPSPGTDRSGQVMGYEVSGVCNDWSLACQASVTACAVSCIAHSSYRCWC 378
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BLAST of EMLSAG00000000543 vs. C. finmarchicus
Match: gi|592798956|gb|GAXK01155612.1| (TSA: Calanus finmarchicus comp105552_c9_seq2 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.078e+0
Identity = 14/42 (33.33%), Postives = 23/42 (54.76%), Query Frame = 0 
Query:   11 KKLFNVMYLMVHAVCNKWEIMDVSSYSIMGHKFICSSGVHCS 52
            +KL    + M H        +D+SS+SI+  K IC++  +CS
Sbjct: 4552 QKLLVNHWSMEHGDVRTLLYLDISSFSILNVKVICNNVGYCS 4677
[Close]
BLAST of EMLSAG00000000543 vs. C. finmarchicus
Match: gi|592798957|gb|GAXK01155611.1| (TSA: Calanus finmarchicus comp105552_c9_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.079e+0
Identity = 14/42 (33.33%), Postives = 23/42 (54.76%), Query Frame = 0 
Query:   11 KKLFNVMYLMVHAVCNKWEIMDVSSYSIMGHKFICSSGVHCS 52
            +KL    + M H        +D+SS+SI+  K IC++  +CS
Sbjct: 4552 QKLLVNHWSMEHGDVRTLLYLDISSFSILNVKVICNNVGYCS 4677
[Close]
BLAST of EMLSAG00000000543 vs. C. finmarchicus
Match: gi|592801758|gb|GAXK01152810.1| (TSA: Calanus finmarchicus comp403419_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 9.338e+0
Identity = 10/38 (26.32%), Postives = 19/38 (50.00%), Query Frame = 0 
Query:    8 PGKKKLFNVMYLMVHAVCNKWEIMDVSSYSIMGHKFIC 45
            PGK     ++ + +H + N W ++D  ++    H F C
Sbjct:  742 PGKDSQ*RLLVMNMHCMRNCWSMVDYVTWKFFSHTFCC 855
[Close]
BLAST of EMLSAG00000000543 vs. L. salmonis peptides
Match: EMLSAP00000000543 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1089:95639:99073:1 gene:EMLSAG00000000543 transcript:EMLSAT00000000543 description:"snap_masked-LSalAtl2s1089-processed-gene-0.3")

HSP 1 Score: 142.895 bits (359), Expect = 6.700e-46
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 
Query:    1 MADCNDNPGKKKLFNVMYLMVHAVCNKWEIMDVSSYSIMGHKFICSSGVHCSCIVYFILPLVVYLEKKP 69
            MADCNDNPGKKKLFNVMYLMVHAVCNKWEIMDVSSYSIMGHKFICSSGVHCSCIVYFILPLVVYLEKKP
Sbjct:    1 MADCNDNPGKKKLFNVMYLMVHAVCNKWEIMDVSSYSIMGHKFICSSGVHCSCIVYFILPLVVYLEKKP 69
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000543 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000543 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 17
Match NameE-valueIdentityDescription
gi|592885522|gb|GAXK01072853.1|1.806e+045.00TSA: Calanus finmarchicus comp431532_c1_seq1 trans... [more]
gi|592885513|gb|GAXK01072862.1|2.084e+045.00TSA: Calanus finmarchicus comp431532_c1_seq10 tran... [more]
gi|592885519|gb|GAXK01072856.1|2.225e+045.00TSA: Calanus finmarchicus comp431532_c1_seq4 trans... [more]
gi|592889187|gb|GAXK01069188.1|4.882e+030.00TSA: Calanus finmarchicus comp972762_c0_seq1 trans... [more]
gi|592798956|gb|GAXK01155612.1|7.078e+033.33TSA: Calanus finmarchicus comp105552_c9_seq2 trans... [more]
gi|592798957|gb|GAXK01155611.1|7.079e+033.33TSA: Calanus finmarchicus comp105552_c9_seq1 trans... [more]
gi|592801758|gb|GAXK01152810.1|9.338e+026.32TSA: Calanus finmarchicus comp403419_c3_seq1 trans... [more]

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BLAST of EMLSAG00000000543 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000005436.700e-46100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1089:9563... [more]
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BLAST of EMLSAG00000000543 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000543 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000543 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000543 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1089supercontigLSalAtl2s1089:95639..99073 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1089-processed-gene-0.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000543 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000543EMLSAT00000000543-696390Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1089:95639..99073+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000543-683309 ID=EMLSAG00000000543-683309|Name=EMLSAG00000000543|organism=Lepeophtheirus salmonis|type=gene|length=3435bp|location=Sequence derived from alignment at LSalAtl2s1089:95639..99073+ (Lepeophtheirus salmonis)
ATGGCAGACTGCAATGATAATCCAGGTAAAAACATTGACGAAAAAAATTC
GTCTCAGAAAATGAACCATCGTCATCATCTTTCTTGATTGAAACGCCTGA
GGTGGAGTTTTTTTGTTTTTTGTTTGTTTTTTCAATAATTATAATGCAGA
GGATTGCTATGATTTATATTATTGTTGACAGTGCTCCAAAAAAATAAAGA
CAACATACGGTATGACTAGTAAATGACTCCTAATCGATCTAATTTCATCA
TATACATTCTATGTATCAAGCAAGTAACATTTTTATAAATAAAATCTCCA
TTTTCCGGCCGTAATCTTCATCTATCTGACAACCTTGAATAGCTAGAGGG
GAGAAAAAATAAAATAAAAAGTAATAAATAGGGGTGATATTTAATTGTTA
TTCCCATTATGAGTCAAAAATAAAATAACAAACCAATTATATTTGATTAT
TTAATACGTTAGAAAAAATATGAAGTCATTTCCCCATTTCCTTTATTTAT
TTTTTCATTAACATAAGTATATTTATTTATNAGAGTGTATTGTTAAATTG
TACAAACAGCAAGTTATTTGTTCATTTATATAATTTGCTCCAACAGCTCT
TGCGTAATATACATAAGATATGAGCGGTCAACTCACTCAAATAATAACTA
CAAGCTGTGTCTTTATTATATGTTCTGCAATTTCTTGTTTTTTCACGTTC
TCTCTCTAGCTTTTCAAACATGCATTATATGATAAAACAAATCGAATATC
TGTTAATCAAGCAAATAATAATTGATCTATTGAGAGTTATGTATCAAGGA
AAAAAATACTGGTTTGATCTAGAATCTGTAATTTACAACAATCATATGTA
GTTTGATGATGTAAAAGGAAAGACGCTTTTGATGAAAACCCCTTTAGTAG
ATAATATTAGCACAAAAAAATATGTATACAATTTCAATAGAAGGTTGAGT
GAGGGCTAAAGAATGTACATTAACAAAGAATTAATTTATTTAATGGTTAT
TAATAATATCTAATTTATTGTGCATTGAAGCGGAGTTGATCTTAGATGAT
GGTTTATTTCTTATTTTAATCTGAAAGGGTTAAAGTAATCTATCAATGGA
TGGACAAAAGGAATGCTTCAATAAATAATTCCATTCTTATATTCTCTCAA
ATATTTTTATAATAGAATATTAATTTTGTATATTTATTTATATTGTTTGA
CCGATGATGGCGAACGTTTCCCATCAAAAAGTGGTCTATTTTTGAGAGGT
GGAAAATGGATATCAGCTAACTATTATTTGGTTACCTGTAATAATATTAT
AATATGCATTAATTTTTGATTGGTAGTAACATGATTATGTAATCATTATT
TACTTTTTCTTTTTAGGTAAGAAGAAACTATTTAATGTTATGTATCTAAT
GGTCCACGCTGTTTGCAATAAGTGGGAAATAATGGACGTTTCATCCTACT
CAATCATGGGTCATAAATTTATATGTAGTTCAGGAGTGCATTGTAGTTGC
ATTGTATATTTTATCCTACCTCTTGTGGTGTATTTAGAAAAAAAACCATA
GTCTTATGTGCAATGCTTCCGCACTGCAAGTCCTTGGCTCCATAAACTGC
ATCACTACCTTCGATTTCTGTCCGGACAGAACATACTTTTTATATTATGA
ATACTAGATTGCGAGTTTTGTTGAGATGAATGGCCAAATGGCCGCAATTT
CGATCTGTTTCATACCTTTAGATCGAGTTGATTCATAGTCTACGTGAATA
TTTTTTCCCAACGCAAGATGTCGCTTTTTATAATACCATGATTCATGAAT
GATTAAAAAGTAACCTTTTCCCCCTTTCCAAAATTCACCTAGATAATTAA
AAAGGGGGATCCCTGGAGATTACATAGTTAGTTATAAGTAAAGGACTCTA
GGCAAAGAGTAGACTCTCAAGGCAGGGAAGGTAGGATTTAGAAGTTCTCA
ATTCTGATTGAGTTATAATTAGAAACTGCTACATGTTCCTCCAGCTAGGC
ACACAGGSGAGGGGGGGGGGGTGAGTGAAGGAGKGAGCCCTCCCCTGAAA
AGAGAAAAATTAGGGCCAACTACGTTAGGAACATAGTGTTCCTTGTCCTT
CGATTGAATTGCTCATTTTTCCCTTGAGCGCTCATTCCCTCGAGTCCTTT
AATTATAAGTTAATATTCAAATATACTCAACGCTCCGTAGTGGACAAATT
AGTAATTGGGTAAACAAGTATATTTGGATAAATATTGATGACGTTGTCCT
CGTTTTGCCATTTGCTTTATTTTTTCTGTTTGATGTACACAACTGACCAC
TCAGATGCATTCTATCCAATTAATTTGCAAAAGCTTGCAGGATCTCAAAT
TACTCAGTCACTGTTGAATAAGTATAAGAAATATCGGTACTACTGAAATG
AGGGGAAACAACTTCTTCAAATAAGTTAATTCCCCATTTTTTTAGGACTT
TTTTTTAACATACCTAGTAGAACTTTGATACTTTGCATTAATCGTTAAAT
TTTTATTGAAACACTAGTGTCGCACATCAGCTGACAAGACGTTCACGGAC
GTTAACAGTTCTTATTTCATTGGTTATTGAGAACAAGTTATAAAAAAAGC
CCCACCAAACTGTAAAAATGTCATAACATTTATAGTTACGAGTGTTTTGT
CAATGATGATAACTACTATCAAGATGTGCACATTTTTCCCAATTTGGTGT
TGCTTTCATTTGTAACGTGAGTGAAAACACTCTTATTGATATATCACATC
ATTACCTGCTTTATTGTATTTATCAACTTTTCTTCGAAAAAGAAATAGAA
AAAAGGCCCAAAATCAATTCTTAGCATCTAGTCACTATCAAAGTTAATAG
AAATAGAAGGATATACCATTACGCGTTTACGACTGATGTTTGACTTCCGC
CACGCTTTTAATATTGACGTCATGATAAATGAGTGGTTGTGTGTTTTGTC
AAAATCTGCCTGTCTTGCCCAGCAGTCGATGCAATACATCAGATTGAAAA
TTCTAACAAGGAAGATTACATGATGGTCTAACCTTGTATTTCTATTAACC
TTGAGTATTATGAAGTTATTATTCAATAACTTTTTGAAATGTTTCACAGC
CTGACACTACTGATAAGGGGGAAGGAAGCAGACCATTGACAGCTGACAAT
AAAATACATTGTATATTTGTTTATTAGTGAGGTAGTACTTTGATACAGAA
CCATAGAGAAAGATAGAAAGACTAGGTGAGATAAAGGGATCAGTAAAACG
TTTTTCACAGTCATTTGTCAACATATATATTCTATGTATATAACGCATCA
AAGTACTAAGTACCAACTGTTCTTTTTTCGTTATTATCTTAAGGCAACTC
AACTATGTAGTTCTCAACATTCTCGCAACCCTAATATTATATCTTATTCC
TTTATATATTACATACTTTGTTTATTTGAAATACA
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