EMLSAG00000000553, EMLSAG00000000553-683319 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592835294|gb|GAXK01122250.1| (TSA: Calanus finmarchicus comp106713_c0_seq1 transcribed RNA sequence) HSP 1 Score: 142.51 bits (358), Expect = 1.111e-37 Identity = 80/222 (36.04%), Postives = 123/222 (55.41%), Query Frame = 0 Query: 30 NISIYTPCLDDEECNK------EGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPV-----GEKGEKGECYRHHSRRRXTSGICLDD--VAECYSHDECGS-RKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGAL-AFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQIS---RMGVLKESICKGQEYDFMEMLPSCGNF 233 +I + C+ D++C+ E + CFQY CYPW+ KA + F C+R DC G G G+C+RH RR SGICL D + C+ H +C + RKC N C + YF AL+ C + C+D+LLG+ CC +I G L A+++ P+W CCDN +P+ Q P DIS++ ++K++ +I+ + + ICKG +Y+ M L +C + Sbjct: 583 DIVKFPVCVTDDDCDNISDKKHESYKCFQYMCYPWNNKAQG---QPFRTCKRRSDCKALSSAEGGDGGNGDCFRHQDRRNVFSGICLSDSDMKPCFEHTDCAAGRKCTNQFCGEEQYFTALEELSCKKDSFCQDMLLGDHCCFDIRGGLSAWDSGEPDWGMKCCDNK-AAPVKQPPDDISNDQIKKLNQKITVHFKKFEIDNLICKGLKYEMMLKLSACDEY 1236
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592921548|gb|GAXK01036827.1| (TSA: Calanus finmarchicus comp406413_c3_seq1 transcribed RNA sequence) HSP 1 Score: 131.724 bits (330), Expect = 4.580e-34 Identity = 74/211 (35.07%), Postives = 118/211 (55.92%), Query Frame = 0 Query: 30 NISIYTPCLDDEECNKEGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCP---VGEKGE--KGECYRHHSRRRXTSGICLDDV--AECYSHDECGSR-KCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMG--VLKESICKGQEYDFMEMLPSC 230 NIS+Y C D +C + G +CFQY CYPW+ + F C + DC V E+G+ G C+RH R GICL + +C++H +C S +C NG C D YF+AL+ PC ++ C+ LL GE+CC ++ A +++ W K CC+N GSP+++ +++ + +++K+D +S + L +C+G Y+ M L SC Sbjct: 554 NISLYPACALDSDC-EGGRACFQYMCYPWN------TSTGFRWCSKDSDCSSLTVKEEGDGKDGRCFRHKDRENIGFGICLKKIESKKCWTHHDCLSHLRCTNGYCGDPGYFKALQDRPCEHDEVCEQLLTGEMCCFDLSAADQWKSGQAGWKKKCCNNPSGSPVIRPHKEMEEWEIKKLDRGVSHLAPYFLDFVVCEGLSYEMMLKLSSC 1165
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592921547|gb|GAXK01036828.1| (TSA: Calanus finmarchicus comp406413_c3_seq2 transcribed RNA sequence) HSP 1 Score: 126.716 bits (317), Expect = 1.570e-32 Identity = 76/211 (36.02%), Postives = 108/211 (51.18%), Query Frame = 0 Query: 30 NISIYTPCLDDEECNKEGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCP---VGEKGE--KGECYRHHSRRRXTSGICLDDV--AECYSHDECGSR-KCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMG--VLKESICKGQEYDFMEMLPSC 230 NIS+Y C D +C G +CFQY CYPW+ F C DC V E G+ G C+RH R GICL + +C++H +C S +C NG C D YF+AL+ PC + C+ LL GE+CC + A +++ K CC+N GSP+++ P D+ ++K+D IS + L +C+G Y M L SC Sbjct: 352 NISLYPACALDSDCGG-GRACFQYMCYPWNTSTG------FRWCSDDSDCSSLTVREDGDGKDGRCFRHKDRENIGFGICLKKIETKKCWTHSDCPSHLRCTNGYCGDPTYFKALQERPCEEDKQCEKLLTGEMCCYDTSAADQWKSGQDGIKKKCCNNPSGSPVIRPPSDMGQRQMEKLDKGISHLAPYFLDFIVCEGLSYQMMLKLSSC 963
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592904394|gb|GAXK01053981.1| (TSA: Calanus finmarchicus comp265918_c0_seq3 transcribed RNA sequence) HSP 1 Score: 118.242 bits (295), Expect = 2.000e-30 Identity = 77/214 (35.98%), Postives = 112/214 (52.34%), Query Frame = 0 Query: 38 LDDEECNKEGWS------CFQYFCYPWSEKADAPSPKHFEPCRRSKDC-----PVGEKGEKGECYRHHSRRRXTSGICL--DDVAECYSHDECGSR-KCCNGNCCDGAYFEALK--AFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMGVL--KESICKGQEYDFMEMLPSCGNF 233 + DE+C K + CFQY CYPW+ KA P F C+R DC G G+ G+CYRHH RR +GICL ++ C H +C +C N C + Y++ALK A P + C+DLLLG+ CC + G L+ + +W CC+ +G+P+V DI ++++Q++D +S M L E CK Y M L SC ++ Sbjct: 3 VTDEDCEKTSVNTGHDHRCFQYMCYPWN-KAGGGRP--FRSCKRRSDCYELMEEEGGDGKDGDCYRHHDRRNVFAGICLHPSEILSCSEHKDCPPHLRCTNFYCGEPHYYQALKSEACPRYQDSFCQDLLLGDSCCFDFSGDLS--RDSLDWKMKCCNQEVGAPVVVPQDDIEEDEIQQLDSTLSAMVELNKNEMFCKAFSYQLMVQLSSCESY 629
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592904396|gb|GAXK01053979.1| (TSA: Calanus finmarchicus comp265918_c0_seq1 transcribed RNA sequence) HSP 1 Score: 117.857 bits (294), Expect = 1.430e-29 Identity = 75/222 (33.78%), Postives = 111/222 (50.00%), Query Frame = 0 Query: 30 NISIYTPCLDDEECNK------EGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDC-----PVGEKGEKGECYRHHSRRRXTSGICL--DDVAECYSHDECGSR-KCCNGNCCDGAYFEALK--AFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMGVL--KESICKGQEYDFMEMLPSCGNF 233 +I + C+ DE+C + + CFQY CYPW F C+R DC G G G+CYRHH RR +GICL ++ C H +C +C N C + Y++ALK A P + C+DLLLG+ CC + G L+ + +W CC+ +G+P+V DI ++++Q++D +S M L E CK Y M L SC ++ Sbjct: 253 DILEFPVCVTDEDCEEISMDSGSDYRCFQYMCYPWGRGGGGGP---FRSCKRRSDCHGLVEEEGGDGMDGDCYRHHDRRNVFAGICLHPSEILSCSEHKDCPPHLRCTNFYCGEPHYYQALKSEACPRYQDSFCQDLLLGDSCCFDFSGDLS--RDSLDWKMKCCNQEVGAPVVVPQDDIEEDEIQQLDSTLSAMVELNKNEMFCKAFSYQLMVQLSSCESY 903
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592818872|gb|GAXK01135696.1| (TSA: Calanus finmarchicus comp153216_c0_seq1 transcribed RNA sequence) HSP 1 Score: 112.079 bits (279), Expect = 1.823e-27 Identity = 74/217 (34.10%), Postives = 114/217 (52.53%), Query Frame = 0 Query: 32 SIYTPCLDDEEC----NKEG--WSCFQYFCYPWSEKADAPSPKHFEPCRRSKDC-----PVGEKGEKGECYRHHSRRRXTSGICLDDV--AECYSHDEC-GSRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMGVLK-ESICKGQEYDFMEMLPSCGNF 233 +++ C+ DE+C + G + CFQY CYPW+ KA+ +P F C+R DC G GE G+C+RH RR +GICL+ C+ H +C KC NG C D YF+ LK+F C C++LL+G+LCC + F T +K CC N +P + ++SD+ + ++ ++ + + E +C EY ME L +C +F Sbjct: 342 AVFPVCVTDEDCEGMTQQHGFDYKCFQYMCYPWN-KAEDEAP--FRSCKRRSDCLGLTQEEGGDGEDGDCFRHQDRRNVFTGICLEKRQNTRCFEHPDCPDDLKCINGFCGDTQYFQELKSFSCEVTTFCEELLIGDLCCYDFTA--EFTNETEAVSKKCCSNENSAPAIVPAGEVSDDHIAMVEMAMNTIPADETEIVCNQFEYQTMEKLDACLSF 977
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592777269|gb|GAXK01177299.1| (TSA: Calanus finmarchicus comp140813_c1_seq1 transcribed RNA sequence) HSP 1 Score: 97.8265 bits (242), Expect = 1.104e-22 Identity = 61/190 (32.11%), Postives = 90/190 (47.37%), Query Frame = 0 Query: 30 NISIYTPCLDDEECNK------EGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGE--KGECYRHHSRRRXTSGICL--DDVAECYSHDEC-GSRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRM 208 N++ Y CL D +C + + CFQY CYPW F C+ DC +GE G+C+RH R++ +SGICL + C H +C S C NG C D Y AL C + C+DLLLG+LCC ++ + S + + CC N +P++ + + L ID +S + Sbjct: 148 NLAEYPVCLIDSDCQGIAELKGQDYRCFQYMCYPWEH---GEGEGDFRKCQVKDDCKGMGEGEMEDGDCFRHPERKQVSSGICLRQSESKSCSEHSDCLASLACVNGYCGDRQYLVALGDMQCVDDSLCRDLLLGDLCCYDVRSS----PSNHSLTRKCCQNEHDAPVIPPQDTVEQQHLDMIDKVLSGL 696
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592832575|gb|GAXK01124969.1| (TSA: Calanus finmarchicus comp24648_c0_seq1 transcribed RNA sequence) HSP 1 Score: 93.2041 bits (230), Expect = 2.805e-20 Identity = 49/145 (33.79%), Postives = 75/145 (51.72%), Query Frame = 0 Query: 34 YTPCLDDEECNKEG--WSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDVAECYSHDECG-----SRKCCNGN-CCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETST 170 + C+DD +CN +G ++CFQY CYPW + + C+ ++ C G C+RHH RR G+C++ + +C + + +R CCNG CC YF+ LK PC + GCKD+ G CC + G+ + ST Sbjct: 1004 FKACIDDSDCNSQGNGYACFQYICYPWEDDSAVSKEDRKATCKSNEQC-----GSDLVCFRHHDRRNIHKGLCMEPIVDCSENGDSDCKHGPNRACCNGQYCCGEEYFDQLKQLPCVNDQGCKDMGYGNFCCPDKSGSNSTLPST 1423
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592808288|gb|GAXK01146280.1| (TSA: Calanus finmarchicus comp1270522_c1_seq1 transcribed RNA sequence) HSP 1 Score: 88.1965 bits (217), Expect = 1.156e-19 Identity = 71/195 (36.41%), Postives = 100/195 (51.28%), Query Frame = 0 Query: 53 YFCYPWSEKADAPSPKHFEPCRRSKDCPV-----GEKGEKGECYRHHSRRRXTSGICLD--DVAECYSHDECGSR-KCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGAL-AFETSTP--NWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMGV---LKESICKGQEYDFMEMLPSCGNF 233 Y CYPW+ + F C++ C G G G+CYRH RR +GICLD ++ C+ H C S C NG C D YF+AL C +D C+DLLLG CC +I G + + + P W K CCDN SP+ + QD++ +++ K+D +I L ++IC+G +Y M L SC F Sbjct: 204 YMCYPWNSDKKKGA---FRTCKKRSHCKKLLIYEGGDGGDGDCYRHPDRRTVHTGICLDRREIVPCFDHASCDSTLACTNGVCGDKEYFKALGDMQCEDDDLCEDLLLGSQCCFDIHGGVEGWARAGPEVEWGKTCCDNEY-SPVKRPRQDLTRQEMTKLDKKIRTYYTPWGLDQTICEGLDYAMMLKLSSCLEF 776
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592904395|gb|GAXK01053980.1| (TSA: Calanus finmarchicus comp265918_c0_seq2 transcribed RNA sequence) HSP 1 Score: 87.0409 bits (214), Expect = 2.522e-19 Identity = 57/167 (34.13%), Postives = 82/167 (49.10%), Query Frame = 0 Query: 30 NISIYTPCLDDEECNK------EGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDC-----PVGEKGEKGECYRHHSRRRXTSGICL--DDVAECYSHDECGSR-KCCNGNCCDGAYFEALK--AFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDN 180 +I + C+ DE+C + + CFQY CYPW F C+R DC G G G+CYRHH RR +GICL ++ C H +C +C N C + Y++ALK A P + + C+DLLLG CC + G L+ ++ +W CC+ Sbjct: 253 DILEFPVCVTDEDCEEISMDSGSDYRCFQYMCYPWGRGGGGGP---FRSCKRRSDCHGLVEEEGGDGMDGDCYRHHDRRNVFAGICLHPSEILSCSEHKDCPPHLRCTNFYCGEPHYYQALKSEACPRSQDSFCQDLLLGNSCCFDFSGELSL--NSMDWKMKCCNQ 738
BLAST of EMLSAG00000000553 vs. L. salmonis peptides
Match: EMLSAP00000000553 (pep:novel supercontig:LSalAtl2s:LSalAtl2s108:507460:508614:-1 gene:EMLSAG00000000553 transcript:EMLSAT00000000553 description:"maker-LSalAtl2s108-augustus-gene-5.6") HSP 1 Score: 588.956 bits (1517), Expect = 0.000e+0 Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0 Query: 1 MEILFWVVSFALSLSSLNSVSSLGTTQNLNISIYTPCLDDEECNKEGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDVAECYSHDECGSRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMGVLKESICKGQEYDFMEMLPSCGNFTTTTTTTTTTPPTPKTTQPKVQQSQTQTSDASQLVSILSNLFALCSLGVLLA 285 MEILFWVVSFALSLSSLNSVSSLGTTQNLNISIYTPCLDDEECNKEGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDVAECYSHDECGSRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMGVLKESICKGQEYDFMEMLPSCGNFTTTTTTTTTTPPTPKTTQPKVQQSQTQTSDASQLVSILSNLFALCSLGVLLA Sbjct: 1 MEILFWVVSFALSLSSLNSVSSLGTTQNLNISIYTPCLDDEECNKEGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDVAECYSHDECGSRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMGVLKESICKGQEYDFMEMLPSCGNFTTTTTTTTTTPPTPKTTQPKVQQSQTQTSDASQLVSILSNLFALCSLGVLLA 285
BLAST of EMLSAG00000000553 vs. L. salmonis peptides
Match: EMLSAP00000001363 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1230:102963:105744:1 gene:EMLSAG00000001363 transcript:EMLSAT00000001363 description:"maker-LSalAtl2s1230-augustus-gene-1.22") HSP 1 Score: 98.2117 bits (243), Expect = 2.027e-24 Identity = 61/194 (31.44%), Postives = 87/194 (44.85%), Query Frame = 0 Query: 2 EILFWVVSFALSLSSLNSVSSLGTTQNLNISIYTPCLDDEECNKEG--WSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDV--AECYSHDECG-SRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIP 190 ++ S AL+ + +QN S CLDD +C K G ++CF+YFCYPW + +D + CR +C G+ C+RHH R G+CLDD+ EC +CG S C G CC+ Y PC ++ GC DL +G+ CC N + VCCD + +P Sbjct: 5 HVIILFASMALAAPEFDGHF---LSQNQQSSPLPVCLDDSDCVKHGDKYACFKYFCYPWKDDSDVSEKFRRQTCREDSECNEGQS-----CFRHHDIRSINRGLCLDDILLEECEIESDCGQSYGXCGGXCCEMEYHMRFADLPCVSDLGCMDLGMGKYCC-----------PRHNASSVCCDTDPNPSTTPVP 179
BLAST of EMLSAG00000000553 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold536_size144403-snap-gene-0.13 (protein:Tk11926 transcript:maker-scaffold536_size144403-snap-gene-0.13-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 80.1073 bits (196), Expect = 1.521e-18 Identity = 45/125 (36.00%), Postives = 64/125 (51.20%), Query Frame = 0 Query: 49 SCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDVAECYSHDECGSRKCCNGNCC-DGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPN 172 S FQY CYPW + + P + E CR+ +C GE ECYRH+ RR G+C D++ EC + ++C C G C + Y+ PC ++ GC+DL LG+ CC G + PN Sbjct: 13 SLFQYVCYPWRDDSKVPEDEKRETCRKDSECSSGE-----ECYRHYDRRNIVKGLCFDEITECETPNDCSDGFGCCGGYCCEQKYYAHFSDLPCVSHFGCRDLGLGQFCCPRDNGTDTCCNTDPN 132 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000553 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 23
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BLAST of EMLSAG00000000553 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000000553 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000553 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000553 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000553 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s108:507460..508614- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000553-683319 ID=EMLSAG00000000553-683319|Name=EMLSAG00000000553|organism=Lepeophtheirus salmonis|type=gene|length=1155bp|location=Sequence derived from alignment at LSalAtl2s108:507460..508614- (Lepeophtheirus salmonis)back to top Add to Basket
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