EMLSAG00000000553, EMLSAG00000000553-683319 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000553
Unique NameEMLSAG00000000553-683319
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
J F78 UN9_g595 female
  1. PreAdult2
  2. Adult
No visible phenotype
no visible phenotype
27.02.2013 - 08:22
08.04.2013 - 00:00
Homology
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592835294|gb|GAXK01122250.1| (TSA: Calanus finmarchicus comp106713_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 142.51 bits (358), Expect = 1.111e-37
Identity = 80/222 (36.04%), Postives = 123/222 (55.41%), Query Frame = 0
Query:   30 NISIYTPCLDDEECNK------EGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPV-----GEKGEKGECYRHHSRRRXTSGICLDD--VAECYSHDECGS-RKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGAL-AFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQIS---RMGVLKESICKGQEYDFMEMLPSCGNF 233
            +I  +  C+ D++C+       E + CFQY CYPW+ KA     + F  C+R  DC       G  G  G+C+RH  RR   SGICL D  +  C+ H +C + RKC N  C +  YF AL+   C  +  C+D+LLG+ CC +I G L A+++  P+W   CCDN   +P+ Q P DIS++ ++K++ +I+   +   +   ICKG +Y+ M  L +C  +
Sbjct:  583 DIVKFPVCVTDDDCDNISDKKHESYKCFQYMCYPWNNKAQG---QPFRTCKRRSDCKALSSAEGGDGGNGDCFRHQDRRNVFSGICLSDSDMKPCFEHTDCAAGRKCTNQFCGEEQYFTALEELSCKKDSFCQDMLLGDHCCFDIRGGLSAWDSGEPDWGMKCCDNK-AAPVKQPPDDISNDQIKKLNQKITVHFKKFEIDNLICKGLKYEMMLKLSACDEY 1236          
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592921548|gb|GAXK01036827.1| (TSA: Calanus finmarchicus comp406413_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 131.724 bits (330), Expect = 4.580e-34
Identity = 74/211 (35.07%), Postives = 118/211 (55.92%), Query Frame = 0
Query:   30 NISIYTPCLDDEECNKEGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCP---VGEKGE--KGECYRHHSRRRXTSGICLDDV--AECYSHDECGSR-KCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMG--VLKESICKGQEYDFMEMLPSC 230
            NIS+Y  C  D +C + G +CFQY CYPW+      +   F  C +  DC    V E+G+   G C+RH  R     GICL  +   +C++H +C S  +C NG C D  YF+AL+  PC  ++ C+ LL GE+CC ++  A  +++    W K CC+N  GSP+++  +++ + +++K+D  +S +    L   +C+G  Y+ M  L SC
Sbjct:  554 NISLYPACALDSDC-EGGRACFQYMCYPWN------TSTGFRWCSKDSDCSSLTVKEEGDGKDGRCFRHKDRENIGFGICLKKIESKKCWTHHDCLSHLRCTNGYCGDPGYFKALQDRPCEHDEVCEQLLTGEMCCFDLSAADQWKSGQAGWKKKCCNNPSGSPVIRPHKEMEEWEIKKLDRGVSHLAPYFLDFVVCEGLSYEMMLKLSSC 1165          
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592921547|gb|GAXK01036828.1| (TSA: Calanus finmarchicus comp406413_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 126.716 bits (317), Expect = 1.570e-32
Identity = 76/211 (36.02%), Postives = 108/211 (51.18%), Query Frame = 0
Query:   30 NISIYTPCLDDEECNKEGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCP---VGEKGE--KGECYRHHSRRRXTSGICLDDV--AECYSHDECGSR-KCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMG--VLKESICKGQEYDFMEMLPSC 230
            NIS+Y  C  D +C   G +CFQY CYPW+          F  C    DC    V E G+   G C+RH  R     GICL  +   +C++H +C S  +C NG C D  YF+AL+  PC  +  C+ LL GE+CC +   A  +++      K CC+N  GSP+++ P D+    ++K+D  IS +    L   +C+G  Y  M  L SC
Sbjct:  352 NISLYPACALDSDCGG-GRACFQYMCYPWNTSTG------FRWCSDDSDCSSLTVREDGDGKDGRCFRHKDRENIGFGICLKKIETKKCWTHSDCPSHLRCTNGYCGDPTYFKALQERPCEEDKQCEKLLTGEMCCYDTSAADQWKSGQDGIKKKCCNNPSGSPVIRPPSDMGQRQMEKLDKGISHLAPYFLDFIVCEGLSYQMMLKLSSC 963          
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592904394|gb|GAXK01053981.1| (TSA: Calanus finmarchicus comp265918_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 118.242 bits (295), Expect = 2.000e-30
Identity = 77/214 (35.98%), Postives = 112/214 (52.34%), Query Frame = 0
Query:   38 LDDEECNKEGWS------CFQYFCYPWSEKADAPSPKHFEPCRRSKDC-----PVGEKGEKGECYRHHSRRRXTSGICL--DDVAECYSHDECGSR-KCCNGNCCDGAYFEALK--AFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMGVL--KESICKGQEYDFMEMLPSCGNF 233
            + DE+C K   +      CFQY CYPW+ KA    P  F  C+R  DC       G  G+ G+CYRHH RR   +GICL   ++  C  H +C    +C N  C +  Y++ALK  A P   +  C+DLLLG+ CC +  G L+    + +W   CC+  +G+P+V    DI ++++Q++D  +S M  L   E  CK   Y  M  L SC ++
Sbjct:    3 VTDEDCEKTSVNTGHDHRCFQYMCYPWN-KAGGGRP--FRSCKRRSDCYELMEEEGGDGKDGDCYRHHDRRNVFAGICLHPSEILSCSEHKDCPPHLRCTNFYCGEPHYYQALKSEACPRYQDSFCQDLLLGDSCCFDFSGDLS--RDSLDWKMKCCNQEVGAPVVVPQDDIEEDEIQQLDSTLSAMVELNKNEMFCKAFSYQLMVQLSSCESY 629          
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592904396|gb|GAXK01053979.1| (TSA: Calanus finmarchicus comp265918_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 117.857 bits (294), Expect = 1.430e-29
Identity = 75/222 (33.78%), Postives = 111/222 (50.00%), Query Frame = 0
Query:   30 NISIYTPCLDDEECNK------EGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDC-----PVGEKGEKGECYRHHSRRRXTSGICL--DDVAECYSHDECGSR-KCCNGNCCDGAYFEALK--AFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMGVL--KESICKGQEYDFMEMLPSCGNF 233
            +I  +  C+ DE+C +        + CFQY CYPW           F  C+R  DC       G  G  G+CYRHH RR   +GICL   ++  C  H +C    +C N  C +  Y++ALK  A P   +  C+DLLLG+ CC +  G L+    + +W   CC+  +G+P+V    DI ++++Q++D  +S M  L   E  CK   Y  M  L SC ++
Sbjct:  253 DILEFPVCVTDEDCEEISMDSGSDYRCFQYMCYPWGRGGGGGP---FRSCKRRSDCHGLVEEEGGDGMDGDCYRHHDRRNVFAGICLHPSEILSCSEHKDCPPHLRCTNFYCGEPHYYQALKSEACPRYQDSFCQDLLLGDSCCFDFSGDLS--RDSLDWKMKCCNQEVGAPVVVPQDDIEEDEIQQLDSTLSAMVELNKNEMFCKAFSYQLMVQLSSCESY 903          
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592818872|gb|GAXK01135696.1| (TSA: Calanus finmarchicus comp153216_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 112.079 bits (279), Expect = 1.823e-27
Identity = 74/217 (34.10%), Postives = 114/217 (52.53%), Query Frame = 0
Query:   32 SIYTPCLDDEEC----NKEG--WSCFQYFCYPWSEKADAPSPKHFEPCRRSKDC-----PVGEKGEKGECYRHHSRRRXTSGICLDDV--AECYSHDEC-GSRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMGVLK-ESICKGQEYDFMEMLPSCGNF 233
            +++  C+ DE+C     + G  + CFQY CYPW+ KA+  +P  F  C+R  DC       G  GE G+C+RH  RR   +GICL+      C+ H +C    KC NG C D  YF+ LK+F C     C++LL+G+LCC +      F   T   +K CC N   +P +    ++SD+ +  ++  ++ +   + E +C   EY  ME L +C +F
Sbjct:  342 AVFPVCVTDEDCEGMTQQHGFDYKCFQYMCYPWN-KAEDEAP--FRSCKRRSDCLGLTQEEGGDGEDGDCFRHQDRRNVFTGICLEKRQNTRCFEHPDCPDDLKCINGFCGDTQYFQELKSFSCEVTTFCEELLIGDLCCYDFTA--EFTNETEAVSKKCCSNENSAPAIVPAGEVSDDHIAMVEMAMNTIPADETEIVCNQFEYQTMEKLDACLSF 977          
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592777269|gb|GAXK01177299.1| (TSA: Calanus finmarchicus comp140813_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 97.8265 bits (242), Expect = 1.104e-22
Identity = 61/190 (32.11%), Postives = 90/190 (47.37%), Query Frame = 0
Query:   30 NISIYTPCLDDEECNK------EGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGE--KGECYRHHSRRRXTSGICL--DDVAECYSHDEC-GSRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRM 208
            N++ Y  CL D +C        + + CFQY CYPW           F  C+   DC    +GE   G+C+RH  R++ +SGICL   +   C  H +C  S  C NG C D  Y  AL    C  +  C+DLLLG+LCC ++  +     S  +  + CC N   +P++     +  + L  ID  +S +
Sbjct:  148 NLAEYPVCLIDSDCQGIAELKGQDYRCFQYMCYPWEH---GEGEGDFRKCQVKDDCKGMGEGEMEDGDCFRHPERKQVSSGICLRQSESKSCSEHSDCLASLACVNGYCGDRQYLVALGDMQCVDDSLCRDLLLGDLCCYDVRSS----PSNHSLTRKCCQNEHDAPVIPPQDTVEQQHLDMIDKVLSGL 696          
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592832575|gb|GAXK01124969.1| (TSA: Calanus finmarchicus comp24648_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 93.2041 bits (230), Expect = 2.805e-20
Identity = 49/145 (33.79%), Postives = 75/145 (51.72%), Query Frame = 0
Query:   34 YTPCLDDEECNKEG--WSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDVAECYSHDECG-----SRKCCNGN-CCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETST 170
            +  C+DD +CN +G  ++CFQY CYPW + +          C+ ++ C     G    C+RHH RR    G+C++ + +C  + +       +R CCNG  CC   YF+ LK  PC  + GCKD+  G  CC +  G+ +   ST
Sbjct: 1004 FKACIDDSDCNSQGNGYACFQYICYPWEDDSAVSKEDRKATCKSNEQC-----GSDLVCFRHHDRRNIHKGLCMEPIVDCSENGDSDCKHGPNRACCNGQYCCGEEYFDQLKQLPCVNDQGCKDMGYGNFCCPDKSGSNSTLPST 1423          
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592808288|gb|GAXK01146280.1| (TSA: Calanus finmarchicus comp1270522_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 88.1965 bits (217), Expect = 1.156e-19
Identity = 71/195 (36.41%), Postives = 100/195 (51.28%), Query Frame = 0
Query:   53 YFCYPWSEKADAPSPKHFEPCRRSKDCPV-----GEKGEKGECYRHHSRRRXTSGICLD--DVAECYSHDECGSR-KCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGAL-AFETSTP--NWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMGV---LKESICKGQEYDFMEMLPSCGNF 233
            Y CYPW+      +   F  C++   C       G  G  G+CYRH  RR   +GICLD  ++  C+ H  C S   C NG C D  YF+AL    C  +D C+DLLLG  CC +I G +  +  + P   W K CCDN   SP+ +  QD++ +++ K+D +I        L ++IC+G +Y  M  L SC  F
Sbjct:  204 YMCYPWNSDKKKGA---FRTCKKRSHCKKLLIYEGGDGGDGDCYRHPDRRTVHTGICLDRREIVPCFDHASCDSTLACTNGVCGDKEYFKALGDMQCEDDDLCEDLLLGSQCCFDIHGGVEGWARAGPEVEWGKTCCDNEY-SPVKRPRQDLTRQEMTKLDKKIRTYYTPWGLDQTICEGLDYAMMLKLSSCLEF 776          
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592904395|gb|GAXK01053980.1| (TSA: Calanus finmarchicus comp265918_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 87.0409 bits (214), Expect = 2.522e-19
Identity = 57/167 (34.13%), Postives = 82/167 (49.10%), Query Frame = 0
Query:   30 NISIYTPCLDDEECNK------EGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDC-----PVGEKGEKGECYRHHSRRRXTSGICL--DDVAECYSHDECGSR-KCCNGNCCDGAYFEALK--AFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDN 180
            +I  +  C+ DE+C +        + CFQY CYPW           F  C+R  DC       G  G  G+CYRHH RR   +GICL   ++  C  H +C    +C N  C +  Y++ALK  A P + +  C+DLLLG  CC +  G L+   ++ +W   CC+ 
Sbjct:  253 DILEFPVCVTDEDCEEISMDSGSDYRCFQYMCYPWGRGGGGGP---FRSCKRRSDCHGLVEEEGGDGMDGDCYRHHDRRNVFAGICLHPSEILSCSEHKDCPPHLRCTNFYCGEPHYYQALKSEACPRSQDSFCQDLLLGNSCCFDFSGELSL--NSMDWKMKCCNQ 738          
BLAST of EMLSAG00000000553 vs. L. salmonis peptides
Match: EMLSAP00000000553 (pep:novel supercontig:LSalAtl2s:LSalAtl2s108:507460:508614:-1 gene:EMLSAG00000000553 transcript:EMLSAT00000000553 description:"maker-LSalAtl2s108-augustus-gene-5.6")

HSP 1 Score: 588.956 bits (1517), Expect = 0.000e+0
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0
Query:    1 MEILFWVVSFALSLSSLNSVSSLGTTQNLNISIYTPCLDDEECNKEGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDVAECYSHDECGSRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMGVLKESICKGQEYDFMEMLPSCGNFTTTTTTTTTTPPTPKTTQPKVQQSQTQTSDASQLVSILSNLFALCSLGVLLA 285
            MEILFWVVSFALSLSSLNSVSSLGTTQNLNISIYTPCLDDEECNKEGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDVAECYSHDECGSRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMGVLKESICKGQEYDFMEMLPSCGNFTTTTTTTTTTPPTPKTTQPKVQQSQTQTSDASQLVSILSNLFALCSLGVLLA
Sbjct:    1 MEILFWVVSFALSLSSLNSVSSLGTTQNLNISIYTPCLDDEECNKEGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDVAECYSHDECGSRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMGVLKESICKGQEYDFMEMLPSCGNFTTTTTTTTTTPPTPKTTQPKVQQSQTQTSDASQLVSILSNLFALCSLGVLLA 285          
BLAST of EMLSAG00000000553 vs. L. salmonis peptides
Match: EMLSAP00000001363 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1230:102963:105744:1 gene:EMLSAG00000001363 transcript:EMLSAT00000001363 description:"maker-LSalAtl2s1230-augustus-gene-1.22")

HSP 1 Score: 98.2117 bits (243), Expect = 2.027e-24
Identity = 61/194 (31.44%), Postives = 87/194 (44.85%), Query Frame = 0
Query:    2 EILFWVVSFALSLSSLNSVSSLGTTQNLNISIYTPCLDDEECNKEG--WSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDV--AECYSHDECG-SRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIP 190
             ++    S AL+    +       +QN   S    CLDD +C K G  ++CF+YFCYPW + +D       + CR   +C  G+      C+RHH  R    G+CLDD+   EC    +CG S   C G CC+  Y       PC ++ GC DL +G+ CC              N + VCCD +       +P
Sbjct:    5 HVIILFASMALAAPEFDGHF---LSQNQQSSPLPVCLDDSDCVKHGDKYACFKYFCYPWKDDSDVSEKFRRQTCREDSECNEGQS-----CFRHHDIRSINRGLCLDDILLEECEIESDCGQSYGXCGGXCCEMEYHMRFADLPCVSDLGCMDLGMGKYCC-----------PRHNASSVCCDTDPNPSTTPVP 179          
BLAST of EMLSAG00000000553 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold536_size144403-snap-gene-0.13 (protein:Tk11926 transcript:maker-scaffold536_size144403-snap-gene-0.13-mRNA-1 annotation:"hypothetical protein")

HSP 1 Score: 80.1073 bits (196), Expect = 1.521e-18
Identity = 45/125 (36.00%), Postives = 64/125 (51.20%), Query Frame = 0
Query:   49 SCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDVAECYSHDECGSRKCCNGNCC-DGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPN 172
            S FQY CYPW + +  P  +  E CR+  +C  GE     ECYRH+ RR    G+C D++ EC + ++C     C G  C +  Y+      PC ++ GC+DL LG+ CC    G      + PN
Sbjct:   13 SLFQYVCYPWRDDSKVPEDEKRETCRKDSECSSGE-----ECYRHYDRRNIVKGLCFDEITECETPNDCSDGFGCCGGYCCEQKYYAHFSDLPCVSHFGCRDLGLGQFCCPRDNGTDTCCNTDPN 132          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000553 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000553 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 23
Match NameE-valueIdentityDescription
gi|592835294|gb|GAXK01122250.1|1.111e-3736.04TSA: Calanus finmarchicus comp106713_c0_seq1 trans... [more]
gi|592921548|gb|GAXK01036827.1|4.580e-3435.07TSA: Calanus finmarchicus comp406413_c3_seq1 trans... [more]
gi|592921547|gb|GAXK01036828.1|1.570e-3236.02TSA: Calanus finmarchicus comp406413_c3_seq2 trans... [more]
gi|592904394|gb|GAXK01053981.1|2.000e-3035.98TSA: Calanus finmarchicus comp265918_c0_seq3 trans... [more]
gi|592904396|gb|GAXK01053979.1|1.430e-2933.78TSA: Calanus finmarchicus comp265918_c0_seq1 trans... [more]
gi|592818872|gb|GAXK01135696.1|1.823e-2734.10TSA: Calanus finmarchicus comp153216_c0_seq1 trans... [more]
gi|592777269|gb|GAXK01177299.1|1.104e-2232.11TSA: Calanus finmarchicus comp140813_c1_seq1 trans... [more]
gi|592832575|gb|GAXK01124969.1|2.805e-2033.79TSA: Calanus finmarchicus comp24648_c0_seq1 transc... [more]
gi|592808288|gb|GAXK01146280.1|1.156e-1936.41TSA: Calanus finmarchicus comp1270522_c1_seq1 tran... [more]
gi|592904395|gb|GAXK01053980.1|2.522e-1934.13TSA: Calanus finmarchicus comp265918_c0_seq2 trans... [more]

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BLAST of EMLSAG00000000553 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000005530.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s108:50746... [more]
EMLSAP000000013632.027e-2431.44pep:novel supercontig:LSalAtl2s:LSalAtl2s1230:1029... [more]
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BLAST of EMLSAG00000000553 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000553 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000553 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000553 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold536_size144403-snap-gene-0.131.521e-1836.00protein:Tk11926 transcript:maker-scaffold536_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s108supercontigLSalAtl2s108:507460..508614 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s108-augustus-gene-5.6
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000553 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000553EMLSAT00000000553-696400Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s108:507460..508614-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000553-683319 ID=EMLSAG00000000553-683319|Name=EMLSAG00000000553|organism=Lepeophtheirus salmonis|type=gene|length=1155bp|location=Sequence derived from alignment at LSalAtl2s108:507460..508614- (Lepeophtheirus salmonis)
ATGGAGATCCTTTTTTGGGTAGTTTCTTTCGCTCTATCTCTCAGTTCCTT GAATTCCGTTTCTTCCCTCGGCACGACTCAGAATTTAAACATTTCCATCT ACACCCCCTGTCTGGATGATGAAGAATGTAACAAAGAGGGCTGGTCCTGC TTTCAGTACTTTTGTTACCCCTGGTCTGAAAAGGCAGACGCTCCAAGCCC AAAGCACTTTGAACCCTGTCGAAGAAGTAAGGATTGCCCTGTAGGTGAGA AGGGGGAAAAAGGAGAATGCTACAGACATCATAGTCGGAGAAGGGMCACC TCAGGGATTTGCTTGGACGACGTGGCTGAATGCTACTCCCATGATGAATG TGGCTCAAGAAAGTGTTGCAATGGTAACTGCTGTGATGGTGCCTATTTTG AGGCCCTTAAAGCATTCCCGTGCACCACGAACGATGGATGTAAAGTAAGT CCCTCCTATTATCCACACCCATTTTCATCATGTATTTTAATTGAATTTGG CGGGAAGGCATTTACATAATATGTATATGTGCTCATATTTAAATGTGTGA ATGGGGGTGTCATATTCTATAATAGGATGATTCCATGAAGTGATTTGTAT ACAATTTTCTATTTATACATGATGTTTTTTCTCCTTCTTTAATTTGTGCT AGGATTTATTACTTGGAGAGCTTTGTTGTGTGAATATCATGGGTGCATTG GCATTCGAAACATCTACACCCAACTGGAACAAAGTCTGCTGTGACAACAA CCTTGGGAGCCCAATAGTACAAATCCCTCAGGATATTTCTGACGAGGACC TTCAAAAAATTGATCATCAGATCTCAAGAATGGGAGTTCTTAAAGAAGTA AGTTTAGATGTGTTTAGAGGTCTTTCAGAAAATGTACAAATATTCTAACT CATTTTTTTATGTCTCTCTCTCCMTATTTTTTACAGTCCATTTGCAAAGG ACAAGAGTATGATTTTATGGAGATGCTTCCTTCCTGTGGTAATTTCACAA CCACTACAACAACGACCACGACGACKCCTCCAACACCTAAAACCACACAG CCAAAAGTTCAGCAATCTCAGACTCAAACGTCTGATGCATCACAGCTAGT TTCTATTCTGTCAAATCTCTTTGCTTTGTGTTCTCTTGGAGTGCTCCTAG CATAG
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