EMLSAG00000000553, EMLSAG00000000553-683319 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000553
Unique NameEMLSAG00000000553-683319
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
J F78 UN9_g595 female
  1. PreAdult2
  2. Adult
 No visible phenotype
no visible phenotype 		27.02.2013 - 08:22
08.04.2013 - 00:00
Homology
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BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592887782|gb|GAXK01070593.1| (TSA: Calanus finmarchicus comp215788_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 78.9518 bits (193), Expect = 5.841e-16
Identity = 65/207 (31.40%), Postives = 95/207 (45.89%), Query Frame = 0 
Query:   37 CLDDEECNKEGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGE-----CYRHHSRRRXTSGICLDD--VAECYSHDEC-GSRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDED-LQKIDHQISRMGV-LKESICKGQEYDFMEMLPSCGNF 233
            C D  E     + CFQY C+PW    D      F  C+  KDC    + E G+     C+RH  RR+   G+C+       CY   +C  + KC N  C +  YF AL+   C  +D C+DL LG  CC        ++ S+    + CCD + G   V +P D  DED L +++ ++  +    KE +C     + M  L SC +F
Sbjct:  377 CRDISEQGDADYRCFQYRCFPWD---DQELQGEFRSCKTRKDCLELGEEEGGDGDDGECFRHQDRRKINMGMCVRKRLALHCYGPSDCLENEKCVNTYCGEEEYFMALQDLQCFRHDYCQDLYLGTHCC--------YDFSSDILGRKCCDAD-GDAGVIVPGDDLDEDTLAEMNTKVGYIAEDEKEEVCLAFLPEVMNKLGSCSSF 961
[Close]
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592808729|gb|GAXK01145839.1| (TSA: Calanus finmarchicus comp1045456_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 63.5438 bits (153), Expect = 1.413e-10
Identity = 42/133 (31.58%), Postives = 59/133 (44.36%), Query Frame = 0 
Query:   30 NISIYTPCLDDEECNKEG--WSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICL--DDVAECYSHDECGSR--KCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELC 156
            N ++   C+DD +C   G  ++C+ Y C  W   AD       + C R   C  G +     CYRHH+ R  ++GIC     +  C SHDEC      CC   CC   Y+   + F C T+  C+    G  C
Sbjct:   86 NSTLSVGCIDDSDCVPLGHEYACYFYRCLNWMGGADTG----LQHCSRDWQCGAGSR-----CYRHHNLREVSAGICFPASQLETCRSHDECEGETPHCCGMWCCPPLYYRQWQNFSCVTDMQCRTWNTGSFC 457
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BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592904393|gb|GAXK01053982.1| (TSA: Calanus finmarchicus comp265918_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 59.6918 bits (143), Expect = 5.851e-10
Identity = 36/104 (34.62%), Postives = 48/104 (46.15%), Query Frame = 0 
Query:   30 NISIYTPCLDDEECNK------EGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDC-----PVGEKGEKGECYRHHSRRRXTSGICL--DDVAECYSHDECGSR 120
            +I  +  C+ DE+C +        + CFQY CYPW           F  C+R  DC       G  G  G+CYRHH RR   +GICL   ++  C  H +C S 
Sbjct:  253 DILEFPVCVTDEDCEEISMDSGSDYRCFQYMCYPWGRGGGGGP---FRSCKRRSDCHGLVEEEGGDGMDGDCYRHHDRRNVFAGICLHPSEILSCSEHKDCPSH 555
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BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592868215|gb|GAXK01089347.1| (TSA: Calanus finmarchicus comp890548_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 52.373 bits (124), Expect = 4.784e-7
Identity = 36/131 (27.48%), Postives = 52/131 (39.69%), Query Frame = 0 
Query:   37 CLDDEECNKEG--WSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDVA--ECYSHDECGS------RKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCC 157
            C+DD +C   G  ++C+ Y C  W +K         E C R + C     G    CYR       +SG+C   +    C  H  C        + CC   CC   Y+   + F C T+  C+    G+ CC
Sbjct:  110 CIDDSDCTSLGHKYACYLYQCINWMDKDTG-----MEHCDRDEQC-----GHASTCYRPPHHHDPSSGLCFPSIQLQHCSEHSSCSGYSTSALQYCCGRRCCPLQYYRQWRQFSCVTDTQCRQWNTGDRCC 472
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BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592935525|gb|GAXK01023028.1| (TSA: Calanus finmarchicus comp6055635_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 46.9802 bits (110), Expect = 1.162e-5
Identity = 34/114 (29.82%), Postives = 44/114 (38.60%), Query Frame = 0 
Query:   44 NKEGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKD-----CPVGEKGEKGECYRHHSRRRXTSGICLD----------DVAECYSHDEC-GSRKCCNGNCCDGAYFEALKAFPC 141
            N   + CFQY C+PW           F  C  +KD        G  G  G C RH  RR    G+C+             + C+  + C  ++KC    C D  Y  ALK  PC
Sbjct:    5 NSADYRCFQYRCFPWKYTG---LQGDFRSCTTNKDGSGLMVVEGGDGGAGLCLRHPDRRNVFMGMCVKARQLFTGLIVSGSYCFEPNNCPDTKKCIKNYCGDEKYLIALKNLPC 337
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BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592756689|gb|GAXK01197724.1| (TSA: Calanus finmarchicus comp779991_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 47.3654 bits (111), Expect = 1.778e-5
Identity = 24/81 (29.63%), Postives = 41/81 (50.62%), Query Frame = 0 
Query:  155 LCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMG--VLKESICKGQEYDFMEMLPSCGNF 233
             CC ++     +      W K CC N  GSP++Q P +++   + K+D  IS +   +L   +C+G  Y  M  +PSC ++
Sbjct:  263 FCCFDLSSPSDWTNEQNTWQKKCCTNLSGSPMIQPPDNLTQPQMDKLDKGISYLAPFLLDFIVCEGLPYHTMVEVPSCIDY 505
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BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592921544|gb|GAXK01036831.1| (TSA: Calanus finmarchicus comp406413_c3_seq5 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 8.013e-2
Identity = 16/33 (48.48%), Postives = 20/33 (60.61%), Query Frame = 0 
Query:   30 NISIYTPCLDDEECNKEGWSCFQYFCYPWSEKA 62
            NIS+Y  C  D +C   G +CFQY CYPW+   
Sbjct:  352 NISLYPACALDSDCGG-GRACFQYMCYPWNTST 447
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BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592906510|gb|GAXK01051865.1| (TSA: Calanus finmarchicus comp28263_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 2.244e-1
Identity = 22/67 (32.84%), Postives = 32/67 (47.76%), Query Frame = 0 
Query:  109 AECYSHDEC-GSRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWN 174
            ++C+S ++C  S    +G   + AY +A +AFP  T + CK LL     C  I   L F    P W 
Sbjct:  652 SKCWSWNKCHASHDRTHGRKFEPAYAQAKQAFPLWTVESCKPLLPRPSVCFQI--CLNFPAEGPTWQ 846
[Close]
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592906511|gb|GAXK01051864.1| (TSA: Calanus finmarchicus comp28263_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 2.248e-1
Identity = 22/67 (32.84%), Postives = 32/67 (47.76%), Query Frame = 0 
Query:  109 AECYSHDEC-GSRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWN 174
            ++C+S ++C  S    +G   + AY +A +AFP  T + CK LL     C  I   L F    P W 
Sbjct:  652 SKCWSWNKCHASHDRTHGRKFEPAYAQAKQAFPLWTVESCKPLLPRPSVCFQI--CLNFPAEGPTWQ 846
[Close]
BLAST of EMLSAG00000000553 vs. C. finmarchicus
Match: gi|592791373|gb|GAXK01163195.1| (TSA: Calanus finmarchicus comp1050622_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 5.987e-1
Identity = 18/45 (40.00%), Postives = 27/45 (60.00%), Query Frame = 0 
Query:  186 IVQIPQDISDEDLQK-IDHQISRMGVLKESICKGQEYDFMEMLPS 229
            +VQ+   +S EDLQ  +D ++    VL E   + QEY F+ +LPS
Sbjct:  311 VVQVSVPLSSEDLQHFVDLEVEVWNVLTEVKQEDQEYRFLILLPS 445
[Close]
BLAST of EMLSAG00000000553 vs. L. salmonis peptides
Match: EMLSAP00000000553 (pep:novel supercontig:LSalAtl2s:LSalAtl2s108:507460:508614:-1 gene:EMLSAG00000000553 transcript:EMLSAT00000000553 description:"maker-LSalAtl2s108-augustus-gene-5.6")

HSP 1 Score: 588.956 bits (1517), Expect = 0.000e+0
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0 
Query:    1 MEILFWVVSFALSLSSLNSVSSLGTTQNLNISIYTPCLDDEECNKEGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDVAECYSHDECGSRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMGVLKESICKGQEYDFMEMLPSCGNFTTTTTTTTTTPPTPKTTQPKVQQSQTQTSDASQLVSILSNLFALCSLGVLLA 285
            MEILFWVVSFALSLSSLNSVSSLGTTQNLNISIYTPCLDDEECNKEGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDVAECYSHDECGSRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMGVLKESICKGQEYDFMEMLPSCGNFTTTTTTTTTTPPTPKTTQPKVQQSQTQTSDASQLVSILSNLFALCSLGVLLA
Sbjct:    1 MEILFWVVSFALSLSSLNSVSSLGTTQNLNISIYTPCLDDEECNKEGWSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDVAECYSHDECGSRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIPQDISDEDLQKIDHQISRMGVLKESICKGQEYDFMEMLPSCGNFTTTTTTTTTTPPTPKTTQPKVQQSQTQTSDASQLVSILSNLFALCSLGVLLA 285
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BLAST of EMLSAG00000000553 vs. L. salmonis peptides
Match: EMLSAP00000001363 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1230:102963:105744:1 gene:EMLSAG00000001363 transcript:EMLSAT00000001363 description:"maker-LSalAtl2s1230-augustus-gene-1.22")

HSP 1 Score: 98.2117 bits (243), Expect = 2.027e-24
Identity = 61/194 (31.44%), Postives = 87/194 (44.85%), Query Frame = 0 
Query:    2 EILFWVVSFALSLSSLNSVSSLGTTQNLNISIYTPCLDDEECNKEG--WSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDV--AECYSHDECG-SRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIP 190
             ++    S AL+    +       +QN   S    CLDD +C K G  ++CF+YFCYPW + +D       + CR   +C  G+      C+RHH  R    G+CLDD+   EC    +CG S   C G CC+  Y       PC ++ GC DL +G+ CC              N + VCCD +       +P
Sbjct:    5 HVIILFASMALAAPEFDGHF---LSQNQQSSPLPVCLDDSDCVKHGDKYACFKYFCYPWKDDSDVSEKFRRQTCREDSECNEGQS-----CFRHHDIRSINRGLCLDDILLEECEIESDCGQSYGXCGGXCCEMEYHMRFADLPCVSDLGCMDLGMGKYCC-----------PRHNASSVCCDTDPNPSTTPVP 179
[Close]
BLAST of EMLSAG00000000553 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold536_size144403-snap-gene-0.13 (protein:Tk11926 transcript:maker-scaffold536_size144403-snap-gene-0.13-mRNA-1 annotation:"hypothetical protein")

HSP 1 Score: 80.1073 bits (196), Expect = 1.521e-18
Identity = 45/125 (36.00%), Postives = 64/125 (51.20%), Query Frame = 0 
Query:   49 SCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDVAECYSHDECGSRKCCNGNCC-DGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPN 172
            S FQY CYPW + +  P  +  E CR+  +C  GE     ECYRH+ RR    G+C D++ EC + ++C     C G  C +  Y+      PC ++ GC+DL LG+ CC    G      + PN
Sbjct:   13 SLFQYVCYPWRDDSKVPEDEKRETCRKDSECSSGE-----ECYRHYDRRNIVKGLCFDEITECETPNDCSDGFGCCGGYCCEQKYYAHFSDLPCVSHFGCRDLGLGQFCCPRDNGTDTCCNTDPN 132
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000553 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000553 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 23
Match NameE-valueIdentityDescription
gi|592887782|gb|GAXK01070593.1|5.841e-1631.40TSA: Calanus finmarchicus comp215788_c2_seq1 trans... [more]
gi|592808729|gb|GAXK01145839.1|1.413e-1031.58TSA: Calanus finmarchicus comp1045456_c0_seq1 tran... [more]
gi|592904393|gb|GAXK01053982.1|5.851e-1034.62TSA: Calanus finmarchicus comp265918_c0_seq4 trans... [more]
gi|592868215|gb|GAXK01089347.1|4.784e-727.48TSA: Calanus finmarchicus comp890548_c1_seq1 trans... [more]
gi|592935525|gb|GAXK01023028.1|1.162e-529.82TSA: Calanus finmarchicus comp6055635_c0_seq1 tran... [more]
gi|592756689|gb|GAXK01197724.1|1.778e-529.63TSA: Calanus finmarchicus comp779991_c0_seq1 trans... [more]
gi|592921544|gb|GAXK01036831.1|8.013e-248.48TSA: Calanus finmarchicus comp406413_c3_seq5 trans... [more]
gi|592906510|gb|GAXK01051865.1|2.244e-132.84TSA: Calanus finmarchicus comp28263_c0_seq2 transc... [more]
gi|592906511|gb|GAXK01051864.1|2.248e-132.84TSA: Calanus finmarchicus comp28263_c0_seq1 transc... [more]
gi|592791373|gb|GAXK01163195.1|5.987e-140.00TSA: Calanus finmarchicus comp1050622_c0_seq2 tran... [more]

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BLAST of EMLSAG00000000553 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000005530.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s108:50746... [more]
EMLSAP000000013632.027e-2431.44pep:novel supercontig:LSalAtl2s:LSalAtl2s1230:1029... [more]
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BLAST of EMLSAG00000000553 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000553 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000553 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000553 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold536_size144403-snap-gene-0.131.521e-1836.00protein:Tk11926 transcript:maker-scaffold536_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s108supercontigLSalAtl2s108:507460..508614 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s108-augustus-gene-5.6
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000553 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000553EMLSAT00000000553-696400Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s108:507460..508614-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000553-683319 ID=EMLSAG00000000553-683319|Name=EMLSAG00000000553|organism=Lepeophtheirus salmonis|type=gene|length=1155bp|location=Sequence derived from alignment at LSalAtl2s108:507460..508614- (Lepeophtheirus salmonis)
ATGGAGATCCTTTTTTGGGTAGTTTCTTTCGCTCTATCTCTCAGTTCCTT
GAATTCCGTTTCTTCCCTCGGCACGACTCAGAATTTAAACATTTCCATCT
ACACCCCCTGTCTGGATGATGAAGAATGTAACAAAGAGGGCTGGTCCTGC
TTTCAGTACTTTTGTTACCCCTGGTCTGAAAAGGCAGACGCTCCAAGCCC
AAAGCACTTTGAACCCTGTCGAAGAAGTAAGGATTGCCCTGTAGGTGAGA
AGGGGGAAAAAGGAGAATGCTACAGACATCATAGTCGGAGAAGGGMCACC
TCAGGGATTTGCTTGGACGACGTGGCTGAATGCTACTCCCATGATGAATG
TGGCTCAAGAAAGTGTTGCAATGGTAACTGCTGTGATGGTGCCTATTTTG
AGGCCCTTAAAGCATTCCCGTGCACCACGAACGATGGATGTAAAGTAAGT
CCCTCCTATTATCCACACCCATTTTCATCATGTATTTTAATTGAATTTGG
CGGGAAGGCATTTACATAATATGTATATGTGCTCATATTTAAATGTGTGA
ATGGGGGTGTCATATTCTATAATAGGATGATTCCATGAAGTGATTTGTAT
ACAATTTTCTATTTATACATGATGTTTTTTCTCCTTCTTTAATTTGTGCT
AGGATTTATTACTTGGAGAGCTTTGTTGTGTGAATATCATGGGTGCATTG
GCATTCGAAACATCTACACCCAACTGGAACAAAGTCTGCTGTGACAACAA
CCTTGGGAGCCCAATAGTACAAATCCCTCAGGATATTTCTGACGAGGACC
TTCAAAAAATTGATCATCAGATCTCAAGAATGGGAGTTCTTAAAGAAGTA
AGTTTAGATGTGTTTAGAGGTCTTTCAGAAAATGTACAAATATTCTAACT
CATTTTTTTATGTCTCTCTCTCCMTATTTTTTACAGTCCATTTGCAAAGG
ACAAGAGTATGATTTTATGGAGATGCTTCCTTCCTGTGGTAATTTCACAA
CCACTACAACAACGACCACGACGACKCCTCCAACACCTAAAACCACACAG
CCAAAAGTTCAGCAATCTCAGACTCAAACGTCTGATGCATCACAGCTAGT
TTCTATTCTGTCAAATCTCTTTGCTTTGTGTTCTCTTGGAGTGCTCCTAG
CATAG
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