EMLSAG00000000585, EMLSAG00000000585-683351 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000585 vs. C. finmarchicus
Match: gi|592779516|gb|GAXK01175052.1| (TSA: Calanus finmarchicus comp2009249_c0_seq1 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 2.218e-3 Identity = 32/110 (29.09%), Postives = 48/110 (43.64%), Query Frame = 0 Query: 111 QKKRKKREDGSDTSAEPSAESSSGFACAKVVMGGNAYRSCVPKVEALKL-------KCVSGTGLSICYCHE-NNCNDASEKSVSGA--------LLLFTCSSMALLTLKR 204 Q ++ E G + A G+ CAK+ GG Y+ CVPK EA + G +CYC + N CN A K ++G+ +LLFT + ++R Sbjct: 1 QVNERRYEFGDEDGA------GQGWVCAKIPKGGRLYKDCVPKGEAPGWYEHLQEDRDHQGCNGGLCYCDDRNGCNGA--KIIAGSRNYGLFIIILLFTIHLLVK*VIQR 306
BLAST of EMLSAG00000000585 vs. C. finmarchicus
Match: gi|592948328|gb|GAXK01010225.1| (TSA: Calanus finmarchicus comp2532883_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 1.151e+0 Identity = 24/82 (29.27%), Postives = 38/82 (46.34%), Query Frame = 0 Query: 130 ESSSGFACAKVVMGGNAYRSCVPKVEALKL-------KCVSGTGLSICYCHE-NNCNDASEKSVSGALLLFTCSSM--ALLT 201 E + + C+K+ GG + CVPK +A + G ++CYC + + CN V GA+ F +M ALL+ Sbjct: 51 EGAYDWVCSKIPTGGRIKKDCVPKRDAPHWYVHLMDNRDFQGCNGAVCYCDDVDGCN-----GVPGAIDRFHVFTMLTALLS 281
BLAST of EMLSAG00000000585 vs. C. finmarchicus
Match: gi|592778886|gb|GAXK01175682.1| (TSA: Calanus finmarchicus comp3102_c3_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 1.544e+0 Identity = 18/48 (37.50%), Postives = 30/48 (62.50%), Query Frame = 0 Query: 135 FACAKVVMGGNAYRSCVPK--VEALKLKC-VSGTGLSICYCHENN-CN 178 + C K +GGN +SC+PK + LK+ C V + S+C C++++ CN Sbjct: 51 YYCIKKTLGGNTVKSCLPKSVADPLKMACGVIPSAGSVCVCNDSDLCN 194
BLAST of EMLSAG00000000585 vs. C. finmarchicus
Match: gi|592803649|gb|GAXK01150919.1| (TSA: Calanus finmarchicus comp1024997_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 4.045e+0 Identity = 20/69 (28.99%), Postives = 30/69 (43.48%), Query Frame = 0 Query: 130 ESSSGFACAKVVMGGNAYRSCVPKVEA-------LKLKCVSGTGLSICYCHENN-CNDASEKSVSGALL 190 E + + CAK+ G + CVPK EA L + G ++C+C + + CND V L Sbjct: 262 EGAIEWVCAKIPSDGRVKKDCVPKREAPGWYLHLLDNRDYQGCNGAVCFCDDRDACNDGRGVLVGNRLW 468
BLAST of EMLSAG00000000585 vs. C. finmarchicus
Match: gi|592935815|gb|GAXK01022738.1| (TSA: Calanus finmarchicus comp1074154_c0_seq3 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 4.512e+0 Identity = 15/36 (41.67%), Postives = 21/36 (58.33%), Query Frame = 0 Query: 148 RSCVPKVEALKLKCVS----GTGLSICYCHENNCND 179 R CVP++ LKC S T +S+C C +N CN+ Sbjct: 194 RDCVPEITDEDLKCDSVFEGTTKISVCNCRDNLCNE 301
BLAST of EMLSAG00000000585 vs. C. finmarchicus
Match: gi|592802388|gb|GAXK01152180.1| (TSA: Calanus finmarchicus comp4676834_c0_seq1 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 7.126e+0 Identity = 24/90 (26.67%), Postives = 35/90 (38.89%), Query Frame = 0 Query: 111 QKKRKKREDGSDTSAEPSAESSSGFACAKVVMGGNAYRSCVPKVEALKL-------KCVSGTGLSICYCHENN-CNDASEKSVSGALLLF 192 Q ++ E G D A + + CAK+ G + CVPK EA + G +CYC + CN A + +LL Sbjct: 2 QVNARRYEFGDDDGA-----NVDDWVCAKIPNDGRVKKDCVPKSEAPGWYSHLQNNRDYQGCNGMVCYCDDQEGCNTAVVLASRKEILLL 256
BLAST of EMLSAG00000000585 vs. L. salmonis peptides
Match: EMLSAP00000000585 (pep:novel supercontig:LSalAtl2s:LSalAtl2s109:162674:171177:1 gene:EMLSAG00000000585 transcript:EMLSAT00000000585 description:"maker-LSalAtl2s109-augustus-gene-1.22") HSP 1 Score: 419.083 bits (1076), Expect = 2.759e-150 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0 Query: 1 MMRPTSILFFLVSLVSIKSSHGIYCLVGKGNASEVLPTDITMDQDEIKSMMKDKGVLKYGSFISRECDNSKDSALKNIEEITKNVKKKIEDGINGLQKIGNSLSETLKLDQKKRKKREDGSDTSAEPSAESSSGFACAKVVMGGNAYRSCVPKVEALKLKCVSGTGLSICYCHENNCNDASEKSVSGALLLFTCSSMALLTLKRFTM 207 MMRPTSILFFLVSLVSIKSSHGIYCLVGKGNASEVLPTDITMDQDEIKSMMKDKGVLKYGSFISRECDNSKDSALKNIEEITKNVKKKIEDGINGLQKIGNSLSETLKLDQKKRKKREDGSDTSAEPSAESSSGFACAKVVMGGNAYRSCVPKVEALKLKCVSGTGLSICYCHENNCNDASEKSVSGALLLFTCSSMALLTLKRFTM Sbjct: 1 MMRPTSILFFLVSLVSIKSSHGIYCLVGKGNASEVLPTDITMDQDEIKSMMKDKGVLKYGSFISRECDNSKDSALKNIEEITKNVKKKIEDGINGLQKIGNSLSETLKLDQKKRKKREDGSDTSAEPSAESSSGFACAKVVMGGNAYRSCVPKVEALKLKCVSGTGLSICYCHENNCNDASEKSVSGALLLFTCSSMALLTLKRFTM 207
BLAST of EMLSAG00000000585 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold3107_size10187-processed-gene-0.0 (protein:Tk02843 transcript:snap_masked-scaffold3107_size10187-processed-gene-0.0-mRNA-1 annotation:"interferon-induced gtp-binding protein mx") HSP 1 Score: 92.8189 bits (229), Expect = 4.239e-23 Identity = 59/161 (36.65%), Postives = 88/161 (54.66%), Query Frame = 0 Query: 21 HGIYCLVGKGNASEVLPTDITMDQDEIKSMMKDKGVLKYGSFISRECDNSKDSALKNIEEITKNVKKKIEDGINGLQKIGNSLSETLKLDQKKRKKREDGSDTSAEPSAESSSGFACAKVVMGGNAYRSCVPKVEALKLKCVSGTG-LSICYCHENNCNDA 180 +G+ C VG GNAS +LP T ++ E+ DK K + C + DS L + + + KNV ++I+ + GL ++ ++ L R+KRED +ACAK+ +GG AYRSCV K+ +KL C S G L++CYCHE+NCN+A Sbjct: 122 NGLKCFVGSGNASAILPA--TAEEFEMHEKSNDKHEFKIMT-----C-GTADSELVSFDRLIKNVTEQIQSKLGGL---ADTAAKALG---GSRRKRED-------------EDYACAKIRLGGTAYRSCVNKISDIKLNCTSAVGKLALCYCHEDNCNNA 255 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000585 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000585 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 6
BLAST of EMLSAG00000000585 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000585 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000585 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000585 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000585 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s109:162674..171177+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000585-683351 ID=EMLSAG00000000585-683351|Name=EMLSAG00000000585|organism=Lepeophtheirus salmonis|type=gene|length=8504bp|location=Sequence derived from alignment at LSalAtl2s109:162674..171177+ (Lepeophtheirus salmonis)back to top Add to Basket
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