EMLSAG00000000708, EMLSAG00000000708-683474 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000708 vs. C. finmarchicus
Match: gi|592830705|gb|GAXK01126839.1| (TSA: Calanus finmarchicus comp47903_c0_seq5 transcribed RNA sequence) HSP 1 Score: 47.7506 bits (112), Expect = 9.708e-5 Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 0 Query: 174 SCPTITNRPPVSACQGAKSNCWSVGEAXWDCPNNEFCXFDGCANTC 219 SCP+++ P S C+G+ S+CWS G+ DCP+ C FDGC+NTC Sbjct: 489 SCPSLSPLP-SSDCEGSVSSCWSPGQPDGDCPDFGLCCFDGCSNTC 623 HSP 2 Score: 35.039 bits (79), Expect = 1.023e+0 Identity = 17/33 (51.52%), Postives = 21/33 (63.64%), Query Frame = 0 Query: 532 CDGEVDTCWNTGLRD-DCSLGFICCFDGCVKTC 563 C+G V +CW+ G D DC +CCFDGC TC Sbjct: 525 CEGSVSSCWSPGQPDGDCPDFGLCCFDGCSNTC 623
BLAST of EMLSAG00000000708 vs. C. finmarchicus
Match: gi|592830706|gb|GAXK01126838.1| (TSA: Calanus finmarchicus comp47903_c0_seq4 transcribed RNA sequence) HSP 1 Score: 47.7506 bits (112), Expect = 1.078e-4 Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 0 Query: 174 SCPTITNRPPVSACQGAKSNCWSVGEAXWDCPNNEFCXFDGCANTC 219 SCP+++ P S C+G+ S+CWS G+ DCP+ C FDGC+NTC Sbjct: 489 SCPSLSPLP-SSDCEGSVSSCWSPGQPDGDCPDFGLCCFDGCSNTC 623 HSP 2 Score: 35.039 bits (79), Expect = 1.081e+0 Identity = 17/33 (51.52%), Postives = 21/33 (63.64%), Query Frame = 0 Query: 532 CDGEVDTCWNTGLRD-DCSLGFICCFDGCVKTC 563 C+G V +CW+ G D DC +CCFDGC TC Sbjct: 525 CEGSVSSCWSPGQPDGDCPDFGLCCFDGCSNTC 623
BLAST of EMLSAG00000000708 vs. C. finmarchicus
Match: gi|592902589|gb|GAXK01055786.1| (TSA: Calanus finmarchicus comp3324309_c0_seq1 transcribed RNA sequence) HSP 1 Score: 45.4394 bits (106), Expect = 1.105e-4 Identity = 23/60 (38.33%), Postives = 32/60 (53.33%), Query Frame = 0 Query: 776 CPSAMKCVPKQNCDFNGVM------------------PCVNQNSGTIDVCCRDPNYKXPW 817 CPSAMKCVP+ NCD GV+ P ++ +G + VCCRDP+++ W Sbjct: 227 CPSAMKCVPRDNCDLQGVISQKKVILPTSMEILFLRAPLID-CAGDLHVCCRDPDFEYLW 403
BLAST of EMLSAG00000000708 vs. C. finmarchicus
Match: gi|592830707|gb|GAXK01126837.1| (TSA: Calanus finmarchicus comp47903_c0_seq3 transcribed RNA sequence) HSP 1 Score: 47.3654 bits (111), Expect = 1.265e-4 Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 0 Query: 174 SCPTITNRPPVSACQGAKSNCWSVGEAXWDCPNNEFCXFDGCANTC 219 SCP+++ P S C+G+ S+CWS G+ DCP+ C FDGC+NTC Sbjct: 489 SCPSLSPLP-SSDCEGSVSSCWSPGQPDGDCPDFGLCCFDGCSNTC 623 HSP 2 Score: 34.6538 bits (78), Expect = 1.207e+0 Identity = 17/33 (51.52%), Postives = 21/33 (63.64%), Query Frame = 0 Query: 532 CDGEVDTCWNTGLRD-DCSLGFICCFDGCVKTC 563 C+G V +CW+ G D DC +CCFDGC TC Sbjct: 525 CEGSVSSCWSPGQPDGDCPDFGLCCFDGCSNTC 623
BLAST of EMLSAG00000000708 vs. C. finmarchicus
Match: gi|592830708|gb|GAXK01126836.1| (TSA: Calanus finmarchicus comp47903_c0_seq2 transcribed RNA sequence) HSP 1 Score: 47.3654 bits (111), Expect = 1.268e-4 Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 0 Query: 174 SCPTITNRPPVSACQGAKSNCWSVGEAXWDCPNNEFCXFDGCANTC 219 SCP+++ P S C+G+ S+CWS G+ DCP+ C FDGC+NTC Sbjct: 489 SCPSLSPLP-SSDCEGSVSSCWSPGQPDGDCPDFGLCCFDGCSNTC 623 HSP 2 Score: 34.6538 bits (78), Expect = 1.209e+0 Identity = 17/33 (51.52%), Postives = 21/33 (63.64%), Query Frame = 0 Query: 532 CDGEVDTCWNTGLRD-DCSLGFICCFDGCVKTC 563 C+G V +CW+ G D DC +CCFDGC TC Sbjct: 525 CEGSVSSCWSPGQPDGDCPDFGLCCFDGCSNTC 623
BLAST of EMLSAG00000000708 vs. L. salmonis peptides
Match: EMLSAP00000000708 (pep:novel supercontig:LSalAtl2s:LSalAtl2s110:876596:884706:-1 gene:EMLSAG00000000708 transcript:EMLSAT00000000708 description:"maker-LSalAtl2s110-augustus-gene-8.13") HSP 1 Score: 1558.12 bits (4033), Expect = 0.000e+0 Identity = 821/821 (100.00%), Postives = 821/821 (100.00%), Query Frame = 0 Query: 1 MKCLTFTSAICLLIAPALANEQYWWQDNPNVFSQGGGGSPSNGGNSFGGSRPQSSSFNNNNNNNGPSSDNSLSHELLTECPAGTRCTVDYYCDINAVISSVPVKLTKEDLRKRGHMIPCWHEESDKFEICCSXATGFASSSSPSFSSSPSFSSSNPSIVSAKLTLPNRTLAPGSCPTITNRPPVSACQGAKSNCWSVGEAXWDCPNNEFCXFDGCANTCYFGPASGGESSPSGSNQNSNQQGGRIPRKPNGNNNRGSSSQSSNSFSGPSGQPGSNNEGFPSNSGFLTGNGGHSGKPGSSNNNGSPSNSGFQPGSGGHSGTPGSNHNNRGSPSSSGFQPGNGGHSGKNNRGSSSQNSNSSPIPSGHPGNNNRGSSSSSGFQPGSGGHSSKPGFSSGSNNEGFPSNSGFQPGNGEHFNNNNRGSSNQPENNGNTGQRTDDSPVVFPGSSPNKNNGFPSSTNNQPSSGSYSPSTGSQNSPSVSVSCNDKRKCGNVQVVVSGSGNDPPPRPTPRPSGNVIRNSNCPNNPSPPTGICDGEVDTCWNTGLRDDCSLGFICCFDGCVKTCYNGTDFLRHLDSPNLIRGTGSNNFQSPSKQQQQSPSGFPAPTFAASQGNPGQPRPSSNNEFNSPNNNRQQPSGSFPSQNHNGQLQPPASGFSPPNQNRQPSQPNNGYLSPGSGNNNRQPSRPNNNGFPSSNNNNRQPSGTNNGVSSPSRGQPGNGFPNPNKFGQNPQSGSNNRFPSSGNNNNIGGQPGRPTGQRPSGSNNNFANXATKPYKSCPSAMKCVPKQNCDFNGVMPCVNQNSGTIDVCCRDPNYKXPWPQNN 821 MKCLTFTSAICLLIAPALANEQYWWQDNPNVFSQGGGGSPSNGGNSFGGSRPQSSSFNNNNNNNGPSSDNSLSHELLTECPAGTRCTVDYYCDINAVISSVPVKLTKEDLRKRGHMIPCWHEESDKFEICCSXATGFASSSSPSFSSSPSFSSSNPSIVSAKLTLPNRTLAPGSCPTITNRPPVSACQGAKSNCWSVGEAXWDCPNNEFCXFDGCANTCYFGPASGGESSPSGSNQNSNQQGGRIPRKPNGNNNRGSSSQSSNSFSGPSGQPGSNNEGFPSNSGFLTGNGGHSGKPGSSNNNGSPSNSGFQPGSGGHSGTPGSNHNNRGSPSSSGFQPGNGGHSGKNNRGSSSQNSNSSPIPSGHPGNNNRGSSSSSGFQPGSGGHSSKPGFSSGSNNEGFPSNSGFQPGNGEHFNNNNRGSSNQPENNGNTGQRTDDSPVVFPGSSPNKNNGFPSSTNNQPSSGSYSPSTGSQNSPSVSVSCNDKRKCGNVQVVVSGSGNDPPPRPTPRPSGNVIRNSNCPNNPSPPTGICDGEVDTCWNTGLRDDCSLGFICCFDGCVKTCYNGTDFLRHLDSPNLIRGTGSNNFQSPSKQQQQSPSGFPAPTFAASQGNPGQPRPSSNNEFNSPNNNRQQPSGSFPSQNHNGQLQPPASGFSPPNQNRQPSQPNNGYLSPGSGNNNRQPSRPNNNGFPSSNNNNRQPSGTNNGVSSPSRGQPGNGFPNPNKFGQNPQSGSNNRFPSSGNNNNIGGQPGRPTGQRPSGSNNNFANXATKPYKSCPSAMKCVPKQNCDFNGVMPCVNQNSGTIDVCCRDPNYKXPWPQNN Sbjct: 1 MKCLTFTSAICLLIAPALANEQYWWQDNPNVFSQGGGGSPSNGGNSFGGSRPQSSSFNNNNNNNGPSSDNSLSHELLTECPAGTRCTVDYYCDINAVISSVPVKLTKEDLRKRGHMIPCWHEESDKFEICCSXATGFASSSSPSFSSSPSFSSSNPSIVSAKLTLPNRTLAPGSCPTITNRPPVSACQGAKSNCWSVGEAXWDCPNNEFCXFDGCANTCYFGPASGGESSPSGSNQNSNQQGGRIPRKPNGNNNRGSSSQSSNSFSGPSGQPGSNNEGFPSNSGFLTGNGGHSGKPGSSNNNGSPSNSGFQPGSGGHSGTPGSNHNNRGSPSSSGFQPGNGGHSGKNNRGSSSQNSNSSPIPSGHPGNNNRGSSSSSGFQPGSGGHSSKPGFSSGSNNEGFPSNSGFQPGNGEHFNNNNRGSSNQPENNGNTGQRTDDSPVVFPGSSPNKNNGFPSSTNNQPSSGSYSPSTGSQNSPSVSVSCNDKRKCGNVQVVVSGSGNDPPPRPTPRPSGNVIRNSNCPNNPSPPTGICDGEVDTCWNTGLRDDCSLGFICCFDGCVKTCYNGTDFLRHLDSPNLIRGTGSNNFQSPSKQQQQSPSGFPAPTFAASQGNPGQPRPSSNNEFNSPNNNRQQPSGSFPSQNHNGQLQPPASGFSPPNQNRQPSQPNNGYLSPGSGNNNRQPSRPNNNGFPSSNNNNRQPSGTNNGVSSPSRGQPGNGFPNPNKFGQNPQSGSNNRFPSSGNNNNIGGQPGRPTGQRPSGSNNNFANXATKPYKSCPSAMKCVPKQNCDFNGVMPCVNQNSGTIDVCCRDPNYKXPWPQNN 821
BLAST of EMLSAG00000000708 vs. L. salmonis peptides
Match: EMLSAP00000012204 (pep:novel supercontig:LSalAtl2s:LSalAtl2s884:108860:111527:1 gene:EMLSAG00000012204 transcript:EMLSAT00000012204 description:"maker-LSalAtl2s884-augustus-gene-1.10") HSP 1 Score: 108.997 bits (271), Expect = 3.405e-25 Identity = 66/185 (35.68%), Postives = 91/185 (49.19%), Query Frame = 0 Query: 56 SFNNNNNNNGPSSDNSLSHELLTECPAGTRCTVDYYCDINAVISSVPVKLTKEDLRKRGHMIPCWHEESDKFEICCSXATGFASSSSPSFSSSPSFSSSNPSIVSAKLTLPNRTLAP-GSCPTITNRPPVSACQGAKSNCWSVGEAXWDCPNNEFCXFDGCANTCY--FGPASGGESSPSGSNQN 237 +F N +NG +S + E+ TEC AG+ CTVD +CD+N ISSVP+ LT+E+ RG +IPCWH E+ + ++CC NP K + + L +CP + S+C S C SVG+ C NNE C +DGCAN C P E+SPS + N Sbjct: 47 AFQYTNFHNGSASYSP--PEIRTECQAGSYCTVDMFCDVNVTISSVPLNLTEEEKDDRGELIPCWHVETQEIQVCC-----------------------NPPSDEPKENVKSEDLKDFATCPRVPRAFSESSCSDVASTCASVGKPDQSCLNNELCCYDGCANRCISDLSPEPVEETSPSEAVSN 206 HSP 2 Score: 61.2326 bits (147), Expect = 5.644e-10 Identity = 28/63 (44.44%), Postives = 37/63 (58.73%), Query Frame = 0 Query: 776 CPSAMKCVPKQNCDFNGV-------------------MPCVNQNSGTIDVCCRDPNYKXPWPQ 819 CPSA+ CVPK+NCDFNGV +PC++ +G+ +VCCRDPNY P+ Q Sbjct: 424 CPSALSCVPKKNCDFNGVIVSHVVSTSPEFDTVRVPLLPCIHPQTGSSNVCCRDPNYVDPYSQ 486
BLAST of EMLSAG00000000708 vs. Select Arthropod Genomes
Match: EEB19342.1 (trypsin, putative [Pediculus humanus corporis]) HSP 1 Score: 59.3066 bits (142), Expect = 5.375e-8 Identity = 26/70 (37.14%), Postives = 35/70 (50.00%), Query Frame = 0 Query: 770 TKPYKSCPSAMKCVPKQNCDFNGVM-------------------PCVNQNSGTIDVCCRDPNYKXPWPQN 820 T P+ CP+A+KCV + C ++G+M C N +G I CCRDPNYK PWP + Sbjct: 602 TTPHVGCPAALKCVEESYCTWDGIMSETPVTLTREEAENKVPLSDCQNIETGVIGKCCRDPNYKDPWPSD 671
BLAST of EMLSAG00000000708 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold230_size244653-snap-gene-0.16 (protein:Tk08243 transcript:maker-scaffold230_size244653-snap-gene-0.16-mRNA-1 annotation:"serine proteinase stubble-like") HSP 1 Score: 133.265 bits (334), Expect = 3.396e-32 Identity = 83/222 (37.39%), Postives = 117/222 (52.70%), Query Frame = 0 Query: 76 LLTECPAGTRCTVDYYCDINAVISSVPVKLTKEDLRKRGHMIPCWHEESDKFEICCSXAT----------GFASSSSPSFS---SSPSFS----SSNPSIVSAKLTLPNRTLAPGSCPTITNRPPVSACQGAKSNCWSVGEAXWDCPNNEFCXFDGCANTCYFGPASGGESSPSGSNQNSN-----QQGGRIPRKPNGNNNRGSSSQSSNSFSGPSGQPGSN 275 + TECPAGT+C D++CD NA++ + V L+ R RG+++PC ++++ +F++CCS A+ + PSF + PSF SS + + N ++ GSCP I P +++C G KSNCWSVG+A DCPNN C FDGC N CYFG +G P + Q SN QQ P NN + Q SN+ P+ QP N Sbjct: 108 VQTECPAGTKCVGDFFCDENAIMVNYRVDLSPAQKRNRGNLLPCMNQQTGQFDVCCSTASPGSQGNNRPSSQGQQNQPSFQGQQNQPSFQGQSGSSQNNNNPGNNQISN-SIPQGSCPNIGALPDIASCNGMKSNCWSVGQADVDCPNNALCCFDGCRNACYFGAGNGNAPPPRPAPQQSNNRPAPQQSNNRPAPQQSNNRPAPAPQQSNNRPAPAPQPSFN 328 HSP 2 Score: 78.5666 bits (192), Expect = 3.788e-15 Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 0 Query: 520 NCPNNPSPPTGICDGEVDTCWNTGLRDDCSLGFICCFDGCVKTCYNGT--DFLRH 572 +CPN P+ C E DTCWNTG RDDC+ GF+CC+DGC KTC N DFLRH Sbjct: 398 DCPNMSPLPSADCAAERDTCWNTGKRDDCARGFLCCYDGCSKTCLNTQTGDFLRH 452
BLAST of EMLSAG00000000708 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold120_size336265-snap-gene-0.6 (protein:Tk08782 transcript:maker-scaffold120_size336265-snap-gene-0.6-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 50.447 bits (119), Expect = 3.496e-7 Identity = 24/43 (55.81%), Postives = 27/43 (62.79%), Query Frame = 0 Query: 187 CQGAKSNCWSVGEAXWDCPNNEFCXFDGCANTCYFGPASGGES 229 C G SNCWS G+ DCPN C FDGCANTC GP + +S Sbjct: 91 CAGTVSNCWSPGQGDTDCPNFGLCCFDGCANTCVDGPTAISQS 133 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000708 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000708 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000000708 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000000708 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000708 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 1
BLAST of EMLSAG00000000708 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000708 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s110:876596..884706- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000708-683474 ID=EMLSAG00000000708-683474|Name=EMLSAG00000000708|organism=Lepeophtheirus salmonis|type=gene|length=8111bp|location=Sequence derived from alignment at LSalAtl2s110:876596..884706- (Lepeophtheirus salmonis)back to top Add to Basket
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