EMLSAG00000000730, EMLSAG00000000730-683496 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000730
Unique NameEMLSAG00000000730-683496
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000730 vs. C. finmarchicus
Match: gi|592766463|gb|GAXK01188105.1| (TSA: Calanus finmarchicus comp10792_c3_seq3 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 9.231e-2
Identity = 25/99 (25.25%), Postives = 43/99 (43.43%), Query Frame = 0 
Query:   44 ATVIVVCNSVSIPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKW-EKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGYC 141
             T + +  +V  PVE +   C LCE++   ++  + D     +I   ++  C I     PK  E +C  FV+      ++ L   +  P+  C  LG C
Sbjct:  885 TTEVALVETVPTPVEVEDSTCILCEYVVTTLDGMLTDKTNEAQIKAALESLCSIL----PKSIEAQCDNFVETYTDIIIDMLTKDVT-PEMICSNLGLC 1166

HSP 2 Score: 29.6462 bits (65), Expect = 4.256e+0
Identity = 20/74 (27.03%), Postives = 33/74 (44.59%), Query Frame = 0 
Query:   63 NCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRP-KWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTC 135
             C++CEF    V+  + D   V +I   ++  C     Y P     KC  FVD   +  ++ L+   + PK+ C
Sbjct:  321 GCEMCEFAMSIVDEHLKDSNTVDEIERMVQFICS----YLPGTIADKCEEFVDEYGQKVMDALVDDELKPKEVC 530
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BLAST of EMLSAG00000000730 vs. C. finmarchicus
Match: gi|592766465|gb|GAXK01188103.1| (TSA: Calanus finmarchicus comp10792_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 9.661e-2
Identity = 25/99 (25.25%), Postives = 43/99 (43.43%), Query Frame = 0 
Query:   44 ATVIVVCNSVSIPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKW-EKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGYC 141
             T + +  +V  PVE +   C LCE++   ++  + D     +I   ++  C I     PK  E +C  FV+      ++ L   +  P+  C  LG C
Sbjct:  885 TTEVALVETVPTPVEVEDSTCILCEYVVTTLDGMLTDKTNEAQIKAALESLCSIL----PKSIEAQCDNFVETYTDIIIDMLTKDVT-PEMICSNLGLC 1166

HSP 2 Score: 29.6462 bits (65), Expect = 4.607e+0
Identity = 20/74 (27.03%), Postives = 33/74 (44.59%), Query Frame = 0 
Query:   63 NCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRP-KWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTC 135
             C++CEF    V+  + D   V +I   ++  C     Y P     KC  FVD   +  ++ L+   + PK+ C
Sbjct:  321 GCEMCEFAMSIVDEHLKDSNTVDEIERMVQFICS----YLPGTIADKCEEFVDEYGQKVMDALVDDELKPKEVC 530
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BLAST of EMLSAG00000000730 vs. C. finmarchicus
Match: gi|592766461|gb|GAXK01188107.1| (TSA: Calanus finmarchicus comp10792_c6_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 9.943e-2
Identity = 25/99 (25.25%), Postives = 44/99 (44.44%), Query Frame = 0 
Query:   44 ATVIVVCNSVSIPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKW-EKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGYC 141
             T + +  +V  PVE +   C LCE++   +++ + D     +I   ++  C I     PK  E +C  FV+      ++ L   +  P+  C  LG C
Sbjct: 1989 TTEVALVETVPTPVEVEDSTCILCEYVVTTLDSMLEDKTNEAQIKAALESLCSIL----PKSIEAQCDNFVETYTDIIIDMLTKDVT-PEMICSNLGLC 2270

HSP 2 Score: 29.6462 bits (65), Expect = 4.237e+0
Identity = 20/73 (27.40%), Postives = 33/73 (45.21%), Query Frame = 0 
Query:   64 CKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRP-KWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTC 135
            C++CEF    V+  + D   V +I   ++  C     Y P     KC  FVD   +  ++ L+   + PK+ C
Sbjct: 2628 CEMCEFAMSIVDEHLKDSNTVDEIERMVQFICS----YLPGTIADKCEEFVDEYGQKVMDALVDDELKPKEVC 2834
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BLAST of EMLSAG00000000730 vs. C. finmarchicus
Match: gi|592770443|gb|GAXK01184125.1| (TSA: Calanus finmarchicus comp134519_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 2.577e-1
Identity = 24/105 (22.86%), Postives = 44/105 (41.90%), Query Frame = 0 
Query:   37 MKFVLMFATVIVVCNSVSIPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGYC 141
            M+ +L FA  +    S     E     C LC  +   +   I D   + +I++ ++  CK         E  C   +++ +   +EG++   + P Q C L+G C
Sbjct:   34 MRALLTFAACLASL-SFGSTAEVSSATCDLCIAVVTGLEDYITDDTTMDQILEKVEEICKTLGAL----EGLCIQTIESYLPGIIEGILDGQLNPNQICALIGLC 333
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BLAST of EMLSAG00000000730 vs. C. finmarchicus
Match: gi|592843588|gb|GAXK01113956.1| (TSA: Calanus finmarchicus comp5394192_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 1.251e+0
Identity = 13/32 (40.62%), Postives = 21/32 (65.62%), Query Frame = 0 
Query:   33 KLYKMKFVLMFATVIVVCNSVSIPVEEKLDNC 64
            +LY MK++ +FA ++V C + S+P   K D C
Sbjct:  445 RLYTMKYLAIFALLVVACVASSVPSRSK-DRC 537
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BLAST of EMLSAG00000000730 vs. C. finmarchicus
Match: gi|592779257|gb|GAXK01175311.1| (TSA: Calanus finmarchicus comp3269_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.519e+0
Identity = 16/57 (28.07%), Postives = 26/57 (45.61%), Query Frame = 0 
Query:   86 KIVDTMKIECKIFFMYRPKWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTCR-LLGYC 141
            +I+D +K  C       P +E  C   V + +   +EG +   + P Q C  L+G C
Sbjct:   59 EIIDFVKQICATLGAIIPGFEATCNLLVGSQLPDIIEGFVNDNMDPTQVCTDLMGAC 229
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BLAST of EMLSAG00000000730 vs. C. finmarchicus
Match: gi|592762225|gb|GAXK01192188.1| (TSA: Calanus finmarchicus comp40403_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 1.607e+0
Identity = 20/86 (23.26%), Postives = 37/86 (43.02%), Query Frame = 0 
Query:   56 PVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGYC 141
            P E K+  C LC+ I   ++  + DG     I+D +   C          +  C   + + +   +E L+ + + P++ C LL  C
Sbjct:  117 PAEPKMGACDLCKQIVTAIDEFLTDGSTEQDIIDYVNGICDNLPF---PLDTVCKTTLADKIGEIIENLVNNNLQPQEVCELLKLC 365
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BLAST of EMLSAG00000000730 vs. C. finmarchicus
Match: gi|592766462|gb|GAXK01188106.1| (TSA: Calanus finmarchicus comp10792_c3_seq4 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 2.564e+0
Identity = 19/73 (26.03%), Postives = 33/73 (45.21%), Query Frame = 0 
Query:   44 ATVIVVCNSVSIPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKW-EKKCYAFVDN 115
             T + +  +V  PVE +   C LCE++   ++  + D     +I   ++  C I     PK  E +C  FV+ 
Sbjct:   39 TTEVALVETVPTPVEVEDSTCILCEYVVTTLDGMLTDKTNEAQIKAALESLCSIL----PKSIEAQCDNFVET 245
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BLAST of EMLSAG00000000730 vs. C. finmarchicus
Match: gi|592766464|gb|GAXK01188104.1| (TSA: Calanus finmarchicus comp10792_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 3.268e+0
Identity = 19/73 (26.03%), Postives = 33/73 (45.21%), Query Frame = 0 
Query:   44 ATVIVVCNSVSIPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKW-EKKCYAFVDN 115
             T + +  +V  PVE +   C LCE++   ++  + D     +I   ++  C I     PK  E +C  FV+ 
Sbjct:   39 TTEVALVETVPTPVEVEDSTCILCEYVVTTLDGMLTDKTNEAQIKAALESLCSIL----PKSIEAQCDNFVET 245
[Close]
BLAST of EMLSAG00000000730 vs. C. finmarchicus
Match: gi|592785566|gb|GAXK01169002.1| (TSA: Calanus finmarchicus comp992_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 3.976e+0
Identity = 19/79 (24.05%), Postives = 30/79 (37.97%), Query Frame = 0 
Query:   64 CKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTCR-LLGYC 141
            C +C  I   ++  I      G+I+D +K  C         +E  C   V   +   +EG +   + P   C  L G C
Sbjct:  119 CDICMDIMTDLDNFITSDTTEGEIIDFVKQICAALGAIIDGFEATCNLLVATQLPAIIEGFVNDNMDPTSVCTDLFGAC 355
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BLAST of EMLSAG00000000730 vs. L. salmonis peptides
Match: EMLSAP00000000730 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1117:123079:123572:-1 gene:EMLSAG00000000730 transcript:EMLSAT00000000730 description:"maker-LSalAtl2s1117-augustus-gene-1.22")

HSP 1 Score: 293.508 bits (750), Expect = 8.287e-103
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 
Query:    1 MIRNDSDLTIKTQENDTWSTKEFNSRRRQQDSKLYKMKFVLMFATVIVVCNSVSIPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGYC 141
            MIRNDSDLTIKTQENDTWSTKEFNSRRRQQDSKLYKMKFVLMFATVIVVCNSVSIPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGYC
Sbjct:    1 MIRNDSDLTIKTQENDTWSTKEFNSRRRQQDSKLYKMKFVLMFATVIVVCNSVSIPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGYC 141
[Close]
BLAST of EMLSAG00000000730 vs. L. salmonis peptides
Match: EMLSAP00000011667 (pep:novel supercontig:LSalAtl2s:LSalAtl2s80:923664:924312:1 gene:EMLSAG00000011667 transcript:EMLSAT00000011667 description:"maker-LSalAtl2s80-augustus-gene-9.25")

HSP 1 Score: 197.208 bits (500), Expect = 1.527e-65
Identity = 92/105 (87.62%), Postives = 99/105 (94.29%), Query Frame = 0 
Query:   37 MKFVLMFATVIVVCNSVSIPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGYC 141
            MKF LMFAT+IVVCNSVS+PVEEKLDNCKLC+FIFKK+N AIADGLGV KIVDT+KIECKIFFMYRPKWEKKCYAFV+NVVKPQLEG MGHI PPK+TCR LGYC
Sbjct:    1 MKFFLMFATLIVVCNSVSLPVEEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGYC 105
[Close]
BLAST of EMLSAG00000000730 vs. L. salmonis peptides
Match: EMLSAP00000000723 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1115:1254:1670:-1 gene:EMLSAG00000000723 transcript:EMLSAT00000000723 description:"maker-LSalAtl2s1115-snap-gene-0.4")

HSP 1 Score: 123.635 bits (309), Expect = 1.078e-36
Identity = 60/106 (56.60%), Postives = 76/106 (71.70%), Query Frame = 0 
Query:   37 MKFVLMFATVIVVCNSVS--IPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGY 140
            MK  L+ AT+  VC++ S  +PVE+K D+ KLC  IFKKVN  I     +  I+ T+ +EC I FM   KW+K+C+AFVDNVVKPQLEG++GH VPPKQTCR LGY
Sbjct:    1 MKLFLIIATLFAVCSAASLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCRALGY 106
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000730 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000730 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 11
Match NameE-valueIdentityDescription
gi|592766463|gb|GAXK01188105.1|9.231e-225.25TSA: Calanus finmarchicus comp10792_c3_seq3 transc... [more]
gi|592766465|gb|GAXK01188103.1|9.661e-225.25TSA: Calanus finmarchicus comp10792_c3_seq1 transc... [more]
gi|592766461|gb|GAXK01188107.1|9.943e-225.25TSA: Calanus finmarchicus comp10792_c6_seq1 transc... [more]
gi|592770443|gb|GAXK01184125.1|2.577e-122.86TSA: Calanus finmarchicus comp134519_c2_seq1 trans... [more]
gi|592843588|gb|GAXK01113956.1|1.251e+040.63TSA: Calanus finmarchicus comp5394192_c0_seq1 tran... [more]
gi|592779257|gb|GAXK01175311.1|1.519e+028.07TSA: Calanus finmarchicus comp3269_c3_seq2 transcr... [more]
gi|592762225|gb|GAXK01192188.1|1.607e+023.26TSA: Calanus finmarchicus comp40403_c2_seq1 transc... [more]
gi|592766462|gb|GAXK01188106.1|2.564e+026.03TSA: Calanus finmarchicus comp10792_c3_seq4 transc... [more]
gi|592766464|gb|GAXK01188104.1|3.268e+026.03TSA: Calanus finmarchicus comp10792_c3_seq2 transc... [more]
gi|592785566|gb|GAXK01169002.1|3.976e+024.05TSA: Calanus finmarchicus comp992_c0_seq1 transcri... [more]

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BLAST of EMLSAG00000000730 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000007308.287e-103100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1117:1230... [more]
EMLSAP000000116671.527e-6587.62pep:novel supercontig:LSalAtl2s:LSalAtl2s80:923664... [more]
EMLSAP000000007231.078e-3656.60pep:novel supercontig:LSalAtl2s:LSalAtl2s1115:1254... [more]
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BLAST of EMLSAG00000000730 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000730 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000730 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000730 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1117supercontigLSalAtl2s1117:123079..123572 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1117-augustus-gene-1.22
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000730 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000730EMLSAT00000000730-696577Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1117:123079..123572-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000730-683496 ID=EMLSAG00000000730-683496|Name=EMLSAG00000000730|organism=Lepeophtheirus salmonis|type=gene|length=494bp|location=Sequence derived from alignment at LSalAtl2s1117:123079..123572- (Lepeophtheirus salmonis)
ATGATAAGAAATGATTCTGATTTAACTATAAAAACACAAGAAAACGATAC
ATGGAGTACAAAAGAATTTAATTCTCGAAGAAGACAACAAGACTCTAAAT
TATACAAAATGAAGTTCGTTTTGATGTTTGCAACTGTTATTGTTGTTTGC
AACTCTGTTTCCATCCCAGTTGAGGAAAAGTTGGACAACTGTAAGCTCTG
CGAATTCATTTTTAAGAAGGTGAACGCTGCAATTGCCGATGGATTAGGCG
TGGGTAAAATTGTCGATACCATGAAAATCGTAGGATATACATACTTTATC
AACTATCTATATTTATCCAACCTCTCTGTTACATTTTAATTTTGCAGGAA
TGTAAGATCTTCTTTATGTATCGTCCTAAATGGGAGAAGAAATGTTATGC
ATTTGTAGATAACGTTGTGAAACCACAGCTTGAGGGCCTCATGGGACATA
TTGTTCCTCCCAAACAGACTTGTAGACTCCTTGGCTATTGTTAA
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