EMLSAG00000011667, EMLSAG00000011667-694433 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000011667
Unique NameEMLSAG00000011667-694433
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000011667 vs. C. finmarchicus
Match: gi|592934592|gb|GAXK01023961.1| (TSA: Calanus finmarchicus comp244608_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.039 bits (79), Expect = 1.624e-2
Identity = 20/88 (22.73%), Postives = 39/88 (44.32%), Query Frame = 0 
Query:   19 LPVEEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIA-PPKRTCRFLGYC 105
            L  E+  + C LC+ I + ++  +    G+D+I   L   C +     P  E+ C A +  +    +   +  +   P+  C +LG+C
Sbjct:  201 LSAEKDDNGCLLCELIVQVVDFQVESEAGIDQIRSALFGVCDLL---EPGMEEDCKAIIYQLDLQTIIDIVVELGLRPRAVCEYLGFC 455
[Close]
BLAST of EMLSAG00000011667 vs. C. finmarchicus
Match: gi|592779257|gb|GAXK01175311.1| (TSA: Calanus finmarchicus comp3269_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 7.973e-2
Identity = 19/76 (25.00%), Postives = 31/76 (40.79%), Query Frame = 0 
Query:   31 CKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCR-FLGYC 105
            C  I   ++N I       +I+D +K  C       P +E  C   V + +   +EGF+     P + C   +G C
Sbjct:    2 CMDIMTDLDNFITSESTEQEIIDFVKQICATLGAIIPGFEATCNLLVGSQLPDIIEGFVNDNMDPTQVCTDLMGAC 229
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BLAST of EMLSAG00000011667 vs. C. finmarchicus
Match: gi|592770443|gb|GAXK01184125.1| (TSA: Calanus finmarchicus comp134519_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 1.412e-1
Identity = 23/105 (21.90%), Postives = 41/105 (39.05%), Query Frame = 0 
Query:    1 MKFFLMFATLIVVCNSVSLPVEEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGYC 105
            M+  L FA  +    S     E     C LC  +   + + I D   +D+I++ ++  CK         E  C   + + +   +EG +     P + C  +G C
Sbjct:   34 MRALLTFAACLASL-SFGSTAEVSSATCDLCIAVVTGLEDYITDDTTMDQILEKVEEICKTLGAL----EGLCIQTIESYLPGIIEGILDGQLNPNQICALIGLC 333
[Close]
BLAST of EMLSAG00000011667 vs. C. finmarchicus
Match: gi|592779258|gb|GAXK01175310.1| (TSA: Calanus finmarchicus comp3269_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.744e-1
Identity = 20/76 (26.32%), Postives = 31/76 (40.79%), Query Frame = 0 
Query:   31 CKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFL-GYC 105
            C  I   ++N I       +I+D +K  C       P +E  C   V + +   +EGF+     P + C  L G C
Sbjct:    2 CMDIMTDLDNFITSESTEQEIIDFVKQICATLGAIIPGFEATCNLLVGSQLPDIIEGFVNDNLNPTQVCTDLFGAC 229
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BLAST of EMLSAG00000011667 vs. C. finmarchicus
Match: gi|592785566|gb|GAXK01169002.1| (TSA: Calanus finmarchicus comp992_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 4.011e-1
Identity = 20/79 (25.32%), Postives = 30/79 (37.97%), Query Frame = 0 
Query:   28 CKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFL-GYC 105
            C +C  I   ++N I       +I+D +K  C         +E  C   V   +   +EGF+     P   C  L G C
Sbjct:  119 CDICMDIMTDLDNFITSDTTEGEIIDFVKQICAALGAIIDGFEATCNLLVATQLPAIIEGFVNDNMDPTSVCTDLFGAC 355
[Close]
BLAST of EMLSAG00000011667 vs. C. finmarchicus
Match: gi|592762225|gb|GAXK01192188.1| (TSA: Calanus finmarchicus comp40403_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 8.125e-1
Identity = 20/86 (23.26%), Postives = 33/86 (38.37%), Query Frame = 0 
Query:   20 PVEEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGYC 105
            P E K+  C LCK I   I+  + DG     I+D +   C          +  C   + + +   +E  + +   P+  C  L  C
Sbjct:  117 PAEPKMGACDLCKQIVTAIDEFLTDGSTEQDIIDYVNGICDNLPF---PLDTVCKTTLADKIGEIIENLVNNNLQPQEVCELLKLC 365
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BLAST of EMLSAG00000011667 vs. C. finmarchicus
Match: gi|592766461|gb|GAXK01188107.1| (TSA: Calanus finmarchicus comp10792_c6_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.015e+0
Identity = 24/98 (24.49%), Postives = 42/98 (42.86%), Query Frame = 0 
Query:    9 TLIVVCNSVSLPVEEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPK-WEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGYC 105
            T + +  +V  PVE +   C LC+++   +++ + D     +I   L+  C I     PK  E +C  FV       ++     +  P+  C  LG C
Sbjct: 1992 TEVALVETVPTPVEVEDSTCILCEYVVTTLDSMLEDKTNEAQIKAALESLCSIL----PKSIEAQCDNFVETYTDIIIDMLTKDVT-PEMICSNLGLC 2270
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BLAST of EMLSAG00000011667 vs. C. finmarchicus
Match: gi|592766463|gb|GAXK01188105.1| (TSA: Calanus finmarchicus comp10792_c3_seq3 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.048e+0
Identity = 24/98 (24.49%), Postives = 41/98 (41.84%), Query Frame = 0 
Query:    9 TLIVVCNSVSLPVEEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPK-WEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGYC 105
            T + +  +V  PVE +   C LC+++   ++  + D     +I   L+  C I     PK  E +C  FV       ++     +  P+  C  LG C
Sbjct:  885 TEVALVETVPTPVEVEDSTCILCEYVVTTLDGMLTDKTNEAQIKAALESLCSIL----PKSIEAQCDNFVETYTDIIIDMLTKDVT-PEMICSNLGLC 1163
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BLAST of EMLSAG00000011667 vs. C. finmarchicus
Match: gi|592766465|gb|GAXK01188103.1| (TSA: Calanus finmarchicus comp10792_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.086e+0
Identity = 24/98 (24.49%), Postives = 41/98 (41.84%), Query Frame = 0 
Query:    9 TLIVVCNSVSLPVEEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPK-WEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGYC 105
            T + +  +V  PVE +   C LC+++   ++  + D     +I   L+  C I     PK  E +C  FV       ++     +  P+  C  LG C
Sbjct:  885 TEVALVETVPTPVEVEDSTCILCEYVVTTLDGMLTDKTNEAQIKAALESLCSIL----PKSIEAQCDNFVETYTDIIIDMLTKDVT-PEMICSNLGLC 1163
[Close]
BLAST of EMLSAG00000011667 vs. C. finmarchicus
Match: gi|592766462|gb|GAXK01188106.1| (TSA: Calanus finmarchicus comp10792_c3_seq4 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 5.178e+0
Identity = 19/73 (26.03%), Postives = 32/73 (43.84%), Query Frame = 0 
Query:    8 ATLIVVCNSVSLPVEEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKW-EKKCYAFVNN 79
             T + +  +V  PVE +   C LC+++   ++  + D     +I   L+  C I     PK  E +C  FV  
Sbjct:   39 TTEVALVETVPTPVEVEDSTCILCEYVVTTLDGMLTDKTNEAQIKAALESLCSIL----PKSIEAQCDNFVET 245
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BLAST of EMLSAG00000011667 vs. L. salmonis peptides
Match: EMLSAP00000011667 (pep:novel supercontig:LSalAtl2s:LSalAtl2s80:923664:924312:1 gene:EMLSAG00000011667 transcript:EMLSAT00000011667 description:"maker-LSalAtl2s80-augustus-gene-9.25")

HSP 1 Score: 214.542 bits (545), Expect = 6.280e-73
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 
Query:    1 MKFFLMFATLIVVCNSVSLPVEEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGYC 105
            MKFFLMFATLIVVCNSVSLPVEEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGYC
Sbjct:    1 MKFFLMFATLIVVCNSVSLPVEEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGYC 105
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BLAST of EMLSAG00000011667 vs. L. salmonis peptides
Match: EMLSAP00000000730 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1117:123079:123572:-1 gene:EMLSAG00000000730 transcript:EMLSAT00000000730 description:"maker-LSalAtl2s1117-augustus-gene-1.22")

HSP 1 Score: 197.208 bits (500), Expect = 1.137e-65
Identity = 92/105 (87.62%), Postives = 99/105 (94.29%), Query Frame = 0 
Query:    1 MKFFLMFATLIVVCNSVSLPVEEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGYC 105
            MKF LMFAT+IVVCNSVS+PVEEKLDNCKLC+FIFKK+N AIADGLGV KIVDT+KIECKIFFMYRPKWEKKCYAFV+NVVKPQLEG MGHI PPK+TCR LGYC
Sbjct:   37 MKFVLMFATVIVVCNSVSIPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGYC 141
[Close]
BLAST of EMLSAG00000011667 vs. L. salmonis peptides
Match: EMLSAP00000000723 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1115:1254:1670:-1 gene:EMLSAG00000000723 transcript:EMLSAT00000000723 description:"maker-LSalAtl2s1115-snap-gene-0.4")

HSP 1 Score: 125.946 bits (315), Expect = 3.910e-38
Identity = 61/106 (57.55%), Postives = 77/106 (72.64%), Query Frame = 0 
Query:    1 MKFFLMFATLIVVCNSVSLPV--EEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGY 104
            MK FL+ ATL  VC++ SLPV  E+K D+ KLC  IFKK+N+ I     +D I+ TL +EC I FM   KW+K+C+AFV+NVVKPQLEG +GH  PPK+TCR LGY
Sbjct:    1 MKLFLIIATLFAVCSAASLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCRALGY 106
[Close]
BLAST of EMLSAG00000011667 vs. L. salmonis peptides
Match: EMLSAP00000008834 (pep:novel supercontig:LSalAtl2s:LSalAtl2s54:712754:713146:-1 gene:EMLSAG00000008834 transcript:EMLSAT00000008834 description:"maker-LSalAtl2s54-snap-gene-6.37")

HSP 1 Score: 44.2838 bits (103), Expect = 2.798e-7
Identity = 29/108 (26.85%), Postives = 48/108 (44.44%), Query Frame = 0 
Query:    1 MKFFLMFATLIVVCNSVSL---PVEEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGYC 105
            M+ F++ A LI V ++ ++      EK   C  CKF+  KIN ++     VD+ +  L   C           + C  F+  VVKP++E  +     P+  C+    C
Sbjct:    1 MRVFILCA-LIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
[Close]
BLAST of EMLSAG00000011667 vs. L. salmonis peptides
Match: EMLSAP00000001115 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1186:244812:273376:-1 gene:EMLSAG00000001115 transcript:EMLSAT00000001115 description:"augustus_masked-LSalAtl2s1186-processed-gene-1.12")

HSP 1 Score: 46.595 bits (109), Expect = 3.172e-7
Identity = 25/100 (25.00%), Postives = 52/100 (52.00%), Query Frame = 0 
Query:    1 MKFFLMFATLIVVCNSVSLPVE---EKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKR 97
            M+F  +FA L+ V ++ ++  +   EK   C LCK++  K+N ++      D++++ ++  C           + C  FVN+V+KP++E  +     P++
Sbjct:    4 MRFLALFA-LVAVASAATVSKDQMIEKSVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPEK 102
[Close]
BLAST of EMLSAG00000011667 vs. L. salmonis peptides
Match: EMLSAP00000001533 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1265:70293:71465:1 gene:EMLSAG00000001533 transcript:EMLSAT00000001533 description:"maker-LSalAtl2s1265-augustus-gene-0.8")

HSP 1 Score: 43.8986 bits (102), Expect = 3.319e-7
Identity = 23/85 (27.06%), Postives = 36/85 (42.35%), Query Frame = 0 
Query:   21 VEEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGYC 105
            V++    C  CK     +   + +      I+D L+  CK      P   + CY  + NVVKPQL   + +   P+  C  + YC
Sbjct:   18 VDKDSSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHIINYC 102
The following BLAST results are available for this feature:
BLAST of EMLSAG00000011667 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011667 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 11
Match NameE-valueIdentityDescription
gi|592934592|gb|GAXK01023961.1|1.624e-222.73TSA: Calanus finmarchicus comp244608_c0_seq1 trans... [more]
gi|592779257|gb|GAXK01175311.1|7.973e-225.00TSA: Calanus finmarchicus comp3269_c3_seq2 transcr... [more]
gi|592770443|gb|GAXK01184125.1|1.412e-121.90TSA: Calanus finmarchicus comp134519_c2_seq1 trans... [more]
gi|592779258|gb|GAXK01175310.1|3.744e-126.32TSA: Calanus finmarchicus comp3269_c3_seq1 transcr... [more]
gi|592785566|gb|GAXK01169002.1|4.011e-125.32TSA: Calanus finmarchicus comp992_c0_seq1 transcri... [more]
gi|592762225|gb|GAXK01192188.1|8.125e-123.26TSA: Calanus finmarchicus comp40403_c2_seq1 transc... [more]
gi|592766461|gb|GAXK01188107.1|1.015e+024.49TSA: Calanus finmarchicus comp10792_c6_seq1 transc... [more]
gi|592766463|gb|GAXK01188105.1|1.048e+024.49TSA: Calanus finmarchicus comp10792_c3_seq3 transc... [more]
gi|592766465|gb|GAXK01188103.1|1.086e+024.49TSA: Calanus finmarchicus comp10792_c3_seq1 transc... [more]
gi|592766462|gb|GAXK01188106.1|5.178e+026.03TSA: Calanus finmarchicus comp10792_c3_seq4 transc... [more]

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BLAST of EMLSAG00000011667 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 6
Match NameE-valueIdentityDescription
EMLSAP000000116676.280e-73100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s80:923664... [more]
EMLSAP000000007301.137e-6587.62pep:novel supercontig:LSalAtl2s:LSalAtl2s1117:1230... [more]
EMLSAP000000007233.910e-3857.55pep:novel supercontig:LSalAtl2s:LSalAtl2s1115:1254... [more]
EMLSAP000000088342.798e-726.85pep:novel supercontig:LSalAtl2s:LSalAtl2s54:712754... [more]
EMLSAP000000011153.172e-725.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1186:2448... [more]
EMLSAP000000015333.319e-727.06pep:novel supercontig:LSalAtl2s:LSalAtl2s1265:7029... [more]
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BLAST of EMLSAG00000011667 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011667 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011667 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011667 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s80supercontigLSalAtl2s80:923664..924312 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s80-augustus-gene-9.25
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000011667 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000011667EMLSAT00000011667-707514Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s80:923664..924312+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000011667-694433 ID=EMLSAG00000011667-694433|Name=EMLSAG00000011667|organism=Lepeophtheirus salmonis|type=gene|length=649bp|location=Sequence derived from alignment at LSalAtl2s80:923664..924312+ (Lepeophtheirus salmonis)
TTTAACTATAAAAACACAAGAAAACCGATATATGGAGTACAAAAGAATTT
AATTCTCGAAGAAGACAACAAGACTCTAAATTATACAAAATGAAGTTCTT
TTTGATGTTTGCAACTCTTATTGTTGTTTGCAACTCTGTTTCCCTCCCAG
TTGAGGAAAAGTTGGACAACTGTAAGCTCTGCAAATTCATTTTTAAGAAG
ATCAACAATGCGATTGCTGATGGATTAGGCGTGGATAAAATTGTGGACAC
ATTAAAAATCGTAAGATATACAAATTTAATGATATCTCTATATTTCTTGA
ATCTTTCTGTTACATTGAAATTTTGTAGGAATGTAAGATCTTCTTTATGT
ATCGTCCTAAATGGGAGAAGAAATGTTATGCATTTGTAAATAACGTTGTG
AAACCACAGCTCGAGGGCTTCATGGGACATATTGCTCCACCAAAACGGAC
TTGTAGATTCCTTGGCTATTGCTAATTGAAATACGAATAATATAATGAAT
CATTAATATTTAAAACAATCGTTTATTTATTTAGCAATAAAAGGTTTCTT
TTAAATTACAAAGATAACTTATTAAGAGAAAGATGAAGGGGATATGAGAG
GATCCAGTTTCTTTATCCTACGCTTAGTAAATAAATCCTAGAAGCCTAG
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