EMLSAG00000000754, EMLSAG00000000754-683520 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000754
Unique NameEMLSAG00000000754-683520
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000754 vs. L. salmonis peptides
Match: EMLSAP00000000754 (pep:novel supercontig:LSalAtl2s:LSalAtl2s111:578963:580540:1 gene:EMLSAG00000000754 transcript:EMLSAT00000000754 description:"maker-LSalAtl2s111-snap-gene-5.20")

HSP 1 Score: 790.415 bits (2040), Expect = 0.000e+0
Identity = 388/388 (100.00%), Postives = 388/388 (100.00%), Query Frame = 0
Query:    1 MNTTLFFLALSIMLFLNEGVEMMKDKGGCRTTNGVPCLHKTDPKVYQYFQYHKWNSTCFKYNGRKQRCMVSPGVLRPCKCSKQCGGCGNKRIPTDQRKSTSFKSLNSHKFKVSQRNGEFSAINKVPINMFKDSSNFDKEEKDPNHNCNVGSMDKDIIRKFNEIQRIVEGSNGEDEDQPMYKKGLNIADGRNEDLENKGSSGNNSELSSEKLNYTQSKDSKSESKEEDEEESSSEMDEALESKSKLEDGPDYDDMESKAEKEEGPGDDTNESRTEMKQGSGDDGMNSKSEKEEVSGKKGIHFNMSSKKGEDDIARGKKDLEKDNGDKDERFVLMEFLEKMLSNLQKGNNSSKQEGNQTENAMDSVLLKKAKRKLYGAANFEILDDGERL 388
            MNTTLFFLALSIMLFLNEGVEMMKDKGGCRTTNGVPCLHKTDPKVYQYFQYHKWNSTCFKYNGRKQRCMVSPGVLRPCKCSKQCGGCGNKRIPTDQRKSTSFKSLNSHKFKVSQRNGEFSAINKVPINMFKDSSNFDKEEKDPNHNCNVGSMDKDIIRKFNEIQRIVEGSNGEDEDQPMYKKGLNIADGRNEDLENKGSSGNNSELSSEKLNYTQSKDSKSESKEEDEEESSSEMDEALESKSKLEDGPDYDDMESKAEKEEGPGDDTNESRTEMKQGSGDDGMNSKSEKEEVSGKKGIHFNMSSKKGEDDIARGKKDLEKDNGDKDERFVLMEFLEKMLSNLQKGNNSSKQEGNQTENAMDSVLLKKAKRKLYGAANFEILDDGERL
Sbjct:    1 MNTTLFFLALSIMLFLNEGVEMMKDKGGCRTTNGVPCLHKTDPKVYQYFQYHKWNSTCFKYNGRKQRCMVSPGVLRPCKCSKQCGGCGNKRIPTDQRKSTSFKSLNSHKFKVSQRNGEFSAINKVPINMFKDSSNFDKEEKDPNHNCNVGSMDKDIIRKFNEIQRIVEGSNGEDEDQPMYKKGLNIADGRNEDLENKGSSGNNSELSSEKLNYTQSKDSKSESKEEDEEESSSEMDEALESKSKLEDGPDYDDMESKAEKEEGPGDDTNESRTEMKQGSGDDGMNSKSEKEEVSGKKGIHFNMSSKKGEDDIARGKKDLEKDNGDKDERFVLMEFLEKMLSNLQKGNNSSKQEGNQTENAMDSVLLKKAKRKLYGAANFEILDDGERL 388          
BLAST of EMLSAG00000000754 vs. L. salmonis peptides
Match: EMLSAP00000000755 (pep:novel supercontig:LSalAtl2s:LSalAtl2s111:652866:654437:-1 gene:EMLSAG00000000755 transcript:EMLSAT00000000755 description:"snap_masked-LSalAtl2s111-processed-gene-5.5")

HSP 1 Score: 83.1889 bits (204), Expect = 3.191e-18
Identity = 48/122 (39.34%), Postives = 65/122 (53.28%), Query Frame = 0
Query:    6 FFLALSIMLFLNEGVEMMKDKGGCRTTNGVPCLHKTDPKVYQYFQYHKWNSTCFKYNGRKQRCMVSPGVLRPCKCSKQCGGCGNKRIPTDQRKSTSF-KSLNSHKFKVSQRNGEFSAINKVP 126
              LA    ++   G++    +  C   +G PCL  T+ +V +YFQY+ WNSTCFKY G K+RCM+  G LR C CSK+C  CG   I  D  K + F K  N  K+   +R    S   +VP
Sbjct:   10 MLLAFLFQVWAQSGLK----QDECHALDGTPCLQPTESEVLKYFQYYGWNSTCFKYKG-KRRCMIQTGRLRLCSCSKEC-DCGG--IENDLTKKSVFRKPFNMKKYGRKRRINLKSRSAQVP 123          
BLAST of EMLSAG00000000754 vs. L. salmonis peptides
Match: EMLSAP00000011068 (pep:novel supercontig:LSalAtl2s:LSalAtl2s747:71658:81234:-1 gene:EMLSAG00000011068 transcript:EMLSAT00000011068 description:"maker-LSalAtl2s747-augustus-gene-0.5")

HSP 1 Score: 63.1586 bits (152), Expect = 5.795e-11
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 0
Query:    8 LALSIMLFLNEGVEMMKDKGG-CRTTNGVPCLHKTDPKVYQYFQYHKWNSTCFKYNGRKQRCMVSPGVLRPCKCSKQC 84
            L + + LF+  GV ++K   G C++ NG  C+ K +     YF + KW STCFKY+  ++ CM+S G LRPC C  +C
Sbjct:    3 LKVCLTLFI-LGVCVVKQTNGVCKSVNGEICMTKNNQGAAIYFNWFKWESTCFKYS-EQRWCMISLGQLRPCTCENKC 78          

HSP 2 Score: 57.7658 bits (138), Expect = 2.725e-9
Identity = 26/59 (44.07%), Postives = 33/59 (55.93%), Query Frame = 0
Query:   27 GGCRTTNGVPCLHKTDPKVYQYFQYHKWNSTCFKYNGRKQRCMVSPGVLRPCKCSKQCG 85
            G C++  G  C+   DP    YF Y  WNSTCF Y      CM++ G L+PC CS+ CG
Sbjct:  425 GICKSRFGTNCMTIDDPGARVYFAYFNWNSTCFAYQ-DGHYCMINLGYLQPCDCSQDCG 482          
BLAST of EMLSAG00000000754 vs. L. salmonis peptides
Match: EMLSAP00000000866 (pep:novel supercontig:LSalAtl2s:LSalAtl2s114:123519:124869:1 gene:EMLSAG00000000866 transcript:EMLSAT00000000866 description:"maker-LSalAtl2s114-augustus-gene-1.6")

HSP 1 Score: 53.9138 bits (128), Expect = 2.811e-8
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 0
Query:   29 CRTTNGVPCLHKTDPKVYQYFQYHKWNSTCFKYNGRKQRCMVSPGVLRPCKCSKQC 84
            C TT+G+ C+ K +     YF++ K+ STCFKYN  ++ CM++PG LR C+C+  C
Sbjct:   24 CLTTSGLRCMTKDEDGADLYFKHFKFKSTCFKYN-EQRLCMITPGNLRQCECTNNC 78          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000754 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000754 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000754 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000007540.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s111:57896... [more]
EMLSAP000000007553.191e-1839.34pep:novel supercontig:LSalAtl2s:LSalAtl2s111:65286... [more]
EMLSAP000000110685.795e-1141.03pep:novel supercontig:LSalAtl2s:LSalAtl2s747:71658... [more]
EMLSAP000000008662.811e-844.64pep:novel supercontig:LSalAtl2s:LSalAtl2s114:12351... [more]
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BLAST of EMLSAG00000000754 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000754 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000754 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000754 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s111supercontigLSalAtl2s111:578963..580540 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s111-snap-gene-5.20
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000754 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000754EMLSAT00000000754-696601Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s111:578963..580540+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000754-683520 ID=EMLSAG00000000754-683520|Name=EMLSAG00000000754|organism=Lepeophtheirus salmonis|type=gene|length=1578bp|location=Sequence derived from alignment at LSalAtl2s111:578963..580540+ (Lepeophtheirus salmonis)
GTCCTTTGAAGTCATTAATCCCAAATCGGTGGAATTTAATTAGTAGTGAA TTGATTCAAATAATTAGTTGTACCAAAGTACAAATGAATACTACACTGTT TTTCCTTGCATTAAGCATTATGTTATTCCTAAATGAAGGGGTTGAAATGA TGAAGGACAAGGGAGGATGTCGAACCACGAATGGAGTTCCATGTCTCCAC AAGACAGACCCAAAAGTATATCAATATTTTCAATACCATAAATGGAACTC AACATGTTTCAAATATAACGGAAGAAAGCAAGTAAGTTGAAGTCTCCAAA AAAATAAAATATTTTTCTATGATTAACCTCTTTAATTATGTGTAGAGATG TATGGTGAGTCCTGGGGTGCTGAGACCTTGCAAGTGTTCAAAACAATGTG GGGGATGTGGTAATAAGAGAATCCCTACAGATCAGCGTAAATCTACTTCT TTTAAAAGTTTAAATTCCCATAAGTTCAAAGTATCGCAACGAAATGGTGA ATTCTCTGCAATTAACAAGGTTCCAATAAATATGTTCAAGGATTCTAGTA ACTTTGACAAAGAAGAAAAAGACCCCAATCATAATTGCAATGTAGGGTCA ATGGATAAAGATATTATTCGCAAATTCAATGAAATCCAAAGAATTGTGGA AGGATCAAACGGAGAGGATGAAGGTACATAAGGTATATTCAATAATTACT GAATATTTTCTTAATCATAATTTGTGTAGAYCAGCCGATGTATAAAAAGG GACTCAACATCGCTGATGGAAGGAATGAAGATTTAGAAAATAAAGGGTCC TCGGGGAATAATTCTGAGTTGAGTAGCGAGAAGTTGAATTATACCCAATC AAAAGATTCAAAGAGTGAATCAAAGGAGGAGGATGAAGAAGAATCTTCTT CTGAAATGGATGAAGCCTTAGAGTCTAAATCCAAATTAGAAGATGGACCT GATTATGATGATATGGAGTCAAAAGCGGAAAAAGAAGAAGGGCCTGGGGA TGATACTAATGAGTCCAGAACTGAAATGAAACAAGGATCTGGTGATGATG GTATGAATTCTAAAAGTGAAAAAGAAGAAGTCTCTGGCAAAAAAGGTATT CATTTCAATATGTCATCTAAAAAGGGTGAAGATGATATTGCTAGGGGCAA AAAGGACCTTGAAAAGGACAATGGCGACAAGGATGAACGATTCGTTCTGA TGGAATTTTTGGAAAAAATGTTGAGTAATTTACAAAAGGGAAATAATTCA TCAAAACAAGAAGGAAATCAAACAGAAAACGCCATGGATTCAGTTTTGCT AAAGAAAGCTAAACGAAAGTTGTATGGCGCTGCCAACTTTGAAATATTAG ATGATGGGGAGAGACTATGAATTTAATTATATTTTTCTTCTTTGCAAGTC TGGTTGTTTGTGTTTTTGAGTTAAAATAAATATGCATTTAATATTTTTGA ATCTATTAAAGTTGTGTCGGTTGTAAATGGAATCACTTCATGAACTAATT CGTTCTTCTTCTTTTTTCACGACCCAAGATCGTAACATTAAACTAATTTC AAAAGTTGAGACCTACCTTACAGCTGAA
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