EMLSAG00000000957, EMLSAG00000000957-683723 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000957
Unique NameEMLSAG00000000957-683723
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000957 vs. C. finmarchicus
Match: gi|592868745|gb|GAXK01088817.1| (TSA: Calanus finmarchicus comp2357922_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 6.137e+0
Identity = 23/66 (34.85%), Postives = 28/66 (42.42%), Query Frame = 0 
Query:  408 KATVSKYKISMEVKVXXXXKSKDNNIPLSSVFEKMDTDL----------RKESFDDGGXTNEEEQE 463
            K  V KY+ +M           DNN    SV +++  DL          RKES DD G  NEE  E
Sbjct:  130 KGQVPKYRTAM----------SDNNESKKSVLDRLSGDLLEENCSESEDRKESIDDAGVENEERGE 297
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BLAST of EMLSAG00000000957 vs. C. finmarchicus
Match: gi|592927877|gb|GAXK01030607.1| (TSA: Calanus finmarchicus comp117507_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 8.981e+0
Identity = 20/61 (32.79%), Postives = 30/61 (49.18%), Query Frame = 0 
Query:  355 FISGSFVSKEIPRVEQRQWYKKIENFMIEKETIFPEVLKARQKEGFVPSKQVIKATVSKYK 415
            F S S  SKE+P+ E    +  ++     K  I  E  + +    F+PSKQV  A + +YK
Sbjct: 2180 FRSKSRSSKEVPKQESNDPFGHLKCSPAMKSFIVTEFEREKVSCNFLPSKQVALAVIHRYK 2362
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BLAST of EMLSAG00000000957 vs. C. finmarchicus
Match: gi|592782441|gb|GAXK01172127.1| (TSA: Calanus finmarchicus comp62177_c11_seq9 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 9.365e+0
Identity = 25/90 (27.78%), Postives = 44/90 (48.89%), Query Frame = 0 
Query:  282 SLDSEYHYKEFPKDANKKIK-GRYSVTFCYNPRFYQTKYETRSDILQDEEEQSRFEH--ILESLFKKKEEEMNNSKFISGSFVSKEIPRV 368
            +L S YH    PKD +K+IK G+      +N R  +   E  S + +  + +   E    +E +FKK E++      I G ++S+ +P +
Sbjct:  362 NLGSIYHRSGLPKDLDKEIKIGK------FNARDDEIILENWSHLYKQTQSKLDLEENDAVEEIFKKTEKDKGLKNNIVGYYLSQGLPDI 613
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BLAST of EMLSAG00000000957 vs. L. salmonis peptides
Match: EMLSAP00000000957 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1166:81172:83346:-1 gene:EMLSAG00000000957 transcript:EMLSAT00000000957 description:"augustus_masked-LSalAtl2s1166-processed-gene-0.16")

HSP 1 Score: 1118.22 bits (2891), Expect = 0.000e+0
Identity = 562/562 (100.00%), Postives = 562/562 (100.00%), Query Frame = 0 
Query:    1 MDEIPLPPNEPSYSPSHVTSSPEAPSANMGTTPPSGEKVVPVLGKEKAKKRLLAFSKGISFGLKSRNNRIQSSKDNPVVENDEDENESELCFSSTTNNFSSSSLNSSSVKKLNIDSIMEEEKELAANRPNLSYIPARSASSHVMSAVPQLIVPVLPPNALIPQIPPSSFEKLRKDLIIXSMTDTLGNTLIIIPDGAIGMGLQVFEPDFPKFKRRLDRDHGRLSCVESRKRTNLNIVKSGDEFIWKEYVRDPVASDNELAFRGLSPKIVQNYSMEAIQDLLWSLDSEYHYKEFPKDANKKIKGRYSVTFCYNPRFYQTKYETRSDILQDEEEQSRFEHILESLFKKKEEEMNNSKFISGSFVSKEIPRVEQRQWYKKIENFMIEKETIFPEVLKARQKEGFVPSKQVIKATVSKYKISMEVKVXXXXKSKDNNIPLSSVFEKMDTDLRKESFDDGGXTNEEEQEDFPENLDELLSSKKSQSSKSSKKKKRKKDYEDDDEEDELLNNEDLLNESDKVLINEENEKKEPSSHSKKSKKHKSEIKSDHEKRTDSKKKKRRRNVKSL 562
            MDEIPLPPNEPSYSPSHVTSSPEAPSANMGTTPPSGEKVVPVLGKEKAKKRLLAFSKGISFGLKSRNNRIQSSKDNPVVENDEDENESELCFSSTTNNFSSSSLNSSSVKKLNIDSIMEEEKELAANRPNLSYIPARSASSHVMSAVPQLIVPVLPPNALIPQIPPSSFEKLRKDLIIXSMTDTLGNTLIIIPDGAIGMGLQVFEPDFPKFKRRLDRDHGRLSCVESRKRTNLNIVKSGDEFIWKEYVRDPVASDNELAFRGLSPKIVQNYSMEAIQDLLWSLDSEYHYKEFPKDANKKIKGRYSVTFCYNPRFYQTKYETRSDILQDEEEQSRFEHILESLFKKKEEEMNNSKFISGSFVSKEIPRVEQRQWYKKIENFMIEKETIFPEVLKARQKEGFVPSKQVIKATVSKYKISMEVKVXXXXKSKDNNIPLSSVFEKMDTDLRKESFDDGGXTNEEEQEDFPENLDELLSSKKSQSSKSSKKKKRKKDYEDDDEEDELLNNEDLLNESDKVLINEENEKKEPSSHSKKSKKHKSEIKSDHEKRTDSKKKKRRRNVKSL
Sbjct:    1 MDEIPLPPNEPSYSPSHVTSSPEAPSANMGTTPPSGEKVVPVLGKEKAKKRLLAFSKGISFGLKSRNNRIQSSKDNPVVENDEDENESELCFSSTTNNFSSSSLNSSSVKKLNIDSIMEEEKELAANRPNLSYIPARSASSHVMSAVPQLIVPVLPPNALIPQIPPSSFEKLRKDLIIXSMTDTLGNTLIIIPDGAIGMGLQVFEPDFPKFKRRLDRDHGRLSCVESRKRTNLNIVKSGDEFIWKEYVRDPVASDNELAFRGLSPKIVQNYSMEAIQDLLWSLDSEYHYKEFPKDANKKIKGRYSVTFCYNPRFYQTKYETRSDILQDEEEQSRFEHILESLFKKKEEEMNNSKFISGSFVSKEIPRVEQRQWYKKIENFMIEKETIFPEVLKARQKEGFVPSKQVIKATVSKYKISMEVKVXXXXKSKDNNIPLSSVFEKMDTDLRKESFDDGGXTNEEEQEDFPENLDELLSSKKSQSSKSSKKKKRKKDYEDDDEEDELLNNEDLLNESDKVLINEENEKKEPSSHSKKSKKHKSEIKSDHEKRTDSKKKKRRRNVKSL 562
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000957 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000957 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592868745|gb|GAXK01088817.1|6.137e+034.85TSA: Calanus finmarchicus comp2357922_c0_seq2 tran... [more]
gi|592927877|gb|GAXK01030607.1|8.981e+032.79TSA: Calanus finmarchicus comp117507_c1_seq1 trans... [more]
gi|592782441|gb|GAXK01172127.1|9.365e+027.78TSA: Calanus finmarchicus comp62177_c11_seq9 trans... [more]
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BLAST of EMLSAG00000000957 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000009570.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1166:8117... [more]
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BLAST of EMLSAG00000000957 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000957 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000957 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000957 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1166supercontigLSalAtl2s1166:81172..83346 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s1166-processed-gene-0.16
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000957 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000957EMLSAT00000000957-696804Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1166:81172..83346-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000957-683723 ID=EMLSAG00000000957-683723|Name=EMLSAG00000000957|organism=Lepeophtheirus salmonis|type=gene|length=2175bp|location=Sequence derived from alignment at LSalAtl2s1166:81172..83346- (Lepeophtheirus salmonis)
ATGGATGAGATTCCTCTTCCGCCGAATGAGCCGTCTTACTCTCCAAGTCA
TGTGACAAGTTCTCCAGAGGCTCCCAGCGCCAACATGGGTACGACTCCTC
CTTCGGGGGAGAAAGTAGTGCCCGTTCTTGGGAAGGAAAAGGCGAAGAAG
CGRCTTCTGGCGTTTAGCAAGGGGATTTCCTTTGGACTCAAATCACGGAA
CAACAGGATCCAAAGCTCGAAAGACAACCCCGTTGTGGAAAATGATGAGG
ATGAGAATGAGTCCGAGTTGTGTTGTAAGTTGTTGTGATTCGAATGATCC
TCTCTAATGAATGTTTATTTCTGATTCTAGTCTCCTCCACAACAAATAAC
TTCTCTTCCTCGTCTCTCAACTCCTCCTCCGTCAAGAAGCTCAACATTGA
CAGCATCATGGAAGAAGAGAAAGAATTAGCTGCTAATCGGCCCAATCTCT
CCTATATCCCAGCCAGATCAGCCTCATCTCATGTCATGTCCGCAGTTCCC
CAGCTCATTGTTCCTGTACTTCCACCCAATGCCCTTATTCCCCAGATTCC
TCCCTCATCCTTTGAAAAACTGAGAAAAGATCTGATCATCGMTTCGATGA
CAGACACTCTAGGAAACACTCTGATCATCATYCCCGACGGAGCCATAGGT
CCTCCTCTCATAAATATGCGGATATTGAGGAGATTCCCTCAGATTGGAAA
GCGTTCAAAGGCATGGGTCTTCAAGTCTTTGAGCCAGACTTTCCTAAATT
TAAACGTCGTTTAGATCGTGATCATGGAAGACTCTCTTGCGTTGAGAGTA
GGAAAAGAACGAATCTTAATATTGTTAAAAGTGGAGACGAGTTTATTTGG
AAAGAATATGTCAGAGACCCTGTTGCAAGTGATAACGAACTAGCATTTCG
AGGATTAAGTCCTAAAATAGTTCAGAACTACAGTATGGAAGCTATTCAGG
ATCTTCTTTGGAGCTTAGATTCCGAATACCACTACAAAGAATTCCCTAAA
GACGCTAACAAAAAAATAAAAGGGAGATATTCAGTGACATTTTGCTATAA
CCCTCGTTTCTATCAGACCAAATATGAGACCCGAAGTGACATTCTACAAG
ATGAAGAAGAACAGTCTAGATTTGAACATATACTTGAATCCTTGTTTAAA
AAAAAAGAAGAAGAGATGAATAATTCTAAATTCATATCGGGTTCGTTTGT
AAGCAAAGAAATCCCTCGAGTCGAGCAGCGACAATGGTACAAGAAAATAG
AGAACTTTATGATTGAAAAAGAAACTATTTTTCCAGAGGTTTTGAAGGCT
CGCCAAAAGGAAGGATTTGTACCAAGCAAGCAAGTTATTAAAGCGACTGT
GTCAAAGTATAAAATATCTATGGAAGTTAAAGTTAWASRAGMACAMAAAT
CTAAAGACAATAACATACCGCTATCATCCGTGTTTGAAAAGATGGACACG
GATCTGAGAAAGGAATCATTTGATGATGGTGGTRAGACAAGTCATCACAA
AAAACATAAAAAGTTGAAAAAAAAGAAAAGGTTAAAAATAATTATATTAC
AGATGAGGAAGAACAGGAGGATTTTCCTGAGAATTTGGATGAACTTTTAT
CATCGAAGAAAAGTCAATCCTCAAAATCATCTAAAAAGAAGAAGAGGAAG
AAGGACTATGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGAGACAAGTCATCA
CAAAAAACATAAAAAAGTTGTAAAAAAAAAGAAAAGGTTAAAAATAATTA
TATTACAGATGAGGAAGAACAGGAGGATTTTCCTGAGAATTTGGATGAAC
TTTTATCATCGAAGAAAAGTCAATCCTCAAAATCATCTAAAAAGAAGAAG
AGGAAGAAGGACTATGAGGATGATGATGAAGAAGATGAATTGCTCAATAA
TGAAGATTTACTAAATGAAAGTGATAAAGTACTCATCAATGAAGAAAACG
AGAAAAAAGAGCCTTCTTCCCATTCTAAAAAATCTAAAAAGCACAAAAGT
GAAATCAAATCCGATCACGAAAAACGAACCGACTCCAAAAAGAAAAAAAG
AAGAAGAAACGTAAAAAGTCTATGA
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