EMLSAG00000001037, EMLSAG00000001037-683803 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001037
Unique NameEMLSAG00000001037-683803
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592939240|gb|GAXK01019313.1| (TSA: Calanus finmarchicus comp80563_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 42.3578 bits (98), Expect = 6.942e-4
Identity = 30/109 (27.52%), Postives = 52/109 (47.71%), Query Frame = 0
Query:   22 NIGESLENLRNDTRNSDLHFLVYNSKGLESRILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKL--MDSFCDLCRTLGISNI 128
            N+ E L N R +    D+     +++     + AH+ I    SN  +K+         I +  ++ L G K   +EA+ISY Y+G TN+ L  +D+F ++   L I  +
Sbjct:  719 NLSEGLRNFRTENNFCDVTLACEDNQ-----LQAHKVILSASSNFFKKVLTT-----NIHQHPLLYLKGVKMSDLEAIISYIYHGETNVALGELDTFLEVATELQIKGL 1015          
BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592842136|gb|GAXK01115408.1| (TSA: Calanus finmarchicus comp4351477_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 7.071e-2
Identity = 25/83 (30.12%), Postives = 40/83 (48.19%), Query Frame = 0
Query:   48 GLESRILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYG--HTNLKLMDSFCDLCRTLGISNI 128
            G E R+ AH+F+    S +   +  E      ++ P  I L GF+   V ALI Y Y+G  H  ++ +D F    + L I+ +
Sbjct:   58 GSEGRVSAHKFMLSNASPVFENILSEC----SVTAPF-IYLRGFEFEDVSALIRYIYFGEVHIAVEKLDRFLATAKELKINGL 291          
BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592808510|gb|GAXK01146058.1| (TSA: Calanus finmarchicus comp398749_c4_seq2 transcribed RNA sequence)

HSP 1 Score: 36.1946 bits (82), Expect = 1.023e-1
Identity = 23/84 (27.38%), Postives = 37/84 (44.05%), Query Frame = 0
Query:   91 FKSIAVEALISYFYYGHTNLKLMDSFCDLCRTLGISNINKISLEYIPVHDNTDLVDPWGNTKTP--RHHSNTKIFTNYNLSEYD 172
            ++  + E L  +    H  ++   SFCD+C +  ++    I  ++  V  N D  D  G+TK    RH S T     +N  E D
Sbjct: 1442 YEGTSRECLRKHKQVKHEGVRYKCSFCDVCYSTPVALTKHIRAQHEGVRYNCDKCDYQGSTKEQLKRHTSTTHEGLRFNCDECD 1693          
BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592808511|gb|GAXK01146057.1| (TSA: Calanus finmarchicus comp398749_c4_seq1 transcribed RNA sequence)

HSP 1 Score: 36.1946 bits (82), Expect = 1.092e-1
Identity = 23/84 (27.38%), Postives = 37/84 (44.05%), Query Frame = 0
Query:   91 FKSIAVEALISYFYYGHTNLKLMDSFCDLCRTLGISNINKISLEYIPVHDNTDLVDPWGNTKTP--RHHSNTKIFTNYNLSEYD 172
            ++  + E L  +    H  ++   SFCD+C +  ++    I  ++  V  N D  D  G+TK    RH S T     +N  E D
Sbjct: 2459 YEGTSRECLRKHKQVKHEGVRYKCSFCDVCYSTPVALTKHIRAQHEGVRYNCDKCDYQGSTKEQLKRHTSTTHEGLRFNCDECD 2710          
BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592891349|gb|GAXK01067026.1| (TSA: Calanus finmarchicus comp5364_c33_seq3 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 1.168e-1
Identity = 32/124 (25.81%), Postives = 59/124 (47.58%), Query Frame = 0
Query:   22 NIGESLENLRNDTRNSDLHFLVYNSKGLESRILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKL--MDSFCDLCRTL---GISNINKISLEYIPVHD 140
            NIG SL +LRN+    D+     +++ +E    AH+ I    S+  + +    + +H    P +I L G K   ++A+I + Y+G   +    ++ F      L   G++N +KI  E   ++D
Sbjct:   26 NIGNSLRDLRNECDFFDVTIASDDNEQIE----AHKLILSASSSFFKTVLKNNRHQH----P-LIYLKGIKMTNIKAMIDFMYHGQVEVGQDGLNEFLAAAEELKVKGLTNGDKIRAEESYLND 370          
BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592891346|gb|GAXK01067029.1| (TSA: Calanus finmarchicus comp5364_c37_seq2 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 1.748e-1
Identity = 31/118 (26.27%), Postives = 56/118 (47.46%), Query Frame = 0
Query:   22 NIGESLENLRNDTRNSDLHFLVYNSKGLESRILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKL--MDSFCDLCRTL---GISNINKISLE 134
            NIG SL +LRN+    D+     +++ +E    AH+ I    S+  + +    + +H    P +I L G K   ++A+I + Y+G   +    ++ F      L   G++N +KI  E
Sbjct:   72 NIGNSLRDLRNECDFFDVTIASDDNEQIE----AHKLILSASSSFFKTVLKNNRHQH----P-LIYLKGIKMTNIKAMIDFMYHGQVEVGQDGLNEFLAAAEELKVKGLTNGDKIRAE 398          
BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592908719|gb|GAXK01049656.1| (TSA: Calanus finmarchicus comp1088767_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 2.299e-1
Identity = 33/119 (27.73%), Postives = 53/119 (44.54%), Query Frame = 0
Query:   16 IIFCFYNIGE----SLENLRNDTRNSDLHFLVYNSKGLESRILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKL--MDSFCDLCRTLGISNI 128
            + F F N  E    ++++L ND+ NSD+        G E +I AH+F+    S +  K+  E         P  I + GF+   + AL+ Y Y G   + +  +DSF      L I  +
Sbjct:  641 VSFQFQNFPEHAVNTVKSLFNDS-NSDVTLTC----GSEGQINAHKFLLSSASPVFEKILSECS-----VTPQTIYMRGFQYEDLSALVQYMYLGEVYIPVDKLDSFISTAIELKIKGL 967          
BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592891347|gb|GAXK01067028.1| (TSA: Calanus finmarchicus comp5364_c37_seq1 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 2.328e-1
Identity = 30/118 (25.42%), Postives = 54/118 (45.76%), Query Frame = 0
Query:   22 NIGESLENLRNDTRNSDLHFLVYNSKGLESRILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKL--MDSFCDLCRTL---GISNINKISLE 134
            NIG SL +LRN+    D+     +++ +E    AH+ I    S+  + +    + +H +     I L G K   ++A+I + Y+G   +    ++ F      L   G++N  KI  E
Sbjct:   72 NIGNSLRDLRNECDFFDVTIASDDNEQIE----AHKLILSASSSFFKTVLKNNRHQHPL-----IYLKGIKMTNIKAMIDFMYHGQVEVGQDGLNEFLAAAEELKVKGLTNGGKIKSE 398          
BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592908718|gb|GAXK01049657.1| (TSA: Calanus finmarchicus comp1088767_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 2.579e-1
Identity = 33/119 (27.73%), Postives = 53/119 (44.54%), Query Frame = 0
Query:   16 IIFCFYNIGE----SLENLRNDTRNSDLHFLVYNSKGLESRILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKL--MDSFCDLCRTLGISNI 128
            + F F N  E    ++++L ND+ NSD+        G E +I AH+F+    S +  K+  E         P  I + GF+   + AL+ Y Y G   + +  +DSF      L I  +
Sbjct:  617 VSFQFQNFPEHAVNTVKSLFNDS-NSDVTLTC----GSEGQINAHKFLLSSASPVFEKILSECS-----VTPQTIYMRGFQYEDLSALVQYMYLGEVYIPVDKLDSFISTAIELKIKGL 943          
BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592790669|gb|GAXK01163899.1| (TSA: Calanus finmarchicus comp383846_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 5.618e-1
Identity = 23/92 (25.00%), Postives = 48/92 (52.17%), Query Frame = 0
Query:   53 ILAHQFIFIPKSNLLRKLCYEVK-GKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKLMD--SFCDLCRTLGISNINKISLEYIPVHDN 141
            I AH+ + I  S   + L   +K G+H +   +++  + FK +  +AL+ Y YYG  ++   D  S     +TL + ++ ++S +   +++N
Sbjct:  158 IQAHKLVLIACSEYFKVLLTPLKEGQHPL---IILEGVNFKEL--KALLDYMYYGEVSVSKSDLPSLIKSSKTLKVKSLGEVSNQLARLNEN 418          
BLAST of EMLSAG00000001037 vs. L. salmonis peptides
Match: EMLSAP00000001037 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1171:93755:95025:1 gene:EMLSAG00000001037 transcript:EMLSAT00000001037 description:"augustus_masked-LSalAtl2s1171-processed-gene-1.8")

HSP 1 Score: 487.649 bits (1254), Expect = 2.821e-176
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0
Query:    1 MKYVNLKCLGSHWKXIIFCFYNIGESLENLRNDTRNSDLHFLVYNSKGLESRILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKLMDSFCDLCRTLGISNINKISLEYIPVHDNTDLVDPWGNTKTPRHHSNTKIFTNYNLSEYDSIVLLNDKKIFCPPKVSLLKELVKRDSSLKEDPFLSTENPGSNCPTLFKPHSLLQSHTNNYAKDKSDK 240
            MKYVNLKCLGSHWKXIIFCFYNIGESLENLRNDTRNSDLHFLVYNSKGLESRILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKLMDSFCDLCRTLGISNINKISLEYIPVHDNTDLVDPWGNTKTPRHHSNTKIFTNYNLSEYDSIVLLNDKKIFCPPKVSLLKELVKRDSSLKEDPFLSTENPGSNCPTLFKPHSLLQSHTNNYAKDKSDK
Sbjct:    1 MKYVNLKCLGSHWKXIIFCFYNIGESLENLRNDTRNSDLHFLVYNSKGLESRILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKLMDSFCDLCRTLGISNINKISLEYIPVHDNTDLVDPWGNTKTPRHHSNTKIFTNYNLSEYDSIVLLNDKKIFCPPKVSLLKELVKRDSSLKEDPFLSTENPGSNCPTLFKPHSLLQSHTNNYAKDKSDK 240          
BLAST of EMLSAG00000001037 vs. L. salmonis peptides
Match: EMLSAP00000009767 (pep:novel supercontig:LSalAtl2s:LSalAtl2s632:219800:221127:-1 gene:EMLSAG00000009767 transcript:EMLSAT00000009767 description:"maker-LSalAtl2s632-augustus-gene-2.14")

HSP 1 Score: 95.9005 bits (237), Expect = 3.319e-23
Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = 0
Query:   22 NIGESLENLRNDTRNSDLHFLVYN-SKGLESRILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKLMDSFCDLCRTLGISNIN 129
            N G ++ +L N  + +DL F+  N  KG      AHQF+F PKS  LR LC E +GK  IS+PV+ITL G    +++A+I YFY G T+ +L D   D+C  LGI N++
Sbjct:   16 NFGNAVSDLLNHEKLTDLRFITVNEQKGTTKSFNAHQFLFTPKSAFLRTLCNEARGKQLISDPVIITLPGISPHSMQAVIDYFYTGITDFELRDDLEDMCLLLGIDNVD 124          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001037 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001037 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592939240|gb|GAXK01019313.1|6.942e-427.52TSA: Calanus finmarchicus comp80563_c0_seq1 transc... [more]
gi|592842136|gb|GAXK01115408.1|7.071e-230.12TSA: Calanus finmarchicus comp4351477_c0_seq1 tran... [more]
gi|592808510|gb|GAXK01146058.1|1.023e-127.38TSA: Calanus finmarchicus comp398749_c4_seq2 trans... [more]
gi|592808511|gb|GAXK01146057.1|1.092e-127.38TSA: Calanus finmarchicus comp398749_c4_seq1 trans... [more]
gi|592891349|gb|GAXK01067026.1|1.168e-125.81TSA: Calanus finmarchicus comp5364_c33_seq3 transc... [more]
gi|592891346|gb|GAXK01067029.1|1.748e-126.27TSA: Calanus finmarchicus comp5364_c37_seq2 transc... [more]
gi|592908719|gb|GAXK01049656.1|2.299e-127.73TSA: Calanus finmarchicus comp1088767_c0_seq1 tran... [more]
gi|592891347|gb|GAXK01067028.1|2.328e-125.42TSA: Calanus finmarchicus comp5364_c37_seq1 transc... [more]
gi|592908718|gb|GAXK01049657.1|2.579e-127.73TSA: Calanus finmarchicus comp1088767_c0_seq2 tran... [more]
gi|592790669|gb|GAXK01163899.1|5.618e-125.00TSA: Calanus finmarchicus comp383846_c3_seq1 trans... [more]

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BLAST of EMLSAG00000001037 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000010372.821e-176100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1171:9375... [more]
EMLSAP000000097673.319e-2344.04pep:novel supercontig:LSalAtl2s:LSalAtl2s632:21980... [more]
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BLAST of EMLSAG00000001037 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001037 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001037 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001037 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1171supercontigLSalAtl2s1171:93755..95025 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s1171-processed-gene-1.8
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001037 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001037EMLSAT00000001037-696884Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1171:93755..95025+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001037-683803 ID=EMLSAG00000001037-683803|Name=EMLSAG00000001037|organism=Lepeophtheirus salmonis|type=gene|length=1271bp|location=Sequence derived from alignment at LSalAtl2s1171:93755..95025+ (Lepeophtheirus salmonis)
ATGAAATATGTTAACCTGAAATGTCTTGGAAGTCACTGGAAGGKAATCAT TTTTTGCTTCTACGTAATTTGCATAATTGAATTGCAACAAATACTGTTTA TTAAATTGTATTTCCATTGCAGAATATTGGAGAAAGTTTGGAGAATCTTC GAAATGATACAAGAAACTCTGACCTGCATTTTTTAGTCTATAATTCTAAG GGATTAGAGAGTCGCATCTTAGCTCATCAGTTTATATTTATTCCCAAATC TAATTTACTTCGYAAATTATGCTATGAAGTTAAAGGAAAACACGGAGTAA CATTTCCATAAAGTGCTCCTATGTTGAGTTTATTTAAAATATTATTTTTA TTATTTTCAGATATCTGAGCCAGTTGTAATTACACTTATCGGATTTAAAT CCATTGCAGTTGAAGCTTTAATTTCGTACTTTTACTATGGTCATACTAAT TTAAAACTCATGGATAGTTTTTGTGATCTATGCCGTACTCTTGGTATCTC GAATATAAACAAAATCTCATTAGAGTATATTCCTGTACATGACAATACGG ATTTGGTCGATCCTTGGGGTAATACAAAAACACCACGACATCATTCAAAC ACTAAGATATTTACAAATTATAATCTATCCGAATATGATAGTATCGTATT ATTGAATGATAAGAAAATATTTTGCCCTCCAAAAGTTTCATTGTTGAAAG AATTGGTGAAAAGGGATTCTAGTTTAAAAGAAGATCCTTTCTTAAGTACT GAAAATCCTGGCTCTAATTGCCCAACATTGTTCAAGCCTCATAGTTTACT ACAATCTCATACAAATAATTACGCGAAGGATAAAAGTGACAAGTAACAAT ACGTTTTATTTTGATTTAAATTTTTAGGTACTTACAATTTATTCGTGTAA GTATATAACTTTTTTTTTAAACAGTGATCCTAAGTGCCTAAGCAAGAAAA TGAAGTTGAGTTTTACTCAGAATATTAAAGGAAAGTTGTTCTTAGAACCA AGTATAATTAAAGACAAAAAAACGATAACTATTAGTACAAATTGTGCTCC AAGGAATTCTCCAAAAGTCAATTCTTACAAAAAAGATACCTTTTTTAAAA AATAGTTCGGAAATATCACAATTTACTTGATCAACTCATCAATTATGATA CATCCTCATAATAACTGTGAAATATAACTTAATCNAATCAATAACCTCAG AAATCGTATTTTCAATTATTATTTCTTTTCCATTACCTAATCAAGATGTA TGAGTAACTTTGTCTTCTAAT
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