EMLSAG00000001037, EMLSAG00000001037-683803 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001037
Unique NameEMLSAG00000001037-683803
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592790668|gb|GAXK01163900.1| (TSA: Calanus finmarchicus comp383846_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 7.129e-1
Identity = 23/92 (25.00%), Postives = 48/92 (52.17%), Query Frame = 0 
Query:   53 ILAHQFIFIPKSNLLRKLCYEVK-GKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKLMD--SFCDLCRTLGISNINKISLEYIPVHDN 141
            I AH+ + I  S   + L   +K G+H +   +++  + FK +  +AL+ Y YYG  ++   D  S     +TL + ++ ++S +   +++N
Sbjct:  158 IQAHKLVLIACSEYFKVLLTPLKEGQHPL---IILEGVNFKEL--KALLDYMYYGEVSVSKSDLPSLIKSSKTLKVKSLGEVSNQLARLNEN 418
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BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592860754|gb|GAXK01096808.1| (TSA: Calanus finmarchicus comp54344_c20_seq2 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 7.923e-1
Identity = 24/101 (23.76%), Postives = 45/101 (44.55%), Query Frame = 0 
Query:   30 LRNDTRNSDLHFLVYNSKGLESRILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKLMD--SFCDLCRTLGISNI 128
            LR +    D+  +  + K  E    AH+ I    S++ + +  + K  H +     + L G  S  +  ++ + Y+G   +  MD  SF D+ R LG+  +
Sbjct:   90 LREEQEYCDVTLVSDDVKHFE----AHKLILATSSSVFKDILKKNKQVHPL-----LYLRGINSSQLALVLDFIYHGEVKVPQMDLDSFLDVARDLGVKGL 365
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BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592787881|gb|GAXK01166687.1| (TSA: Calanus finmarchicus comp1193_c26_seq61 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 8.977e-1
Identity = 47/229 (20.52%), Postives = 90/229 (39.30%), Query Frame = 0 
Query:   22 NIGESLENLRNDTRNSDLHFLVYNSKGLESRILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKLMD--SFCDLCRTLGI-------------SNINKISLEYI----PVHDNTDLVDPWGNTKTPRHHSNTKIFTNYNLSEYDSIVLLNDKKI--FCPPKVSLLKELVKRDSSLKEDPFLSTENPGSNCPTLFKPHSLLQSH 229
            NI  + + LR+D    D+     +    + +I AH+ +    S   + +    +  H +     I + G    +VEA++ + YYG  N+   D   F  + + L +             S + K+  +++    P+    D+V+                 T  +LS  D++ + +   +  FC  K S  K+ +KR +   E       +P + C   ++  S LQSH
Sbjct:  325 NISNAFKELRDDKDFFDVTLACDD----DFQIEAHKVVLSASSTFFKHVLKRNQHNHPL-----IYMRGLNRKSVEAIVDFMYYGEVNVDQEDLNGFLTVAQELKVKGLESKENYASEASTLQKVKPDFLYESDPIKSENDIVETIEVDSLSEEEVFNSEETITSLSGNDTMEMKDGLWVCTFC-GKTSSFKQNLKRHT---ETHLGGMAHPCTTCGKTYRNKSSLQSH 972
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BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592860762|gb|GAXK01096800.1| (TSA: Calanus finmarchicus comp54344_c19_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 1.007e+0
Identity = 24/101 (23.76%), Postives = 45/101 (44.55%), Query Frame = 0 
Query:   30 LRNDTRNSDLHFLVYNSKGLESRILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKLMD--SFCDLCRTLGISNI 128
            LR +    D+  +  + K  E    AH+ I    S++ + +  + K  H +     + L G  S  +  ++ + Y+G   +  MD  SF D+ R LG+  +
Sbjct:  695 LREEQEYCDVTLVSDDVKHFE----AHKLILATSSSVFKDILKKNKQVHPL-----LYLRGINSSQLALVLDFIYHGEVKVPQMDLDSFLDVARDLGVKGL 970
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BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592894244|gb|GAXK01064131.1| (TSA: Calanus finmarchicus comp182480_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.588e+0
Identity = 28/93 (30.11%), Postives = 40/93 (43.01%), Query Frame = 0 
Query:  147 PWGNTKTPRHHSNTKIFTNYNLSEY-------DSIVLL----NDKKIFCPPKVSLLKELVKRDSSLKEDPFLSTENPGSNCPTLFKPHSLLQS 228
            PWG TK  R   N   FT   L+ +       DS  +L    NDK ++C   +  + +++ R  +LK D    T  P  N  T    H +L S
Sbjct:  423 PWGWTKGKRREDN---FTMLGLTMHSNMEFILDSSAVLEMVSNDKVMYCIICIEDVTDVIIRGGTLKGDRQTHTYTPHHNRTTHEWGHGILIS 692
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BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592863388|gb|GAXK01094174.1| (TSA: Calanus finmarchicus comp49961_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.180e+0
Identity = 12/23 (52.17%), Postives = 14/23 (60.87%), Query Frame = 0 
Query:    5 NLKCLGSHWKXIIFCFYNIGESL 27
            N  CLGSHW  I  CF+ +G  L
Sbjct: 1103 NHSCLGSHWPGIFCCFWTMGRGL 1171
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BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592805254|gb|GAXK01149314.1| (TSA: Calanus finmarchicus comp96464_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 4.379e+0
Identity = 19/84 (22.62%), Postives = 39/84 (46.43%), Query Frame = 0 
Query:   53 ILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKL--MDSFCDLCRTLGISNINKISLE 134
            +  H+ +    SNL ++L  E  GKH +   V++  + +  +    ++ Y Y G  ++    +DSF    + L I  ++ +  E
Sbjct:  484 VRCHKIVLAAASNLFKQLFVESTGKHPV---VILPHVSYSELV--NIVEYIYKGEISVGQSNLDSFLAAAKHLEICGVDPLKSE 720
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BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592805255|gb|GAXK01149313.1| (TSA: Calanus finmarchicus comp96464_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 4.423e+0
Identity = 19/84 (22.62%), Postives = 39/84 (46.43%), Query Frame = 0 
Query:   53 ILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKL--MDSFCDLCRTLGISNINKISLE 134
            +  H+ +    SNL ++L  E  GKH +   V++  + +  +    ++ Y Y G  ++    +DSF    + L I  ++ +  E
Sbjct:  508 VRCHKIVLAAASNLFKQLFVESTGKHPV---VILPHVSYSELV--NIVEYIYKGEISVGQSNLDSFLAAAKHLEICGVDPLKSE 744
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BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592805256|gb|GAXK01149312.1| (TSA: Calanus finmarchicus comp96464_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 4.978e+0
Identity = 19/84 (22.62%), Postives = 39/84 (46.43%), Query Frame = 0 
Query:   53 ILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKL--MDSFCDLCRTLGISNINKISLE 134
            +  H+ +    SNL ++L  E  GKH +   V++  + +  +    ++ Y Y G  ++    +DSF    + L I  ++ +  E
Sbjct:  207 VRCHKIVLAAASNLFKQLFVESTGKHPV---VILPHVSYSELV--NIVEYIYKGEISVGQSNLDSFLAAAKHLEICGVDPLKSE 443
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BLAST of EMLSAG00000001037 vs. C. finmarchicus
Match: gi|592805257|gb|GAXK01149311.1| (TSA: Calanus finmarchicus comp96464_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 4.987e+0
Identity = 19/84 (22.62%), Postives = 39/84 (46.43%), Query Frame = 0 
Query:   53 ILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKL--MDSFCDLCRTLGISNINKISLE 134
            +  H+ +    SNL ++L  E  GKH +   V++  + +  +    ++ Y Y G  ++    +DSF    + L I  ++ +  E
Sbjct:  207 VRCHKIVLAAASNLFKQLFVESTGKHPV---VILPHVSYSELV--NIVEYIYKGEISVGQSNLDSFLAAAKHLEICGVDPLKSE 443
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BLAST of EMLSAG00000001037 vs. L. salmonis peptides
Match: EMLSAP00000001037 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1171:93755:95025:1 gene:EMLSAG00000001037 transcript:EMLSAT00000001037 description:"augustus_masked-LSalAtl2s1171-processed-gene-1.8")

HSP 1 Score: 487.649 bits (1254), Expect = 2.821e-176
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0 
Query:    1 MKYVNLKCLGSHWKXIIFCFYNIGESLENLRNDTRNSDLHFLVYNSKGLESRILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKLMDSFCDLCRTLGISNINKISLEYIPVHDNTDLVDPWGNTKTPRHHSNTKIFTNYNLSEYDSIVLLNDKKIFCPPKVSLLKELVKRDSSLKEDPFLSTENPGSNCPTLFKPHSLLQSHTNNYAKDKSDK 240
            MKYVNLKCLGSHWKXIIFCFYNIGESLENLRNDTRNSDLHFLVYNSKGLESRILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKLMDSFCDLCRTLGISNINKISLEYIPVHDNTDLVDPWGNTKTPRHHSNTKIFTNYNLSEYDSIVLLNDKKIFCPPKVSLLKELVKRDSSLKEDPFLSTENPGSNCPTLFKPHSLLQSHTNNYAKDKSDK
Sbjct:    1 MKYVNLKCLGSHWKXIIFCFYNIGESLENLRNDTRNSDLHFLVYNSKGLESRILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKLMDSFCDLCRTLGISNINKISLEYIPVHDNTDLVDPWGNTKTPRHHSNTKIFTNYNLSEYDSIVLLNDKKIFCPPKVSLLKELVKRDSSLKEDPFLSTENPGSNCPTLFKPHSLLQSHTNNYAKDKSDK 240
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BLAST of EMLSAG00000001037 vs. L. salmonis peptides
Match: EMLSAP00000009767 (pep:novel supercontig:LSalAtl2s:LSalAtl2s632:219800:221127:-1 gene:EMLSAG00000009767 transcript:EMLSAT00000009767 description:"maker-LSalAtl2s632-augustus-gene-2.14")

HSP 1 Score: 95.9005 bits (237), Expect = 3.319e-23
Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = 0 
Query:   22 NIGESLENLRNDTRNSDLHFLVYN-SKGLESRILAHQFIFIPKSNLLRKLCYEVKGKHGISEPVVITLIGFKSIAVEALISYFYYGHTNLKLMDSFCDLCRTLGISNIN 129
            N G ++ +L N  + +DL F+  N  KG      AHQF+F PKS  LR LC E +GK  IS+PV+ITL G    +++A+I YFY G T+ +L D   D+C  LGI N++
Sbjct:   16 NFGNAVSDLLNHEKLTDLRFITVNEQKGTTKSFNAHQFLFTPKSAFLRTLCNEARGKQLISDPVIITLPGISPHSMQAVIDYFYTGITDFELRDDLEDMCLLLGIDNVD 124
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001037 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001037 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592790668|gb|GAXK01163900.1|7.129e-125.00TSA: Calanus finmarchicus comp383846_c3_seq2 trans... [more]
gi|592860754|gb|GAXK01096808.1|7.923e-123.76TSA: Calanus finmarchicus comp54344_c20_seq2 trans... [more]
gi|592787881|gb|GAXK01166687.1|8.977e-120.52TSA: Calanus finmarchicus comp1193_c26_seq61 trans... [more]
gi|592860762|gb|GAXK01096800.1|1.007e+023.76TSA: Calanus finmarchicus comp54344_c19_seq1 trans... [more]
gi|592894244|gb|GAXK01064131.1|1.588e+030.11TSA: Calanus finmarchicus comp182480_c0_seq1 trans... [more]
gi|592863388|gb|GAXK01094174.1|3.180e+052.17TSA: Calanus finmarchicus comp49961_c0_seq1 transc... [more]
gi|592805254|gb|GAXK01149314.1|4.379e+022.62TSA: Calanus finmarchicus comp96464_c3_seq2 transc... [more]
gi|592805255|gb|GAXK01149313.1|4.423e+022.62TSA: Calanus finmarchicus comp96464_c3_seq1 transc... [more]
gi|592805256|gb|GAXK01149312.1|4.978e+022.62TSA: Calanus finmarchicus comp96464_c0_seq2 transc... [more]
gi|592805257|gb|GAXK01149311.1|4.987e+022.62TSA: Calanus finmarchicus comp96464_c0_seq1 transc... [more]

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BLAST of EMLSAG00000001037 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000010372.821e-176100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1171:9375... [more]
EMLSAP000000097673.319e-2344.04pep:novel supercontig:LSalAtl2s:LSalAtl2s632:21980... [more]
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BLAST of EMLSAG00000001037 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001037 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001037 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001037 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1171supercontigLSalAtl2s1171:93755..95025 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s1171-processed-gene-1.8
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001037 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001037EMLSAT00000001037-696884Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1171:93755..95025+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001037-683803 ID=EMLSAG00000001037-683803|Name=EMLSAG00000001037|organism=Lepeophtheirus salmonis|type=gene|length=1271bp|location=Sequence derived from alignment at LSalAtl2s1171:93755..95025+ (Lepeophtheirus salmonis)
ATGAAATATGTTAACCTGAAATGTCTTGGAAGTCACTGGAAGGKAATCAT
TTTTTGCTTCTACGTAATTTGCATAATTGAATTGCAACAAATACTGTTTA
TTAAATTGTATTTCCATTGCAGAATATTGGAGAAAGTTTGGAGAATCTTC
GAAATGATACAAGAAACTCTGACCTGCATTTTTTAGTCTATAATTCTAAG
GGATTAGAGAGTCGCATCTTAGCTCATCAGTTTATATTTATTCCCAAATC
TAATTTACTTCGYAAATTATGCTATGAAGTTAAAGGAAAACACGGAGTAA
CATTTCCATAAAGTGCTCCTATGTTGAGTTTATTTAAAATATTATTTTTA
TTATTTTCAGATATCTGAGCCAGTTGTAATTACACTTATCGGATTTAAAT
CCATTGCAGTTGAAGCTTTAATTTCGTACTTTTACTATGGTCATACTAAT
TTAAAACTCATGGATAGTTTTTGTGATCTATGCCGTACTCTTGGTATCTC
GAATATAAACAAAATCTCATTAGAGTATATTCCTGTACATGACAATACGG
ATTTGGTCGATCCTTGGGGTAATACAAAAACACCACGACATCATTCAAAC
ACTAAGATATTTACAAATTATAATCTATCCGAATATGATAGTATCGTATT
ATTGAATGATAAGAAAATATTTTGCCCTCCAAAAGTTTCATTGTTGAAAG
AATTGGTGAAAAGGGATTCTAGTTTAAAAGAAGATCCTTTCTTAAGTACT
GAAAATCCTGGCTCTAATTGCCCAACATTGTTCAAGCCTCATAGTTTACT
ACAATCTCATACAAATAATTACGCGAAGGATAAAAGTGACAAGTAACAAT
ACGTTTTATTTTGATTTAAATTTTTAGGTACTTACAATTTATTCGTGTAA
GTATATAACTTTTTTTTTAAACAGTGATCCTAAGTGCCTAAGCAAGAAAA
TGAAGTTGAGTTTTACTCAGAATATTAAAGGAAAGTTGTTCTTAGAACCA
AGTATAATTAAAGACAAAAAAACGATAACTATTAGTACAAATTGTGCTCC
AAGGAATTCTCCAAAAGTCAATTCTTACAAAAAAGATACCTTTTTTAAAA
AATAGTTCGGAAATATCACAATTTACTTGATCAACTCATCAATTATGATA
CATCCTCATAATAACTGTGAAATATAACTTAATCNAATCAATAACCTCAG
AAATCGTATTTTCAATTATTATTTCTTTTCCATTACCTAATCAAGATGTA
TGAGTAACTTTGTCTTCTAAT
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