EMLSAG00000001188, EMLSAG00000001188-683954 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001188
Unique NameEMLSAG00000001188-683954
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001188 vs. L. salmonis peptides
Match: EMLSAP00000001188 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1197:88914:90666:-1 gene:EMLSAG00000001188 transcript:EMLSAT00000001188 description:"snap-LSalAtl2s1197-processed-gene-0.49")

HSP 1 Score: 464.922 bits (1195), Expect = 8.134e-168
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0 
Query:    1 MFFEVEVCHESDGSDDHACKYAHILNGWVKEIRSGVMSRSKSENCCIIEGHSGNRMICCCPGCKTGFPKSKKKKLEDSKRENTNSFRNQRRGLIQRRSLKADTIPTILHDFPGFQKVPEIPTNLASSTNRFERDNSRLNNRIRQSLKEDVITKMKNIKEKRDCSCFPEGIHEISNEEYTIYFALSKEDLSSTILYGWKVDNDFSYSIFANSFPLSNIESRMPVE 224
            MFFEVEVCHESDGSDDHACKYAHILNGWVKEIRSGVMSRSKSENCCIIEGHSGNRMICCCPGCKTGFPKSKKKKLEDSKRENTNSFRNQRRGLIQRRSLKADTIPTILHDFPGFQKVPEIPTNLASSTNRFERDNSRLNNRIRQSLKEDVITKMKNIKEKRDCSCFPEGIHEISNEEYTIYFALSKEDLSSTILYGWKVDNDFSYSIFANSFPLSNIESRMPVE
Sbjct:    1 MFFEVEVCHESDGSDDHACKYAHILNGWVKEIRSGVMSRSKSENCCIIEGHSGNRMICCCPGCKTGFPKSKKKKLEDSKRENTNSFRNQRRGLIQRRSLKADTIPTILHDFPGFQKVPEIPTNLASSTNRFERDNSRLNNRIRQSLKEDVITKMKNIKEKRDCSCFPEGIHEISNEEYTIYFALSKEDLSSTILYGWKVDNDFSYSIFANSFPLSNIESRMPVE 224
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BLAST of EMLSAG00000001188 vs. L. salmonis peptides
Match: EMLSAP00000002813 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1623:25369:26680:-1 gene:EMLSAG00000002813 transcript:EMLSAT00000002813 description:"snap-LSalAtl2s1623-processed-gene-0.12")

HSP 1 Score: 93.5893 bits (231), Expect = 9.634e-23
Identity = 52/122 (42.62%), Postives = 73/122 (59.84%), Query Frame = 0 
Query:   94 IQRRSLKADTIPTILHDFPG---FQKVPEIPTNLASSTNRFERDNSRLNNRIRQSLKEDVITKMKNIKEKRDCSCFPEGIHEISNEEYTIYFALSKEDLSSTILYGWKVDNDFSYSIFANSF 212
            ++R  LK D +PT+  D P     Q  PE  T L++ T RFE+D  RLN++I +  +ED I  + +IK+     C P+GI+ I NE++ I+FALS +DL   IL G KV+ND    IF N F
Sbjct:   17 LKRYKLKFDAVPTVFPDIPKNLRKQTFPESITTLSTYTKRFEQDKLRLNSQIERLSQEDEIKNLTDIKKTLGKPCLPKGINVIYNEDFVIFFALSSQDLVPYILLGLKVNND----IFLNFF 134
[Close]
BLAST of EMLSAG00000001188 vs. L. salmonis peptides
Match: EMLSAP00000012741 (pep:novel supercontig:LSalAtl2s:LSalAtl2s967:28852:32667:-1 gene:EMLSAG00000012741 transcript:EMLSAT00000012741 description:"snap-LSalAtl2s967-processed-gene-0.100")

HSP 1 Score: 73.559 bits (179), Expect = 6.150e-16
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 0 
Query:  137 RLNNRIRQSLKEDVITKMKNIKEKRDCSCFPEGIHEISNEEYTIYFALSKEDLSSTILYGWKVDNDFSYSIFANSFPLSNIE 218
            R ++++ Q  KED I  + +IK+K   S  P+GI+E SNE+Y I   LS +DL  TILYG KV++D +YSIF+   PL  IE
Sbjct:   78 RHDSQMEQLSKEDKIENLTDIKKKLSKSNLPKGINENSNEDYIILSELSTQDLVPTILYGLKVNSDLTYSIFSKGLPLPIIE 159
[Close]
BLAST of EMLSAG00000001188 vs. L. salmonis peptides
Match: EMLSAP00000004011 (pep:novel supercontig:LSalAtl2s:LSalAtl2s214:83119:84574:1 gene:EMLSAG00000004011 transcript:EMLSAT00000004011 description:"snap_masked-LSalAtl2s214-processed-gene-1.9")

HSP 1 Score: 49.2914 bits (116), Expect = 2.144e-7
Identity = 34/138 (24.64%), Postives = 64/138 (46.38%), Query Frame = 0 
Query:   84 NSFRNQRRGLIQRRSLKADTIPTILHDFPG--FQKVPEIPTNLASSTNRFERDNSRLNNRIRQSLKEDVITKMKNIKEKRDCSCFPEGIHEISNEEYTIYFALSKEDLSSTILYGWKVDNDFSYSIFANSF--PLSNI 217
            N F   +  + +R  LKAD IP++    P    +++P+  +N ASS+ R  +   +     ++ L  D +  ++ + EK D    P GI EIS     ++ +   E+    I +  KV  +    ++  +   PLS++
Sbjct:   71 NEFDKTKNKIAKRSILKADAIPSVFTGIPKSCLKRIPKPRSNNASSSARLNKQRKKSMEDYQKFLDSDRVDSIRELLEKFDRRNIPSGIDEISRNNEMMFLSFDWEN--QEIRFSLKVQENLKIQLYHQTMQIPLSDV 206
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001188 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001188 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001188 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000011888.134e-168100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1197:8891... [more]
EMLSAP000000028139.634e-2342.62pep:novel supercontig:LSalAtl2s:LSalAtl2s1623:2536... [more]
EMLSAP000000127416.150e-1647.56pep:novel supercontig:LSalAtl2s:LSalAtl2s967:28852... [more]
EMLSAP000000040112.144e-724.64pep:novel supercontig:LSalAtl2s:LSalAtl2s214:83119... [more]
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BLAST of EMLSAG00000001188 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001188 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001188 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001188 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1197supercontigLSalAtl2s1197:88914..90666 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s1197-processed-gene-0.49
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001188 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001188EMLSAT00000001188-697035Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1197:88914..90666-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001188-683954 ID=EMLSAG00000001188-683954|Name=EMLSAG00000001188|organism=Lepeophtheirus salmonis|type=gene|length=1753bp|location=Sequence derived from alignment at LSalAtl2s1197:88914..90666- (Lepeophtheirus salmonis)
ATGTTCTTTGAAGTAGAAGTATGTCATGAGAGCGACGGGAGCGACGACCA
TGCCTGTAAATACGCTCACATTCTTAATGGTTGGGTAAAAGAAATCCGCT
CTGGTGTAATGAGCCGAAGCAAATCGGAGAATTGCTGCATCATAGAAGGG
CATTCCGGGAGTACGGCTGGGATCAAAGGKCTTTTTCAAATAGACATTCT
TCATAGCACGACGAATGGCATCTCTTTTGGATTCCAAGTAGGCCTCATGG
GTCGAATGMCCGCCTCCAAACCGAGCTTTGTGTTCCGTAGACATCCTGGA
AACTGAAACGTTAGATGGAGCTTTAATACAGACACTTAAGTCTATGCCAA
TGTTACTAATAATTGGTCTCTGCTGTGTATGTCGGCTGKCGCCMTTATAT
ACAACGTCMCTGGRTGGGCTTGAAACAGCTGATATGTTTATTATGAGAAG
ATATCACTGCCTAGAGCAGGGGCGATAGAGAAAAAAATACATAGAGGCGA
CAAGGTGCGCAAAAGAGTGAGTAATATACTCCAGCTGACAAAAGGGGTAC
GTTCAAAGGAATGACGTCACATTTGTTTTTGAATAATATAATCAGAGAGA
AAAATTATAAATTTTTTTTTACTTATGTATATTGTTTTGGTGTGTGTGCA
CTTGTGAAAGGTGCAACCGATCGAATCAAACTCGAAGTGAGTCTAAAAGG
AAATGTAAGAAACATAATGAATGTATTCAAATATATTATATATTTATAAC
TCATATTTTCGTATTTCAGATAGAATGATTTGCTGTTGTCCCGGCTGCAA
AACTGGTTTTCCCAAGTCAAAGAAAAAGAAACTTGAGGACTCAAAGAGAG
AAAGTCATTCTCTCCATATATTTCGTAAAGATCATCAGCTTCTAAAGCAA
TGGATTATAGCAATTATGAGCCAAACCATAATTCAAGAATTTGTAGTATG
CATTTTTCTGAGAAAGATTTTATAAGTTAAAGAACAGATACAAATTCTTT
TCGAAACCAAAGACGTGGACTTATCCAAAGAAGAAGCCTCAAAGCAGATA
CTATTCCAACAATATTGCACGATTTCCCAGGGTTCCAGAAAGTTCCTGAA
ATACCGACTAATTTAGCTTCTTCAACTAATAGGTAATGTCTTTAAACAAT
TTTTCAATTTATTTTGTGTACATTAGAAAGAAAAATCGTAATATACTACT
TACTAGGATTCGTTGAAATTTCAGAAACTTCACAAATATGATTACCGTTT
ATATTTTTTTGTACAGATTTGAACGAGATAATAGTCGACTTAATAATCGA
ATTCGCCAATCTTTAAAAGAAGATGTTATCACAAAAATGAAGAATATTAA
GGAGAAGCGGGATTGCTCATGCTTTCCGGAAGGCATTCATGAAATATCGA
ATGAAGAATACACAATTTATTTTGCTCTATCTAAAGAAGATCTTTCTTCT
ACCATTTTATATGGTTGGAAAGTGGATAACGATTTTTCTTACTCGATTTT
CGCCAATAGTTTCCCTTTATCTAACATCGAAGTGAGCAATATTTGTCCCT
CAAATATCTTGAGTTATTTATCCGACGTTTGCAACATTTCGGCTTATCTA
AAGTTTAAATTGTGTGTTGGAGTCGGAATCAGGCAATTTATTTACAGACT
CCGAAGCCCTGTTTTATACCTAGTCCAGACATGAAACCTTATTCATACAT
TATAGGAATTTTATATAATATATTTCTAGTAGAGCAGAATGCCCGTTGAA
TGA
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