EMLSAG00000001230, EMLSAG00000001230-683996 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001230 vs. L. salmonis peptides
Match: EMLSAP00000001230 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11:54372:55068:1 gene:EMLSAG00000001230 transcript:EMLSAT00000001230 description:"augustus_masked-LSalAtl2s11-processed-gene-0.1") HSP 1 Score: 339.347 bits (869), Expect = 6.986e-120 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query: 1 MKILIVLGFLLDSSLGSGYRHHLNSYPSPFYPSHLTPQSEFYTSRHPFLHSNNHLMLHQFHQSNSHPVPQTFHHSNSHPFLYPVPIQTSTPKPIIVVTPVPVFVTPDSLFNSQRETFSSSSSNSGTNLNNGQFGNNLLNGKVHSTSFTPTPSRFDNNSSDQFPNDQILSPYYHN 174
MKILIVLGFLLDSSLGSGYRHHLNSYPSPFYPSHLTPQSEFYTSRHPFLHSNNHLMLHQFHQSNSHPVPQTFHHSNSHPFLYPVPIQTSTPKPIIVVTPVPVFVTPDSLFNSQRETFSSSSSNSGTNLNNGQFGNNLLNGKVHSTSFTPTPSRFDNNSSDQFPNDQILSPYYHN
Sbjct: 1 MKILIVLGFLLDSSLGSGYRHHLNSYPSPFYPSHLTPQSEFYTSRHPFLHSNNHLMLHQFHQSNSHPVPQTFHHSNSHPFLYPVPIQTSTPKPIIVVTPVPVFVTPDSLFNSQRETFSSSSSNSGTNLNNGQFGNNLLNGKVHSTSFTPTPSRFDNNSSDQFPNDQILSPYYHN 174
BLAST of EMLSAG00000001230 vs. L. salmonis peptides
Match: EMLSAP00000001218 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11:21782:22338:-1 gene:EMLSAG00000001218 transcript:EMLSAT00000001218 description:"maker-LSalAtl2s11-augustus-gene-0.14") HSP 1 Score: 159.844 bits (403), Expect = 1.436e-49 Identity = 91/153 (59.48%), Postives = 111/153 (72.55%), Query Frame = 0
Query: 19 YRHHLNSYPSPFYPSHLTPQSEFYTSRHPFLHSNNHLMLHQFHQSNSHPVPQTFHHSNSHPFLYPVPIQTSTPKPIIVVTPVPVFVTPDSLFNSQRETFSSSSSNSGTNLNNGQFGNNLLNGKVHSTSFTPTPSRFDNNSSDQFPNDQILSPY 171
Y+H L+SYP PFYPSH TPQSEFYTSRH SN++ + HQFHQSNSHPVP + IQTST PII+ TPVPVF+TP+SLFNSQR+ FS SS+ GTN+ + QFGN+ L GKV S S T TP+R DN SS++FPN+QI++ Y
Sbjct: 19 YQHPLHSYPGPFYPSHFTPQSEFYTSRHLLPQSNSYPVPHQFHQSNSHPVPYPVPYPVP--------IQTSTSVPIIIATPVPVFITPNSLFNSQRDIFSKGSSDIGTNIKSAQFGNSFLIGKVQSXSSTRTPTRLDNKSSNRFPNNQIVTSY 163
BLAST of EMLSAG00000001230 vs. L. salmonis peptides
Match: EMLSAP00000001219 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11:2555:3002:-1 gene:EMLSAG00000001219 transcript:EMLSAT00000001219 description:"maker-LSalAtl2s11-augustus-gene-0.13") HSP 1 Score: 146.362 bits (368), Expect = 1.135e-44 Identity = 96/159 (60.38%), Postives = 107/159 (67.30%), Query Frame = 0
Query: 1 MKILIVLGFLLDSSLGSGYRHHLNSYPSPFYPSHLTPQSEFYTSRHPFLHSNNHLMLHQFHQSNSHPVPQTFHHSNSHPFLYPVPIQTSTPKPIIVVTPVPVFVTPDSLFNSQRETFSSSSSNSGTNLNN-GQFGNNLLNGKVHSTSFTPTPSRFDNNS 158
MKIL++LG LL S+ S Y+H L YPSPFYPS QS+FY S+ PF SN SHP LYP P QTSTP+PIIV TP+PVFVTPDSLFNSQR+TF SS SN+G N NN GQFGNN LNGKV STSFT TPSRFDN+S
Sbjct: 1 MKILMILGLLLGSTFASEYQHPLLPYPSPFYPS----QSQFYASQQPFFRSN------------------------SHPVLYPFPTQTSTPRPIIVATPIPVFVTPDSLFNSQRDTF-SSGSNTGNNFNNEGQFGNNFLNGKVQSTSFTRTPSRFDNHS 130
BLAST of EMLSAG00000001230 vs. L. salmonis peptides
Match: EMLSAP00000000727 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1116:12706:13290:1 gene:EMLSAG00000000727 transcript:EMLSAT00000000727 description:"augustus_masked-LSalAtl2s1116-processed-gene-0.2") HSP 1 Score: 142.895 bits (359), Expect = 3.156e-43 Identity = 104/174 (59.77%), Postives = 123/174 (70.69%), Query Frame = 0
Query: 1 MKILIVLGFLLDSSLGSGYRHHLNSYPSPFYPSHLTPQSEFYTSRHPFLHSNNHLMLHQFHQSNSHPVPQTFHHSNSHPFLYPVPIQTSTPKPIIVVTPVPVFVTPDSLFNSQRETFSSSSSNSGTNLNNGQFGNNLLNGKVHSTSFTPTPSRFDNNSSDQFPNDQILSPYYHN 174
MKIL++LGFLL SS GS Y+H L+SYPSP +P HLTP S+F+ SR PFLH SNSHPVP YP PIQTSTP PI+VVTPVPVF++PDS+FNS R+ F SS SN+GTN N GQFGNN LNGKV STS T +PSRF+N S+Q PN++I+S Y N
Sbjct: 1 MKILMILGFLLGSSFGSQYQHPLHSYPSPVFPYHLTPPSQFFASRQPFLH------------SNSHPVP------------YPFPIQTSTPGPIVVVTPVPVFLSPDSIFNSHRDIF-SSDSNTGTNFNKGQFGNNFLNGKVQSTSSTSSPSRFNNPFSNQSPNNKIISSYSSN 149
BLAST of EMLSAG00000001230 vs. L. salmonis peptides
Match: EMLSAP00000000728 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1116:7767:8695:1 gene:EMLSAG00000000728 transcript:EMLSAT00000000728 description:"maker-LSalAtl2s1116-snap-gene-0.9") HSP 1 Score: 104.76 bits (260), Expect = 9.181e-29 Identity = 74/132 (56.06%), Postives = 88/132 (66.67%), Query Frame = 0
Query: 1 MKILIVLGFLLDSSLGSGYRHHLNSYPSPFYPSHLTPQSEFYTSRHPFLHSNNHLMLHQFHQSNSHPVPQTFHHSNSHPFLYPVPIQTSTPKPIIVVTPVPVFVTPDSLFNSQRETFSSSSSNSGTNLNNGQ 132
MKIL++LGF+L SS GS Y+H L+SYPSP +P HL S+FY SR Q FHH NSHP YP PIQTSTP PI+VVTPVPVF++PDS+FNSQR+TF SS+S +G N NNGQ
Sbjct: 1 MKILMILGFILGSSFGSQYQHPLHSYPSPVFPYHLGSPSQFYASR------------------------QQFHHFNSHPVPYPFPIQTSTPGPIVVVTPVPVFLSPDSIFNSQRDTF-SSNSKTGNNFNNGQ 107 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001230 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001230 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 0
BLAST of EMLSAG00000001230 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 5
BLAST of EMLSAG00000001230 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001230 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001230 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001230 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s11:54372..55068+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001230-683996 ID=EMLSAG00000001230-683996|Name=EMLSAG00000001230|organism=Lepeophtheirus salmonis|type=gene|length=697bp|location=Sequence derived from alignment at LSalAtl2s11:54372..55068+ (Lepeophtheirus salmonis)back to top Add to Basket
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