EMLSAG00000001697, EMLSAG00000001697-684463 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001697
Unique NameEMLSAG00000001697-684463
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001697 vs. L. salmonis peptides
Match: EMLSAP00000001697 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1293:85547:86422:-1 gene:EMLSAG00000001697 transcript:EMLSAT00000001697 description:"snap_masked-LSalAtl2s1293-processed-gene-0.12")

HSP 1 Score: 531.176 bits (1367), Expect = 0.000e+0
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0
Query:    1 MNNTRCCCQSLNFELKEASQSEEILGLQLQITSLSNTLSLYQKENVKFVDSLVRCAKEKADLELKLLRTEKTHEFRRVRALKKAEDIHKLILAQELKKAEETYKSLLVQELKKAQTTLELPRIRVLKEIEQIHNLRRVKELKKAEEAHKSVLVEELKKSENNYELRLIQELKKAEETHKSLQAQEIKKAWRTHKLIRVEELKKAEKAHESLRALQQKRTLETYESLQAEVIKRVEESYKSLRIQMETEKMNYSKKLEAKDMEIKKLLKGIYFST 274
            MNNTRCCCQSLNFELKEASQSEEILGLQLQITSLSNTLSLYQKENVKFVDSLVRCAKEKADLELKLLRTEKTHEFRRVRALKKAEDIHKLILAQELKKAEETYKSLLVQELKKAQTTLELPRIRVLKEIEQIHNLRRVKELKKAEEAHKSVLVEELKKSENNYELRLIQELKKAEETHKSLQAQEIKKAWRTHKLIRVEELKKAEKAHESLRALQQKRTLETYESLQAEVIKRVEESYKSLRIQMETEKMNYSKKLEAKDMEIKKLLKGIYFST
Sbjct:    1 MNNTRCCCQSLNFELKEASQSEEILGLQLQITSLSNTLSLYQKENVKFVDSLVRCAKEKADLELKLLRTEKTHEFRRVRALKKAEDIHKLILAQELKKAEETYKSLLVQELKKAQTTLELPRIRVLKEIEQIHNLRRVKELKKAEEAHKSVLVEELKKSENNYELRLIQELKKAEETHKSLQAQEIKKAWRTHKLIRVEELKKAEKAHESLRALQQKRTLETYESLQAEVIKRVEESYKSLRIQMETEKMNYSKKLEAKDMEIKKLLKGIYFST 274          
BLAST of EMLSAG00000001697 vs. L. salmonis peptides
Match: EMLSAP00000005035 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2628:842:2360:1 gene:EMLSAG00000005035 transcript:EMLSAT00000005035 description:"maker-LSalAtl2s2628-augustus-gene-0.2")

HSP 1 Score: 414.846 bits (1065), Expect = 9.501e-145
Identity = 227/299 (75.92%), Postives = 248/299 (82.94%), Query Frame = 0
Query:    1 MNNTRCCCQSLNFELKEASQSEEILGLQLQITSLSNTLSLYQKENVKFVDSLVRCAKEKADLELKLLRTEKTHEFRRVRALKKAEDIHKLILAQELKKAEETYKSLLVQELKKAQTTLELPRIRVLKEIEQIHNLRRVKELK------------------------------KAEEAHKSVLVEELKKSENNYELRLIQELKKAEETHKSLQAQEIKKAWRTHKLIRVEELKKAEKAHESLRALQQKRTLETYESLQAEVIKRVEESYKSLRIQMETEKMNYSKKLEAKDMEIKKLLKG 269
            MNN+RCCCQSLN E K+AS SEEIL  Q QITSLSNTLSLY++ENVKFVDSLVR  KEK DLE KLLRTEK HEFRRVRALKKAEDIHKL LAQELKKA+ETYKSLLVQELKKAQT LELPR+RVLKE+E+IH LRRV+ELK                              KAEEAHKS LV+ELKK+E+NYELRL+QELKKAEETHKSLQAQEIKKAWRTHK IRV ELKKAEKAHESLRAL+QKRTLETYESLQAE+IKR EE++KSLRIQMETEK NYSK+L+AKD+EIK+LL  
Sbjct:    1 MNNSRCCCQSLNCEWKKASPSEEIL--QAQITSLSNTLSLYKQENVKFVDSLVRYVKEKEDLERKLLRTEKIHEFRRVRALKKAEDIHKLHLAQELKKADETYKSLLVQELKKAQTALELPRVRVLKEMEEIHTLRRVQELKKAEEAHQSLLAQELKKAEEAHRSVLAQELEKAEEAHKSFLVQELKKAEDNYELRLVQELKKAEETHKSLQAQEIKKAWRTHKSIRVRELKKAEKAHESLRALEQKRTLETYESLQAELIKRAEETHKSLRIQMETEKRNYSKQLQAKDIEIKELLNA 297          
BLAST of EMLSAG00000001697 vs. L. salmonis peptides
Match: EMLSAP00000010468 (pep:novel supercontig:LSalAtl2s:LSalAtl2s6969:1137:2933:1 gene:EMLSAG00000010468 transcript:EMLSAT00000010468 description:"maker-LSalAtl2s6969-snap-gene-0.2")

HSP 1 Score: 202.216 bits (513), Expect = 3.267e-63
Identity = 133/268 (49.63%), Postives = 171/268 (63.81%), Query Frame = 0
Query:   27 LQLQITSLSNTLSLYQKENVKFVDSLVRCAKEKADLELKLLRTEKTHEFRRVRALKKAEDIHKLILAQELKKAEETYKSLLVQELKKAQTTLELPRI---------------------------------RVLKEIEQIHNLRRVKELKKAEEAHKSVLVEELKKSENNYELRLIQELKKAEETHKSLQAQEIKKA------WRTHKLIRVEE---------LKKAEKAHESLRALQQKRTLETYESLQAEVIKRVEESYKSLRIQME 246
            LQ +ITSLSN+LS  Q+EN+KFVD  V C KE  DL+ KLLRT + HEF RVRALKK  +I++L LAQELK+ EE++K LLVQELKKA+   EL ++                                 + LK++E  H LR V ELKKAEE HKS+ V+ELKK +  +ELRL +ELKKAE+ HKSL+ Q+++KA      +R HKL +VEE         L KAE   ESLRA + K+  ETY SL+AEV+KR E+++KSLRI +E
Sbjct:    2 LQAEITSLSNSLSFNQQENLKFVDPQVGCVKENEDLDRKLLRTGRIHEFXRVRALKKVHEINELRLAQELKRXEESHKYLLVQELKKAEDAYELRKVHELKKAEETHQSLLYQVLKKVDEVNELHLAQELKKLKKVEDAHALRIVYELKKAEETHKSLRVQELKKVKELHELRLFKELKKAEDPHKSLRVQDVQKAHDTQELYRIHKLQKVEEVPKSFLVQQLPKAENVCESLRAQELKKAGETYASLRAEVLKRAEKTHKSLRILVE 269          
BLAST of EMLSAG00000001697 vs. L. salmonis peptides
Match: EMLSAP00000007658 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4452:5698:6303:-1 gene:EMLSAG00000007658 transcript:EMLSAT00000007658 description:"snap_masked-LSalAtl2s4452-processed-gene-0.1")

HSP 1 Score: 165.622 bits (418), Expect = 3.806e-50
Identity = 106/186 (56.99%), Postives = 129/186 (69.35%), Query Frame = 0
Query:   27 LQLQITSLSNTLSLYQKENVKFVDSLVRCAKEKADLELKLLRTEKTHEFRRVRALKKAED----IHKLILAQELKKAEETYKSLLVQELKKAQTTLELPRIRVLKEIEQIHNLRRVKELKKAEEAHKSVLVEELKKSENNYELRLIQELKKAEETHKSLQAQEIKKAWRTHKLIRVEELKKAEKAH 208
            LQ +ITSLSN+ S  Q EN+KFVD  V C KEK DL+ KLLRT + HEFRRVR LKK E+    I++L LAQ+LKKAEE++KSLLVQELKKA+ T E               LR+V ELKKAEE HKS+L +ELKK E   EL L QE+KKA+ETHK L+ Q +K+    H+L   +ELKKA +AH
Sbjct:    2 LQAEITSLSNSFSFNQLENLKFVDPQVGCVKEKEDLDRKLLRTGRIHEFRRVRELKKVEESXPEINELRLAQDLKKAEESHKSLLVQELKKAEETYE---------------LRKVHELKKAEETHKSLLYQELKKVEEVNELHLAQEVKKAKETHKYLRIQXLKEVQELHELRLFKELKKAVEAH 172          

HSP 2 Score: 78.9518 bits (193), Expect = 5.186e-18
Identity = 54/114 (47.37%), Postives = 74/114 (64.91%), Query Frame = 0
Query:  131 QIHNLRRVKELKKAEEAHKSVLVEELKKSENNYELRLIQELKKAEETHKSLQAQEIKKAWRTHKLIRVEELKKAEKAHESLRALQQKRTLETYESLQAEVIKRVEESYKSLRIQ 244
            +IH  RRV+ELKK EE+   +            ELRL Q+LKKAEE+HKSL  QE+KKA  T++L +V ELKKAE+ H+SL   + K+  E  E   A+ +K+ +E++K LRIQ
Sbjct:   46 RIHEFRRVRELKKVEESXPEI-----------NELRLAQDLKKAEESHKSLLVQELKKAEETYELRKVHELKKAEETHKSLLYQELKKVEEVNELHLAQEVKKAKETHKYLRIQ 148          
BLAST of EMLSAG00000001697 vs. L. salmonis peptides
Match: EMLSAP00000006725 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3765:2827:7885:1 gene:EMLSAG00000006725 transcript:EMLSAT00000006725 description:"maker-LSalAtl2s3765-snap-gene-0.3")

HSP 1 Score: 147.517 bits (371), Expect = 1.610e-43
Identity = 91/163 (55.83%), Postives = 111/163 (68.10%), Query Frame = 0
Query:   27 LQLQITSLSNTLSLYQKENVKFVDSLVRCAKEKADLELKLLRTEKTHEFRRVRALKKAEDIHKLILAQELKKAEETYKSLLVQELKKAQTTLELPRIRVLKEIEQIHNLRRVKELKKAEEAHKSVLVEELKKSENNYELRLIQELKKAEETHKSLQAQEIKKA 189
            LQ QITSLSN+LS  Q+ENVKFVD  V C KEK DL+ K LRT   HEFRRVR LKK   I++L LAQELKKA+ET+KSLLVQ               VLK++E  + LR V ELKKAE+ HKS+ V+E++K+ +  EL  IQ+L+K EE HKS   Q + KA
Sbjct:    2 LQAQITSLSNSLSFIQQENVKFVDPQVGCVKEKEDLDRKFLRTGMIHEFRRVRELKK---INELRLAQELKKAKETHKSLLVQ---------------VLKKVEDAYELRIVYELKKAEDTHKSLRVQEVQKAHDTQELYRIQKLQKVEEVHKSFLVQHLSKA 146          

HSP 2 Score: 66.6254 bits (161), Expect = 8.521e-14
Identity = 48/113 (42.48%), Postives = 65/113 (57.52%), Query Frame = 0
Query:  132 IHNLRRVKELKKAEEAHKSVLVEELKKSENNYELRLIQELKKAEETHKSLQAQEIKKAWRTHKLIRVEELKKAEKAHESLRALQQKRTLETYESLQAEVIKRVEESYKSLRIQ 244
            IH  RRV+ELKK  E                  LRL QELKKA+ETHKSL  Q +KK    ++L  V ELKKAE  H+SLR  + ++  +T E  + + +++VEE +KS  +Q
Sbjct:   47 IHEFRRVRELKKINE------------------LRLAQELKKAKETHKSLLVQVLKKVEDAYELRIVYELKKAEDTHKSLRVQEVQKAHDTQELYRIQKLQKVEEVHKSFLVQ 141          
BLAST of EMLSAG00000001697 vs. L. salmonis peptides
Match: EMLSAP00000006001 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3250:4595:5221:1 gene:EMLSAG00000006001 transcript:EMLSAT00000006001 description:"maker-LSalAtl2s3250-augustus-gene-0.0")

HSP 1 Score: 89.7373 bits (221), Expect = 9.180e-23
Identity = 47/73 (64.38%), Postives = 53/73 (72.60%), Query Frame = 0
Query:    6 CCCQSLNFELKEASQSEEILGLQLQITSLSNTLSLYQKENVKFVDSLVRCAKEKADLELKLLRTEKTHEFRRV 78
            CCCQSLN  LK A QSEE+L  Q +ITS SN+LS  QKEN+KFVD  V C KEK DL+  LLRT +  EFRRV
Sbjct:    3 CCCQSLNCGLKVAVQSEEML--QAEITSFSNSLSFNQKENLKFVDPQVGCVKEKEDLDRTLLRTGRIQEFRRV 73          
BLAST of EMLSAG00000001697 vs. L. salmonis peptides
Match: EMLSAP00000005086 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2690:5411:8123:-1 gene:EMLSAG00000005086 transcript:EMLSAT00000005086 description:"snap-LSalAtl2s2690-processed-gene-0.3")

HSP 1 Score: 91.6633 bits (226), Expect = 1.585e-22
Identity = 51/79 (64.56%), Postives = 59/79 (74.68%), Query Frame = 0
Query:   10 SLNFELKEASQSEEILGLQLQITSLSNTLSLYQKENVKFVDSLVRCAKEKADLELKLLRTEKTHEFRRVRALKKAEDIH 88
            SLN  LK A QSEEIL  Q +ITSLSN+LS  Q+EN+KFVD  V C KEK DL+ KLLRT + HEFRRVR LKK  +I+
Sbjct:   95 SLNCGLKLAVQSEEIL--QAEITSLSNSLSFNQQENLKFVDPQVGCVKEKEDLDRKLLRTGRIHEFRRVRVLKKFHEIN 171          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001697 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001697 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001697 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 7
Match NameE-valueIdentityDescription
EMLSAP000000016970.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1293:8554... [more]
EMLSAP000000050359.501e-14575.92pep:novel supercontig:LSalAtl2s:LSalAtl2s2628:842:... [more]
EMLSAP000000104683.267e-6349.63pep:novel supercontig:LSalAtl2s:LSalAtl2s6969:1137... [more]
EMLSAP000000076583.806e-5056.99pep:novel supercontig:LSalAtl2s:LSalAtl2s4452:5698... [more]
EMLSAP000000067251.610e-4355.83pep:novel supercontig:LSalAtl2s:LSalAtl2s3765:2827... [more]
EMLSAP000000060019.180e-2364.38pep:novel supercontig:LSalAtl2s:LSalAtl2s3250:4595... [more]
EMLSAP000000050861.585e-2264.56pep:novel supercontig:LSalAtl2s:LSalAtl2s2690:5411... [more]
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BLAST of EMLSAG00000001697 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001697 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001697 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001697 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1293supercontigLSalAtl2s1293:85547..86422 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1293-processed-gene-0.12
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001697 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001697EMLSAT00000001697-697544Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1293:85547..86422-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001697-684463 ID=EMLSAG00000001697-684463|Name=EMLSAG00000001697|organism=Lepeophtheirus salmonis|type=gene|length=876bp|location=Sequence derived from alignment at LSalAtl2s1293:85547..86422- (Lepeophtheirus salmonis)
ATGAATAATACCCGGTGCTGTTGTCAGGTAATATGGTTTTTCTAACGGAT ATTCTTAGTTGTAATAATTCATTTTCAGTCTTTAAATTTTGAGTTGAAAG AAGCTTCTCAGTCTGAAGAAATACTGGGACTACAATTACAGATTACTTCA TTATCAAATACCTTGAGTTTGTACCAGAAGGAAAACGTAAAGTTTGTGGA TTCTCTGGTTAGATGTGCGAAGGAAAAGGCGGATCTTGAACTAAAGCTCC TAAGAACTGAGAAGACCCATGAATTCCGTCGTGTTCGAGCGCTCAAAAAA GCTGAAGATATCCATAAATTAATTTTAGCTCAAGAGCTAAAAAAAGCGGA AGAGACCTATAAATCCCTTCTAGTTCAAGAACTCAAAAAAGCTCAAACAA CATTGGAATTACCTCGTATCCGAGTACTCAAAGAAATTGAACAAATCCAT AATTTACGTCGAGTTAAAGAGCTCAAAAAAGCTGAAGAGGCCCATAAATC TGTTCTAGTTGAAGAGCTCAAGAAATCTGAAAATAACTATGAATTGCGTC TAATTCAAGAACTCAAAAAAGCCGAAGAGACCCATAAATCCCTTCAAGCT CAAGAGATCAAAAAAGCTTGGAGAACTCATAAATTAATTCGAGTTGAAGA GCTCAAAAAAGCTGAGAAGGCCCATGAATCTCTTCGAGCTCTACAGCAGA AAAGAACATTAGAGACCTATGAATCCCTTCAAGCTGAAGTGATCAAAAGA GTTGAGGAGAGCTATAAATCCCTTCGAATTCAAATGGAAACTGAAAAAAT GAATTATAGCAAAAAACTTGAAGCCAAAGACATGGAAATAAAAAAGCTAT TAAAAGGTATCTATTTTAGTACATGA
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